MELO3C016327.jh1.t1 (mRNA) Melon (Harukei-3) v1.41

Overview
NameMELO3C016327.jh1.t1
TypemRNA
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionProtein translocase subunit SecA
Locationchr07: 22770760 .. 22770942 (-)
Sequence length183
RNA-Seq ExpressionMELO3C016327.jh1.t1
SyntenyMELO3C016327.jh1.t1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACTGCTCGTGCTTTTCCGAAGCCCCCTTCGCTGCTGCCGTCACTGCAGCCCACCATTGGCTTTGTCAGTCCCGTTTCCTTCCAAACGTCGTCGTCGTTGCCTTATCGTCTCCGGAGACACCGTTCAATTGTCACTTCTCATCAGCGGTCACTGCCACTCCCGTTGCCGCGTCCTTGA

mRNA sequence

ATGGCCACTGCTCGTGCTTTTCCGAAGCCCCCTTCGCTGCTGCCGTCACTGCAGCCCACCATTGGCTTTGTCAGTCCCGTTTCCTTCCAAACGTCGTCGTCGTTGCCTTATCGTCTCCGGAGACACCGTTCAATTGTCACTTCTCATCAGCGGTCACTGCCACTCCCGTTGCCGCGTCCTTGA

Coding sequence (CDS)

ATGGCCACTGCTCGTGCTTTTCCGAAGCCCCCTTCGCTGCTGCCGTCACTGCAGCCCACCATTGGCTTTGTCAGTCCCGTTTCCTTCCAAACGTCGTCGTCGTTGCCTTATCGTCTCCGGAGACACCGTTCAATTGTCACTTCTCATCAGCGGTCACTGCCACTCCCGTTGCCGCGTCCTTGA

Protein sequence

MATARAFPKPPSLLPSLQPTIGFVSPVSFQTSSSLPYRLRRHRSIVTSHQRSLPLPLPRP
Homology
[Close]
BLAST of MELO3C016327.jh1.t1 vs. NCBI nr
Match: KAA0044858.1 (protein translocase subunit SECA2 [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (253), Expect = 3.60e-26
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MATARAFPKPPSLLPSLQPTIGFVSPVSFQTSSSLPYRLRRHRSIVTSHQR 51
          MATARAFPKPPSLLPSLQPTIGFVSPVSFQTSSSLPYRLRRHRSIVTSHQR
Sbjct: 1  MATARAFPKPPSLLPSLQPTIGFVSPVSFQTSSSLPYRLRRHRSIVTSHQR 51

[Close]
BLAST of MELO3C016327.jh1.t1 vs. NCBI nr
Match: XP_008451986.1 (PREDICTED: protein translocase subunit SECA2, chloroplastic isoform X1 [Cucumis melo] >TYK16606.1 protein translocase subunit SECA2 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 7.00e-19
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 0 

Query: 1  MATARAFPKPPSLLPSLQPTIGFVSPVSFQTSSSLPYRLRRHRSIVTSHQRSLPLPL 57
          MATARAFPKPPSLLPSL  T+GFVSPVSFQTSSSLPYRLRRHRSIVTS   +   P+
Sbjct: 1  MATARAFPKPPSLLPSLPLTVGFVSPVSFQTSSSLPYRLRRHRSIVTSSSAATATPV 57

[Close]
BLAST of MELO3C016327.jh1.t1 vs. NCBI nr
Match: KAA0044863.1 (protein translocase subunit SECA2 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 7.00e-19
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 0 

Query: 1  MATARAFPKPPSLLPSLQPTIGFVSPVSFQTSSSLPYRLRRHRSIVTSHQRSLPLPL 57
          MATARAFPKPPSLLPSLQ T+GFVSPVSFQTSS LPYRLRRHRSIVTS   +   P+
Sbjct: 1  MATARAFPKPPSLLPSLQLTVGFVSPVSFQTSSLLPYRLRRHRSIVTSSSAATATPV 57

[Close]
BLAST of MELO3C016327.jh1.t1 vs. NCBI nr
Match: XP_038882251.1 (protein translocase subunit SECA2, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 89.0 bits (219), Expect = 9.56e-19
Identity = 46/57 (80.70%), Postives = 48/57 (84.21%), Query Frame = 0 

Query: 1  MATARAFPKPPSLLPSLQPTIGFVSPVSFQTSSSLPYRLRRHRSIVTSHQRSLPLPL 57
          MATARA PKPPSLLPSLQPTIGFVSPVS QTSSSLPYR RRHRSIVTS   +   P+
Sbjct: 1  MATARALPKPPSLLPSLQPTIGFVSPVSSQTSSSLPYRFRRHRSIVTSSSAATATPV 57

[Close]
BLAST of MELO3C016327.jh1.t1 vs. NCBI nr
Match: XP_038882245.1 (protein translocase subunit SECA2, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 89.0 bits (219), Expect = 9.56e-19
Identity = 46/57 (80.70%), Postives = 48/57 (84.21%), Query Frame = 0 

Query: 1  MATARAFPKPPSLLPSLQPTIGFVSPVSFQTSSSLPYRLRRHRSIVTSHQRSLPLPL 57
          MATARA PKPPSLLPSLQPTIGFVSPVS QTSSSLPYR RRHRSIVTS   +   P+
Sbjct: 1  MATARALPKPPSLLPSLQPTIGFVSPVSSQTSSSLPYRFRRHRSIVTSSSAATATPV 57

[Close]
BLAST of MELO3C016327.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7TPN8 (Protein translocase subunit SECA2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G001500 PE=4 SV=1)

HSP 1 Score: 102 bits (253), Expect = 1.74e-26
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MATARAFPKPPSLLPSLQPTIGFVSPVSFQTSSSLPYRLRRHRSIVTSHQR 51
          MATARAFPKPPSLLPSLQPTIGFVSPVSFQTSSSLPYRLRRHRSIVTSHQR
Sbjct: 1  MATARAFPKPPSLLPSLQPTIGFVSPVSFQTSSSLPYRLRRHRSIVTSHQR 51

[Close]
BLAST of MELO3C016327.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5D3D1P1 (Protein translocase subunit SecA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004320 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.39e-19
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 0 

Query: 1  MATARAFPKPPSLLPSLQPTIGFVSPVSFQTSSSLPYRLRRHRSIVTSHQRSLPLPL 57
          MATARAFPKPPSLLPSL  T+GFVSPVSFQTSSSLPYRLRRHRSIVTS   +   P+
Sbjct: 1  MATARAFPKPPSLLPSLPLTVGFVSPVSFQTSSSLPYRLRRHRSIVTSSSAATATPV 57

[Close]
BLAST of MELO3C016327.jh1.t1 vs. ExPASy TrEMBL
Match: A0A1S3BTX8 (Protein translocase subunit SecA OS=Cucumis melo OX=3656 GN=LOC103493129 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.39e-19
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 0 

Query: 1  MATARAFPKPPSLLPSLQPTIGFVSPVSFQTSSSLPYRLRRHRSIVTSHQRSLPLPL 57
          MATARAFPKPPSLLPSL  T+GFVSPVSFQTSSSLPYRLRRHRSIVTS   +   P+
Sbjct: 1  MATARAFPKPPSLLPSLPLTVGFVSPVSFQTSSSLPYRLRRHRSIVTSSSAATATPV 57

[Close]
BLAST of MELO3C016327.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7TMY3 (Protein translocase subunit SecA OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G001550 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.39e-19
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 0 

Query: 1  MATARAFPKPPSLLPSLQPTIGFVSPVSFQTSSSLPYRLRRHRSIVTSHQRSLPLPL 57
          MATARAFPKPPSLLPSLQ T+GFVSPVSFQTSS LPYRLRRHRSIVTS   +   P+
Sbjct: 1  MATARAFPKPPSLLPSLQLTVGFVSPVSFQTSSLLPYRLRRHRSIVTSSSAATATPV 57

[Close]
BLAST of MELO3C016327.jh1.t1 vs. ExPASy TrEMBL
Match: A0A0A0KUY0 (Protein translocase subunit SecA OS=Cucumis sativus OX=3659 GN=Csa_4G050230 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.63e-19
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 0 

Query: 1  MATARAFPKPPSLLPSLQPTIGFVSPVSFQTSSSLPYRLRRHRSIVTS 48
          MAT RAFPKPPSLLPSLQPTIGFVSP+SFQTSSSL YRLRRHRSIV S
Sbjct: 1  MATTRAFPKPPSLLPSLQPTIGFVSPISFQTSSSLRYRLRRHRSIVNS 48

The following BLAST results are available for this feature:
BLAST of MELO3C016327.jh1.t1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0044858.13.60e-26100.00protein translocase subunit SECA2 [Cucumis melo var. makuwa][more]
XP_008451986.17.00e-1980.70PREDICTED: protein translocase subunit SECA2, chloroplastic isoform X1 [Cucumis ... [more]
KAA0044863.17.00e-1980.70protein translocase subunit SECA2 [Cucumis melo var. makuwa][more]
XP_038882251.19.56e-1980.70protein translocase subunit SECA2, chloroplastic isoform X2 [Benincasa hispida][more]
XP_038882245.19.56e-1980.70protein translocase subunit SECA2, chloroplastic isoform X1 [Benincasa hispida][more]
BLAST of MELO3C016327.jh1.t1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C016327.jh1.t1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TPN81.74e-26100.00Protein translocase subunit SECA2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3D1P13.39e-1980.70Protein translocase subunit SecA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A1S3BTX83.39e-1980.70Protein translocase subunit SecA OS=Cucumis melo OX=3656 GN=LOC103493129 PE=3 SV... [more]
A0A5A7TMY33.39e-1980.70Protein translocase subunit SecA OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
A0A0A0KUY08.63e-1991.67Protein translocase subunit SecA OS=Cucumis sativus OX=3659 GN=Csa_4G050230 PE=3... [more]
BLAST of MELO3C016327.jh1.t1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C016327.jh1MELO3C016327.jh1gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C016327.jh1.t1.exonMELO3C016327.jh1.t1.exonexon


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C016327.jh1.t1.stop_codonMELO3C016327.jh1.t1.stop_codonstop_codon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C016327.jh1.t1.cdsMELO3C016327.jh1.t1.cdsCDS


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C016327.jh1.t1.start_codonMELO3C016327.jh1.t1.start_codonstart_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C016327.jh1.t1MELO3C016327.jh1.t1-proteinpolypeptide