MELO3C012498.1 (mRNA) Melon (DHL92) v4

Overview


Name	MELO3C012498.1
Type	mRNA
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	protein RADIALIS-like 3
Location	chr01: 17386423 .. 17388591 (-)
Sequence length	490
RNA-Seq Expression	MELO3C012498.1
Synteny	MELO3C012498.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAATCCCTTTTTATCCAATGGCTTCGAGCTCTTTGAAGCAGCAACGACCGGAGACGACGTGGACACCAAAGCAAAACAAGCTGTTCGAGAAAGCATTGGCATTGTACGACAAAGATACGCCTGAGAGATGGCAAAATATTGCCACCGCGGTCGGTGGGAAGTCGGCCGATGAAGTTCAAAGACACTATGAGATACTCTTGGAAGATCTCCGGCAGATCGAGTCCGGTCGTGTTCCTATTCCCAATTACCGAGGCACTAGCAATCGAGATGAAGAGTTGAGGTTAGTGAAGATGATGAATAATAAGAAACATATTTGAACTCAAAAGATGATGTTCTTTTCTTCTTTTCTTTTTCGATTACTGGATGGTGATTCGAAATATATACGTCATTTAATAATTATTAAATACAATTAAGTAAGTTTTCTTTAAACTACGTGTTGAGGAAGTCTCTTTCAATGAAAATATATACTTTAATCAAGTTATTTCATTTTGATACTCTATAGTAATTTGGGCTTGCATGATATTAATTTTTAAACTATATATATATCTCAACCATAGTTTTTAATATTTTAAACTATTGTAGCTGAAGATAGGCATCATAATTTGGTTTTTGGGCACTAGTTCCTTGCTATCTTGTTGAATATTCTTTGGTTGGATTTGGAGATTTTTGTATTTTGGAACCAGTTTAGGTGAGTTTTATGTGCTTGGTTTTGTAGTTTTGTGATTAGGGTTTAGATTTTCTTTATATGGTTAGTGAATATTTGTGAGACTTTGACTAATAATTTGTTGGTTGAGTTTATTGAAATTTATTGGCTAGCTAGTTTGGTGGTCAGAATTAATCTTGTAAGTATATAATTATTAATTAGTTTTGAGTAAGTATAAATTATTTAAGTTTTAAGTTTTTAAATAGATAGAAATTACATGCCTGTGTTTGGAGTACAATTTCAAATGTTTAATTTTCAAATAAGTTATTTTTTAAGAAAATTCCAATTGGATAATAAATTTTACAAAAAAAATTAATAAAACAAGTTTTTTGAAAAAAAAAATTAAGTCAACCCAAATGAACTTGAAGTTTAGATAAAATTTATTCAAGAATAATTAACCCAATTACTTACATTTTCCTATAATTTTCAATCCAACAAAATTAAACATTTTAACTTGATCAACATATAAGTTAATAAACAAACAAGAGTTCAACAATTTTGTTGTTTTTTCTAAATATATTCACAAAACAAGAGAGATGAAGAGATAATCGATGCAATGGAACATCTTGGCGAGATTGACAGCCTCCTAATATCTTTAATAGTTCAACATAACTTGGGGATGGTTATCTTTAACCAACAAAAATTGAAATATATATATAACCCAAAAAATGCATAACCTTATGGGAAAATTCCAACCAAAAAGAAAAAGATAAACATTTAATTATCATACAAAAACGTTAGAGCACTAAATAAATTAAAGATCAAAATATAATCTACTTTCAATTCTAGAATTACAAAAGAAATAAAAGTTCATAATCGTGATAAATTTAATTACATTAACTCCATATAATGCTGAATTAACACAAAATTTATGACTTATTATAATAAAAGTATGTTTAGTTTAATAGTAATTAACACGATTCCTTCCTCTAAACTACTGAATTAAAATGAAAGACATGAAACTAAACTATATAAAGGTTTAAAAAACAGAAGAGCATCGGTTGGAACACATGCAACATCCAACTATGTTTCAATGATTTAACCGTCACTTGCTTTAAGCTTTTTTCCCCATTACTTTAGGTTGTAGGACTAATAATTTGAAGAAAACTACATTTAAATTTGATGAGTTAAATATCTCAAATAGGACAATGAAAGAAAAATCAACATTCAATTTTCTTGAATAAGTCGAAAGTTTTTATGTTGAGATGTGTTCTTCACTTTGCCATGATTGATATCTTTTTTTTTTTTTTTGTTAGGCTGTTAAAGTATCTGAAGCTTCAATGAAGAACTTGCCTACCACTACCACTATTCTCTTTCAATCTCTCATCAAACACAAGTGGCTCACTTGGCCTAGGTGTATTCATAGACATTCTAATGTACAAGTTTTATATCTTTTAAATGAACTTTCTCTCAATAAAAAGTGTACAACCAACAATCTATTTTAATATAATTTCATTTGCATTT

mRNA sequence

AAAAATCCCTTTTTATCCAATGGCTTCGAGCTCTTTGAAGCAGCAACGACCGGAGACGACGTGGACACCAAAGCAAAACAAGCTGTTCGAGAAAGCATTGGCATTGTACGACAAAGATACGCCTGAGAGATGGCAAAATATTGCCACCGCGGTCGGTGGGAAGTCGGCCGATGAAGTTCAAAGACACTATGAGATACTCTTGGAAGATCTCCGGCAGATCGAGTCCGGTCGTGTTCCTATTCCCAATTACCGAGGCACTAGCAATCGAGATGAAGAGTTGAGGCTGTTAAAGTATCTGAAGCTTCAATGAAGAACTTGCCTACCACTACCACTATTCTCTTTCAATCTCTCATCAAACACAAGTGGCTCACTTGGCCTAGGTGTATTCATAGACATTCTAATGTACAAGTTTTATATCTTTTAAATGAACTTTCTCTCAATAAAAAGTGTACAACCAACAATCTATTTTAATATAATTTCATTTGCATTT

Coding sequence (CDS)

ATGGCTTCGAGCTCTTTGAAGCAGCAACGACCGGAGACGACGTGGACACCAAAGCAAAACAAGCTGTTCGAGAAAGCATTGGCATTGTACGACAAAGATACGCCTGAGAGATGGCAAAATATTGCCACCGCGGTCGGTGGGAAGTCGGCCGATGAAGTTCAAAGACACTATGAGATACTCTTGGAAGATCTCCGGCAGATCGAGTCCGGTCGTGTTCCTATTCCCAATTACCGAGGCACTAGCAATCGAGATGAAGAGTTGAGGCTGTTAAAGTATCTGAAGCTTCAATGA

Protein sequence

MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ

Homology

[Close]

BLAST of MELO3C012498.1 vs. NCBI nr
Match: XP_008447023.1 (PREDICTED: protein RADIALIS-like 3 [Cucumis melo])

HSP 1 Score: 195.3 bits (495), Expect = 2.4e-46
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 97
          LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ
Sbjct: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 96

[Close]

BLAST of MELO3C012498.1 vs. NCBI nr
Match: XP_004151090.1 (protein RADIALIS-like 3 [Cucumis sativus])

HSP 1 Score: 190.7 bits (483), Expect = 6.0e-45
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 97
          LEDLR+IESGRVPIPNYR TSNRDEELRLLKYLKLQ
Sbjct: 61 LEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ 96

[Close]

BLAST of MELO3C012498.1 vs. NCBI nr
Match: KAA0055424.1 (protein RADIALIS-like 3 [Cucumis melo var. makuwa] >TYK22307.1 protein RADIALIS-like 3 [Cucumis melo var. makuwa])

HSP 1 Score: 183.7 bits (465), Expect = 7.4e-43
Identity = 89/93 (95.70%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSA+EVQRHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEIL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYL 94
          LEDLRQIESGRVPIPNYRGTSNRDEELRL+K +
Sbjct: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLVKMM 93

[Close]

BLAST of MELO3C012498.1 vs. NCBI nr
Match: XP_038888995.1 (protein RADIALIS-like 3 isoform X1 [Benincasa hispida])

HSP 1 Score: 177.2 bits (448), Expect = 6.9e-41
Identity = 86/96 (89.58%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPETTWT KQNKLFEKALALYDK+TPERW NIA AVGGKS DEV+RHYE+L
Sbjct: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSTDEVKRHYEVL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 97
          LEDLR+IESGRVPIPNYRG  NRDEELRLLKYLKLQ
Sbjct: 61 LEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ 96

[Close]

BLAST of MELO3C012498.1 vs. NCBI nr
Match: KGN43156.2 (hypothetical protein Csa_020475 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 1.2e-40
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSNRDEELR 89
          LEDLR+IESGRVPIPNYR TSNRDEELR
Sbjct: 61 LEDLRRIESGRVPIPNYRRTSNRDEELR 88

[Close]

BLAST of MELO3C012498.1 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-24
Identity = 57/103 (55.34%), Postives = 78/103 (75.73%), Query Frame = 0


Query: 1   MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
           MASSS+      ++WT KQNK+FE+ALA+YDKDTP+RWQN+A AVG KSA+EV+RHY+IL
Sbjct: 1   MASSSMSS---SSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61  LEDLRQIESGRVPIPNYR----GTSNR---DEELRLLKYLKLQ 97
           +EDL  IE   VP+P Y+    G+ +R   D +LRL+K +++Q
Sbjct: 61  VEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of MELO3C012498.1 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.3e-23
Identity = 50/82 (60.98%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MAS+S+       +WT K+NKLFE+ALA YD+DTP+RW N+A AVGGKSA+EV+RHYE+L
Sbjct: 1  MASNSMSS---SASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSN 83
          + D+  IESGR P PNYR   N
Sbjct: 61 IRDVNDIESGRYPHPNYRSNGN 79

[Close]

BLAST of MELO3C012498.1 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.0e-23
Identity = 55/100 (55.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MAS+S     P   WT  QNK+FE+ALA+YDKDTP+RW N+A AVGGK+ +EV+RHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLRQIESGRVPIPNYR-----GTSNRDEELRLLKYLKL 96
          +EDL  IE+GRVP+PNY+       S  D + R +K LK+
Sbjct: 61 VEDLINIETGRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of MELO3C012498.1 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-22
Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 1   MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
           MASSS+  Q    +WT KQNK FE+ALA YD+DTP RWQN+A  VGGK+ +EV+RHYE+L
Sbjct: 1   MASSSMSSQ-SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61  LEDLRQIESGRVPIPNYR---GTSN--RDEELRLLKYLKLQ 97
           ++D+  IE+G VP PNYR   G +N    +E + ++ ++LQ
Sbjct: 61  VQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKRMRNMRLQ 100

[Close]

BLAST of MELO3C012498.1 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.7e-21
Identity = 45/83 (54.22%), Postives = 65/83 (78.31%), Query Frame = 0


Query: 15 WTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPI 74
          W+ K+NK FE+ALA+YDKDTP+RW N+A AV G++ +EV++HYEIL+ED++ IESG+VP 
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF 70

Query: 75 PNYRGT-SNRDEELRLLKYLKLQ 97
          PNYR T  N   + +  + LK++
Sbjct: 71 PNYRTTGGNMKTDEKRFRNLKIR 93

[Close]

BLAST of MELO3C012498.1 vs. ExPASy TrEMBL
Match: A0A1S3BHB0 (protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103489572 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.2e-46
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 97
          LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ
Sbjct: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 96

[Close]

BLAST of MELO3C012498.1 vs. ExPASy TrEMBL
Match: A0A0A0K2A2 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G000020 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 2.9e-45
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 97
          LEDLR+IESGRVPIPNYR TSNRDEELRLLKYLKLQ
Sbjct: 61 LEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ 96

[Close]

BLAST of MELO3C012498.1 vs. ExPASy TrEMBL
Match: A0A5D3DF44 (Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00100 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.6e-43
Identity = 89/93 (95.70%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSA+EVQRHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEIL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYL 94
          LEDLRQIESGRVPIPNYRGTSNRDEELRL+K +
Sbjct: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLVKMM 93

[Close]

BLAST of MELO3C012498.1 vs. ExPASy TrEMBL
Match: A0A6J1GKW1 (protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111455298 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.1e-39
Identity = 85/96 (88.54%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPE TWT KQNKLFEKALALYDK+TPERW NIA AVGGKSADEV+RHYEIL
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 97
          LEDL +IESGRVPIPNYRG  N DEELRLLKYLKLQ
Sbjct: 61 LEDLLRIESGRVPIPNYRGVHNGDEELRLLKYLKLQ 96

[Close]

BLAST of MELO3C012498.1 vs. ExPASy TrEMBL
Match: A0A6J1ICR6 (protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111474479 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.4e-39
Identity = 84/96 (87.50%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSSLKQQRPE TWT KQNKLFEKALALYDK+ PERW NIA AVGGKSADEV+RHYEIL
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKEMPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 97
          LEDL++IESGRVPIPNYRG  N DEELRLLKYLKLQ
Sbjct: 61 LEDLQRIESGRVPIPNYRGAHNGDEELRLLKYLKLQ 96

[Close]

BLAST of MELO3C012498.1 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 113.6 bits (283), Expect = 8.7e-26
Identity = 57/103 (55.34%), Postives = 78/103 (75.73%), Query Frame = 0


Query: 1   MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
           MASSS+      ++WT KQNK+FE+ALA+YDKDTP+RWQN+A AVG KSA+EV+RHY+IL
Sbjct: 1   MASSSMSS---SSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61  LEDLRQIESGRVPIPNYR----GTSNR---DEELRLLKYLKLQ 97
           +EDL  IE   VP+P Y+    G+ +R   D +LRL+K +++Q
Sbjct: 61  VEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of MELO3C012498.1 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 109.0 bits (271), Expect = 2.1e-24
Identity = 55/100 (55.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MAS+S     P   WT  QNK+FE+ALA+YDKDTP+RW N+A AVGGK+ +EV+RHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLRQIESGRVPIPNYR-----GTSNRDEELRLLKYLKL 96
          +EDL  IE+GRVP+PNY+       S  D + R +K LK+
Sbjct: 61 VEDLINIETGRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of MELO3C012498.1 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 107.1 bits (266), Expect = 8.2e-24
Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 1   MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
           MASSS+  Q    +WT KQNK FE+ALA YD+DTP RWQN+A  VGGK+ +EV+RHYE+L
Sbjct: 1   MASSSMSSQ-SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61  LEDLRQIESGRVPIPNYR---GTSN--RDEELRLLKYLKLQ 97
           ++D+  IE+G VP PNYR   G +N    +E + ++ ++LQ
Sbjct: 61  VQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKRMRNMRLQ 100

[Close]

BLAST of MELO3C012498.1 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 106.3 bits (264), Expect = 1.4e-23
Identity = 49/78 (62.82%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MAS+S     P   WT  QNK+FE+ALA+YDKDTP+RW N+A AVGGK+ +EV+RHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLRQIESGRVPIPNYR 79
          +EDL  IE+GRVP+PNY+
Sbjct: 61 VEDLINIETGRVPLPNYK 75

[Close]

BLAST of MELO3C012498.1 vs. TAIR 10
Match: AT2G18328.1 (RAD-like 4 )

HSP 1 Score: 100.9 bits (250), Expect = 5.8e-22
Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60
          MASSS+      ++WT +++K FE ALA +DKDTP+RWQ IA AVGGKS +EV+RHYE+L
Sbjct: 1  MASSSMS----TSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELL 60

Query: 61 LEDLRQIESGRVPIPNYRGTS 82
          L D+  IESGR P P YR T+
Sbjct: 61 LRDVNDIESGRYPQPRYRNTN 77

The following BLAST results are available for this feature:

BLAST of MELO3C012498.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447023.1	2.4e-46	100.00	PREDICTED: protein RADIALIS-like 3 [Cucumis melo]	[more]
XP_004151090.1	6.0e-45	97.92	protein RADIALIS-like 3 [Cucumis sativus]	[more]
KAA0055424.1	7.4e-43	95.70	protein RADIALIS-like 3 [Cucumis melo var. makuwa] >TYK22307.1 protein RADIALIS-...	[more]
XP_038888995.1	6.9e-41	89.58	protein RADIALIS-like 3 isoform X1 [Benincasa hispida]	[more]
KGN43156.2	1.2e-40	97.73	hypothetical protein Csa_020475 [Cucumis sativus]	[more]

BLAST of MELO3C012498.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW75	1.2e-24	55.34	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
Q6NNN0	2.3e-23	60.98	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q1A173	3.0e-23	55.00	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
F4JVB8	1.1e-22	52.48	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q58FS3	3.7e-21	54.22	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]

BLAST of MELO3C012498.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BHB0	1.2e-46	100.00	protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103489572 PE=4 SV=1	[more]
A0A0A0K2A2	2.9e-45	97.92	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G000020 PE=4 S...	[more]
A0A5D3DF44	3.6e-43	95.70	Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1GKW1	1.1e-39	88.54	protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111455298 PE=4 SV=1	[more]
A0A6J1ICR6	2.4e-39	87.50	protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111474479 PE=4 SV=1	[more]

BLAST of MELO3C012498.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19510.1	8.7e-26	55.34	RAD-like 5	[more]
AT1G75250.2	2.1e-24	55.00	RAD-like 6	[more]
AT4G39250.1	8.2e-24	52.48	RAD-like 1	[more]
AT1G75250.1	1.4e-23	62.82	RAD-like 6	[more]
AT2G18328.1	5.8e-22	59.26	RAD-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 11..63 e-value: 2.1E-7 score: 40.6
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 7..61 score: 6.365003
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 14..61 e-value: 4.26734E-6 score: 38.3254
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 14..57 e-value: 7.9E-6 score: 26.0
None	No IPR available	GENE3D	1.10.10.60		coord: 7..74 e-value: 1.2E-23 score: 84.7
None	No IPR available	PANTHER	PTHR43952:SF29	PROTEIN RADIALIS-LIKE 3	coord: 1..80
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..80
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 15..68

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C012498	MELO3C012498	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C012498.1:exon:18635	MELO3C012498.1:exon:18635	exon
MELO3C012498.1:exon:18634	MELO3C012498.1:exon:18634	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C012498.1:three_prime_utr	MELO3C012498.1:three_prime_utr	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C012498.1:cds	MELO3C012498.1:cds	CDS
MELO3C012498.1:cds	MELO3C012498.1:cds_2	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C012498.1:five_prime_utr	MELO3C012498.1:five_prime_utr	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C012498.1	MELO3C012498.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003700	DNA-binding transcription factor activity