MELO3C012407.jh1.t1 (mRNA) Melon (Harukei-3) v1.41

Overview


Name	MELO3C012407.jh1.t1
Type	mRNA
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	SKP1-like protein
Location	chr10: 674812 .. 675971 (+)
Sequence length	1160
RNA-Seq Expression	MELO3C012407.jh1.t1
Synteny	MELO3C012407.jh1.t1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTGGAATTAAATTCCGAAAAGGAATGTGAGTTGGGAATTGATCAAAGAAGTTCCCCTAAAACAAAAACCCTAATCCCTATAAATACGGCCATTCATCGAATCAATTAATTCATCCATTCATCTTCGAGAAATTCCCAAATTCATCTCTGTTTCTTCGATTCCATTCTTTGATTGATCATCAAATATGAGGACTGTTAACCTAAGATCATCTGAGAACGAGATTTTCAAGGTGAGTGAGGAGGTCGCGAAGCAATCAGTGGTGGTTCGTAACTTTCTTGAAGAGGACAATTCCAATGGCGATGAAATCACGATTCCGCTGCCGAATATCAGTGGAAAATTGCTGGGAATGGTGATCGAGTGGATTGCGATGCATGTCGAGGAAAAATTAGCAGAGGAAGATCTTCATGCTTGGAAAACCAAGTTCATGGAGGATCTGGATTTGGATTTGTTGTTTGAGCTTATAATGGCTGCCAATTACCTGGAAGTTACCGATTTATTTCATGCAACTTGCCAATGTGTCGCTGATAAGATCTCCGGAAAGAGTCCGGAGGAGATTCGGAAGATCTTTAACATCACGAATGATTTTACACCTGAAGAAGAGGCTGAGATTCGACGCCAGAATGCTTGGGTCTTCGAACCATCCGGTAGCGGTAGCACCAGCGGCAGTAAATAAATTTTTGATTTCGCTAACTTTTAGTTCATGTTTTTGAGGAAAAAACAAGATGGGTGTCAATAGAATATATTAGAAATATTAAAGATTCATGGTTTACTATTTGCTGTTTTCAAATTTTTGAGGCAATCCATGAGTTTTTGTTTTCAAATGTTAATGTTCTTGCTGGAAAAAATACTGATGTGTCGCAATATTATTAATTTCTATGTTGAAACCTTTCTTTATTTGAAGATATTCTACATCCATCTTTTCTAAACTTAATCATAATAATACATCAAAGTATTGATCTTTAAATGAATCTGTTCTTAGCTTTGATGGTTCTTGATGATTGGATAGAATATGATGATAGTAGAGATAGGTTTCTTTATAAATAAGCACGTGGAAAAACCATTGATCTTAAAGGGAACTATTTAGAACTTTTTGTTTGTGACATAGCAGACAACCACTTGGGAATGATGAGAATAAATTATTATGAGCTTTGCTTTTAG

mRNA sequence

CTTTGGAATTAAATTCCGAAAAGGAATGTGAGTTGGGAATTGATCAAAGAAGTTCCCCTAAAACAAAAACCCTAATCCCTATAAATACGGCCATTCATCGAATCAATTAATTCATCCATTCATCTTCGAGAAATTCCCAAATTCATCTCTGTTTCTTCGATTCCATTCTTTGATTGATCATCAAATATGAGGACTGTTAACCTAAGATCATCTGAGAACGAGATTTTCAAGGTGAGTGAGGAGGTCGCGAAGCAATCAGTGGTGGTTCGTAACTTTCTTGAAGAGGACAATTCCAATGGCGATGAAATCACGATTCCGCTGCCGAATATCAGTGGAAAATTGCTGGGAATGGTGATCGAGTGGATTGCGATGCATGTCGAGGAAAAATTAGCAGAGGAAGATCTTCATGCTTGGAAAACCAAGTTCATGGAGGATCTGGATTTGGATTTGTTGTTTGAGCTTATAATGGCTGCCAATTACCTGGAAGTTACCGATTTATTTCATGCAACTTGCCAATGTGTCGCTGATAAGATCTCCGGAAAGAGTCCGGAGGAGATTCGGAAGATCTTTAACATCACGAATGATTTTACACCTGAAGAAGAGGCTGAGATTCGACGCCAGAATGCTTGGGTCTTCGAACCATCCGGTAGCGGTAGCACCAGCGGCAGTAAATAAATTTTTGATTTCGCTAACTTTTAGTTCATGTTTTTGAGGAAAAAACAAGATGGGTGTCAATAGAATATATTAGAAATATTAAAGATTCATGGTTTACTATTTGCTGTTTTCAAATTTTTGAGGCAATCCATGAGTTTTTGTTTTCAAATGTTAATGTTCTTGCTGGAAAAAATACTGATGTGTCGCAATATTATTAATTTCTATGTTGAAACCTTTCTTTATTTGAAGATATTCTACATCCATCTTTTCTAAACTTAATCATAATAATACATCAAAGTATTGATCTTTAAATGAATCTGTTCTTAGCTTTGATGGTTCTTGATGATTGGATAGAATATGATGATAGTAGAGATAGGTTTCTTTATAAATAAGCACGTGGAAAAACCATTGATCTTAAAGGGAACTATTTAGAACTTTTTGTTTGTGACATAGCAGACAACCACTTGGGAATGATGAGAATAAATTATTATGAGCTTTGCTTTTAG

Coding sequence (CDS)

ATGAGGACTGTTAACCTAAGATCATCTGAGAACGAGATTTTCAAGGTGAGTGAGGAGGTCGCGAAGCAATCAGTGGTGGTTCGTAACTTTCTTGAAGAGGACAATTCCAATGGCGATGAAATCACGATTCCGCTGCCGAATATCAGTGGAAAATTGCTGGGAATGGTGATCGAGTGGATTGCGATGCATGTCGAGGAAAAATTAGCAGAGGAAGATCTTCATGCTTGGAAAACCAAGTTCATGGAGGATCTGGATTTGGATTTGTTGTTTGAGCTTATAATGGCTGCCAATTACCTGGAAGTTACCGATTTATTTCATGCAACTTGCCAATGTGTCGCTGATAAGATCTCCGGAAAGAGTCCGGAGGAGATTCGGAAGATCTTTAACATCACGAATGATTTTACACCTGAAGAAGAGGCTGAGATTCGACGCCAGAATGCTTGGGTCTTCGAACCATCCGGTAGCGGTAGCACCAGCGGCAGTAAATAA

Protein sequence

MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWIAMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSGSK

Homology

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BLAST of MELO3C012407.jh1.t1 vs. NCBI nr
Match: XP_008446842.1 (PREDICTED: SKP1-like protein 12 [Cucumis melo])

HSP 1 Score: 320 bits (820), Expect = 3.75e-110
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60
           MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60

Query: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
           AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS
Sbjct: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSGSK 162
           PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSGSK
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSGSK 162

[Close]

BLAST of MELO3C012407.jh1.t1 vs. NCBI nr
Match: KAA0034704.1 (SKP1-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 317 bits (812), Expect = 2.06e-107
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60
           MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60

Query: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
           AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS
Sbjct: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSG 160
           PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSG
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSG 160

[Close]

BLAST of MELO3C012407.jh1.t1 vs. NCBI nr
Match: TYK09255.1 (SKP1-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 317 bits (812), Expect = 2.21e-107
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60
           MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60

Query: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
           AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS
Sbjct: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSG 160
           PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSG
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSG 160

[Close]

BLAST of MELO3C012407.jh1.t1 vs. NCBI nr
Match: XP_004142439.1 (SKP1-like protein 14 [Cucumis sativus])

HSP 1 Score: 298 bits (763), Expect = 1.98e-101
Identity = 154/164 (93.90%), Postives = 157/164 (95.73%), Query Frame = 0


Query: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60
           MR VNLRSSENEIFKVSEEVAKQSVVVR FLEED+SN DEITIPLPNISG+LLGMVIEWI
Sbjct: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWI 60

Query: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
            MHVEEKLAEE LHAWKTKF+EDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS
Sbjct: 61  VMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGS--TSGSK 162
           PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGS  TSGSK
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSGSTSGSK 164

[Close]

BLAST of MELO3C012407.jh1.t1 vs. NCBI nr
Match: KAE8648853.1 (hypothetical protein Csa_008932 [Cucumis sativus])

HSP 1 Score: 290 bits (742), Expect = 8.95e-97
Identity = 149/159 (93.71%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 6   LRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWIAMHVE 65
           +RSSENEIFKVSEEVAKQSVVVR FLEED+SN DEITIPLPNISG+LLGMVIEWI MHVE
Sbjct: 104 MRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWIVMHVE 163

Query: 66  EKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKSPEEIR 125
           EKLAEE LHAWKTKF+EDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKSPEEIR
Sbjct: 164 EKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKSPEEIR 223

Query: 126 KIFNITNDFTPEEEAEIRRQNAWVFEPSGSGS--TSGSK 162
           KIFNITNDFTPEEEAEIRRQNAWVFEPSGSGS  TSGSK
Sbjct: 224 KIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSGSTSGSK 262

[Close]

BLAST of MELO3C012407.jh1.t1 vs. ExPASy Swiss-Prot
Match: Q9WTX5 (S-phase kinase-associated protein 1 OS=Mus musculus OX=10090 GN=Skp1 PE=1 SV=3)

HSP 1 Score: 138.3 bits (347), Expect = 7.8e-32
Identity = 71/163 (43.56%), Postives = 105/163 (64.42%), Query Frame = 0


Query: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEE--DNSNGDEITIPLPNISGKLLGMVIE 60
           M T+ L+SS+ EIF+V  E+AKQSV ++  LE+   +  GD+  +PLPN++  +L  VI+
Sbjct: 1   MPTIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60

Query: 61  WIAMHVEE----------KLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHAT 120
           W   H ++          +   +D+  W  +F++ +D   LFELI+AANYL++  L   T
Sbjct: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVT 120

Query: 121 CQCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           C+ VA+ I GK+PEEIRK FNI NDFT EEEA++R++N W  E
Sbjct: 121 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

[Close]

BLAST of MELO3C012407.jh1.t1 vs. ExPASy Swiss-Prot
Match: Q6PEC4 (S-phase kinase-associated protein 1 OS=Rattus norvegicus OX=10116 GN=Skp1 PE=1 SV=3)

HSP 1 Score: 138.3 bits (347), Expect = 7.8e-32
Identity = 71/163 (43.56%), Postives = 105/163 (64.42%), Query Frame = 0


Query: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEE--DNSNGDEITIPLPNISGKLLGMVIE 60
           M T+ L+SS+ EIF+V  E+AKQSV ++  LE+   +  GD+  +PLPN++  +L  VI+
Sbjct: 1   MPTIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60

Query: 61  WIAMHVEE----------KLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHAT 120
           W   H ++          +   +D+  W  +F++ +D   LFELI+AANYL++  L   T
Sbjct: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVT 120

Query: 121 CQCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           C+ VA+ I GK+PEEIRK FNI NDFT EEEA++R++N W  E
Sbjct: 121 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

[Close]

BLAST of MELO3C012407.jh1.t1 vs. ExPASy Swiss-Prot
Match: Q39255 (SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.0e-31
Identity = 76/162 (46.91%), Postives = 102/162 (62.96%), Query Frame = 0


Query: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLEED-NSNGDEITIPLPNISGKLLGMVIEWI 61
           + + L+SS+ E F+V E VA +S  + + +E+D   NG    +PLPN++ K+L  VIE+ 
Sbjct: 4   KKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNG----VPLPNVTSKILAKVIEYC 63

Query: 62  AMHVE-----------EKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATC 121
             HVE              +++DL AW   FM+ +D   LFELI+AANYL + +L   TC
Sbjct: 64  KRHVEAAASKAEAVEGAATSDDDLKAWDADFMK-IDQATLFELILAANYLNIKNLLDLTC 123

Query: 122 QCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           Q VAD I GK+PEEIR  FNI NDFTPEEE E+RR+N W FE
Sbjct: 124 QTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of MELO3C012407.jh1.t1 vs. ExPASy Swiss-Prot
Match: Q9SY65 (SKP1-like protein 18 OS=Arabidopsis thaliana OX=3702 GN=ASK18 PE=1 SV=2)

HSP 1 Score: 136.7 bits (343), Expect = 2.3e-31
Identity = 71/152 (46.71%), Postives = 103/152 (67.76%), Query Frame = 0


Query: 6   LRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWIAMHV- 65
           L SS+ E F++ E VA++ +++ + + EDN  G+   IPL N++G +L  +IE+  MHV 
Sbjct: 8   LTSSDGESFEIDEAVARKFLIIVHMM-EDNCAGE--AIPLENVTGDILSKIIEYAKMHVN 67

Query: 66  ------EEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISG 125
                 E++ A+++L +W  KFME LDL+ +F++I+AANYL    L     Q VAD I  
Sbjct: 68  EPSEEDEDEEAKKNLDSWDAKFMEKLDLETIFKIILAANYLNFEGLLGFASQTVADYIKD 127

Query: 126 KSPEEIRKIFNITNDFTPEEEAEIRRQNAWVF 151
           K+PEE+R+IFNI NDFTPEEE EIR++NAW F
Sbjct: 128 KTPEEVREIFNIENDFTPEEEEEIRKENAWTF 156

[Close]

BLAST of MELO3C012407.jh1.t1 vs. ExPASy Swiss-Prot
Match: Q3ZCF3 (S-phase kinase-associated protein 1 OS=Bos taurus OX=9913 GN=SKP1 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.3e-31
Identity = 70/163 (42.94%), Postives = 105/163 (64.42%), Query Frame = 0


Query: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEE--DNSNGDEITIPLPNISGKLLGMVIE 60
           M ++ L+SS+ EIF+V  E+AKQSV ++  LE+   +  GD+  +PLPN++  +L  VI+
Sbjct: 1   MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ 60

Query: 61  WIAMHVEE----------KLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHAT 120
           W   H ++          +   +D+  W  +F++ +D   LFELI+AANYL++  L   T
Sbjct: 61  WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVT 120

Query: 121 CQCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           C+ VA+ I GK+PEEIRK FNI NDFT EEEA++R++N W  E
Sbjct: 121 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

[Close]

BLAST of MELO3C012407.jh1.t1 vs. ExPASy TrEMBL
Match: A0A1S3BGP6 (SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103489446 PE=3 SV=1)

HSP 1 Score: 320 bits (820), Expect = 1.82e-110
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60
           MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60

Query: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
           AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS
Sbjct: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSGSK 162
           PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSGSK
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSGSK 162

[Close]

BLAST of MELO3C012407.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5A7SU15 (SKP1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G007240 PE=3 SV=1)

HSP 1 Score: 317 bits (812), Expect = 9.97e-108
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60
           MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60

Query: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
           AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS
Sbjct: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSG 160
           PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSG
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSG 160

[Close]

BLAST of MELO3C012407.jh1.t1 vs. ExPASy TrEMBL
Match: A0A5D3CCN6 (SKP1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002490 PE=3 SV=1)

HSP 1 Score: 317 bits (812), Expect = 1.07e-107
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60
           MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60

Query: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
           AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS
Sbjct: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSG 160
           PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSG
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSTSG 160

[Close]

BLAST of MELO3C012407.jh1.t1 vs. ExPASy TrEMBL
Match: A0A0A0KRJ8 (SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_5G622630 PE=3 SV=1)

HSP 1 Score: 298 bits (763), Expect = 9.57e-102
Identity = 154/164 (93.90%), Postives = 157/164 (95.73%), Query Frame = 0


Query: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60
           MR VNLRSSENEIFKVSEEVAKQSVVVR FLEED+SN DEITIPLPNISG+LLGMVIEWI
Sbjct: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWI 60

Query: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
            MHVEEKLAEE LHAWKTKF+EDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS
Sbjct: 61  VMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGS--TSGSK 162
           PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGS  TSGSK
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPSGSGSGSTSGSK 164

[Close]

BLAST of MELO3C012407.jh1.t1 vs. ExPASy TrEMBL
Match: A0A6J1JGP3 (SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111486777 PE=3 SV=1)

HSP 1 Score: 207 bits (527), Expect = 6.38e-66
Identity = 97/153 (63.40%), Postives = 124/153 (81.05%), Query Frame = 0


Query: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60
           MRT  L+SS+N+IFKVSEE+A QS V++NFLE+  S+ DEI IPLPN+ G++L M+IEW+
Sbjct: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKNFLEDFGSDSDEIVIPLPNVRGRILEMMIEWM 60

Query: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
             HV+E+L +E++  W+ KFM DL++++  EL+MAANYLEV  L H TCQ +AD ISGKS
Sbjct: 61  VKHVDEELTKEEVEDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIADHISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWVFEPS 153
           PEEIR+I NIT+DFTPEEEAEIRRQN WV  PS
Sbjct: 121 PEEIRRILNITSDFTPEEEAEIRRQNGWVLNPS 153

[Close]

BLAST of MELO3C012407.jh1.t1 vs. TAIR 10
Match: AT1G75950.1 (S phase kinase-associated protein 1 )

HSP 1 Score: 137.9 bits (346), Expect = 7.3e-33
Identity = 76/162 (46.91%), Postives = 102/162 (62.96%), Query Frame = 0


Query: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLEED-NSNGDEITIPLPNISGKLLGMVIEWI 61
           + + L+SS+ E F+V E VA +S  + + +E+D   NG    +PLPN++ K+L  VIE+ 
Sbjct: 4   KKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNG----VPLPNVTSKILAKVIEYC 63

Query: 62  AMHVE-----------EKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATC 121
             HVE              +++DL AW   FM+ +D   LFELI+AANYL + +L   TC
Sbjct: 64  KRHVEAAASKAEAVEGAATSDDDLKAWDADFMK-IDQATLFELILAANYLNIKNLLDLTC 123

Query: 122 QCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           Q VAD I GK+PEEIR  FNI NDFTPEEE E+RR+N W FE
Sbjct: 124 QTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of MELO3C012407.jh1.t1 vs. TAIR 10
Match: AT1G10230.1 (SKP1-like 18 )

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-32
Identity = 71/152 (46.71%), Postives = 103/152 (67.76%), Query Frame = 0


Query: 6   LRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWIAMHV- 65
           L SS+ E F++ E VA++ +++ + + EDN  G+   IPL N++G +L  +IE+  MHV 
Sbjct: 33  LTSSDGESFEIDEAVARKFLIIVHMM-EDNCAGE--AIPLENVTGDILSKIIEYAKMHVN 92

Query: 66  ------EEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISG 125
                 E++ A+++L +W  KFME LDL+ +F++I+AANYL    L     Q VAD I  
Sbjct: 93  EPSEEDEDEEAKKNLDSWDAKFMEKLDLETIFKIILAANYLNFEGLLGFASQTVADYIKD 152

Query: 126 KSPEEIRKIFNITNDFTPEEEAEIRRQNAWVF 151
           K+PEE+R+IFNI NDFTPEEE EIR++NAW F
Sbjct: 153 KTPEEVREIFNIENDFTPEEEEEIRKENAWTF 181

[Close]

BLAST of MELO3C012407.jh1.t1 vs. TAIR 10
Match: AT4G34470.1 (SKP1-like 12 )

HSP 1 Score: 135.2 bits (339), Expect = 4.7e-32
Identity = 76/154 (49.35%), Postives = 102/154 (66.23%), Query Frame = 0


Query: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLEED-NSNGDEITIPLPNISGKLLGMVIEWI 61
           + + L SS+ + F+V E VA QS  + + +E+D  ++G    IPL N+  K+L  VIE+ 
Sbjct: 4   KMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADG----IPLANVESKILVKVIEYC 63

Query: 62  -AMHVEE--KLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKIS 121
              HV+E   ++EEDL+ W  KFM DL+   +FELI+AANYL +  LF  TCQ VAD I 
Sbjct: 64  KKYHVDEANPISEEDLNKWDEKFM-DLEQSTIFELILAANYLNIKSLFDLTCQTVADMIK 123

Query: 122 GKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           GK+PEEIR  FNI NDFTPEEE  +R++N W FE
Sbjct: 124 GKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of MELO3C012407.jh1.t1 vs. TAIR 10
Match: AT4G34210.1 (SKP1-like 11 )

HSP 1 Score: 132.5 bits (332), Expect = 3.1e-31
Identity = 75/154 (48.70%), Postives = 101/154 (65.58%), Query Frame = 0


Query: 2   RTVNLRSSENEIFKVSEEVAKQSVVVRNFLEED-NSNGDEITIPLPNISGKLLGMVIEWI 61
           + + L SS+ + F+V E VA QS  + + +E+D  ++G    IPL N+  K+L  VIE+ 
Sbjct: 4   KMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADG----IPLANVESKILVKVIEYC 63

Query: 62  AM-HVEE--KLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKIS 121
              HV+E   ++EEDL+ W  KFM DL+   +FELI+AANYL +  L   TCQ VAD I 
Sbjct: 64  KKHHVDEANPISEEDLNNWDEKFM-DLEQSTIFELILAANYLNIKSLLDLTCQTVADMIK 123

Query: 122 GKSPEEIRKIFNITNDFTPEEEAEIRRQNAWVFE 152
           GK+PEEIR  FNI NDFTPEEE  +R++N W FE
Sbjct: 124 GKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of MELO3C012407.jh1.t1 vs. TAIR 10
Match: AT2G03170.1 (SKP1-like 14 )

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-30
Identity = 65/146 (44.52%), Postives = 99/146 (67.81%), Query Frame = 0


Query: 6   LRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWIAMHVE 65
           L SS+ E F+V E VA++  +V + +E+D    +   +PL N++GK+L +V+E+   HV 
Sbjct: 8   LSSSDGESFEVEEAVARKLKIVEHMIEDDCVVTE---VPLQNVTGKILSIVVEYCKKHVV 67

Query: 66  EKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKSPEEIR 125
           ++ ++E    W  +FM+  D   +F+L++AANYL +  L   + Q VAD+I  K+PEEIR
Sbjct: 68  DEESDE-FKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIR 127

Query: 126 KIFNITNDFTPEEEAEIRRQNAWVFE 152
           +IFNI NDFTPEEEA +R++NAW FE
Sbjct: 128 EIFNIENDFTPEEEAAVRKENAWAFE 149

The following BLAST results are available for this feature:

BLAST of MELO3C012407.jh1.t1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446842.1	3.75e-110	100.00	PREDICTED: SKP1-like protein 12 [Cucumis melo]	[more]
KAA0034704.1	2.06e-107	100.00	SKP1-like protein 12 [Cucumis melo var. makuwa]	[more]
TYK09255.1	2.21e-107	100.00	SKP1-like protein 12 [Cucumis melo var. makuwa]	[more]
XP_004142439.1	1.98e-101	93.90	SKP1-like protein 14 [Cucumis sativus]	[more]
KAE8648853.1	8.95e-97	93.71	hypothetical protein Csa_008932 [Cucumis sativus]	[more]

BLAST of MELO3C012407.jh1.t1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9WTX5	7.8e-32	43.56	S-phase kinase-associated protein 1 OS=Mus musculus OX=10090 GN=Skp1 PE=1 SV=3	[more]
Q6PEC4	7.8e-32	43.56	S-phase kinase-associated protein 1 OS=Rattus norvegicus OX=10116 GN=Skp1 PE=1 S...	[more]
Q39255	1.0e-31	46.91	SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1	[more]
Q9SY65	2.3e-31	46.71	SKP1-like protein 18 OS=Arabidopsis thaliana OX=3702 GN=ASK18 PE=1 SV=2	[more]
Q3ZCF3	2.3e-31	42.94	S-phase kinase-associated protein 1 OS=Bos taurus OX=9913 GN=SKP1 PE=2 SV=1	[more]

BLAST of MELO3C012407.jh1.t1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BGP6	1.82e-110	100.00	SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103489446 PE=3 SV=1	[more]
A0A5A7SU15	9.97e-108	100.00	SKP1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G...	[more]
A0A5D3CCN6	1.07e-107	100.00	SKP1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475...	[more]
A0A0A0KRJ8	9.57e-102	93.90	SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_5G622630 PE=3 SV=1	[more]
A0A6J1JGP3	6.38e-66	63.40	SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111486777 PE=3 SV=1	[more]

BLAST of MELO3C012407.jh1.t1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75950.1	7.3e-33	46.91	S phase kinase-associated protein 1	[more]
AT1G10230.1	1.6e-32	46.71	SKP1-like 18	[more]
AT4G34470.1	4.7e-32	49.35	SKP1-like 12	[more]
AT4G34210.1	3.1e-31	48.70	SKP1-like 11	[more]
AT2G03170.1	1.2e-30	44.52	SKP1-like 14	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 1..101 e-value: 1.3E-27 score: 107.8
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 1..152 e-value: 9.0E-56 score: 190.4
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 2..67
IPR016072	SKP1 component, dimerisation	PFAM	PF01466	Skp1	coord: 103..149 e-value: 2.3E-24 score: 85.2
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 4..64 e-value: 2.8E-14 score: 53.0
IPR016897	S-phase kinase-associated protein 1	PIRSF	PIRSF028729	SCF_Skp	coord: 1..152 e-value: 1.0E-52 score: 176.2
IPR016897	S-phase kinase-associated protein 1	PANTHER	PTHR11165	SKP1	coord: 2..151
None	No IPR available	PANTHER	PTHR11165:SF114	SKP1-LIKE PROTEIN 13	coord: 2..151
IPR036296	SKP1-like, dimerisation domain superfamily	SUPERFAMILY	81382	Skp1 dimerisation domain-like	coord: 73..149

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C012407.jh1	MELO3C012407.jh1	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C012407.jh1.t1.exon	MELO3C012407.jh1.t1.exon	exon

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C012407.jh1.t1.start_codon	MELO3C012407.jh1.t1.start_codon	start_codon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C012407.jh1.t1.cds	MELO3C012407.jh1.t1.cds	CDS

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C012407.jh1.t1.stop_codon	MELO3C012407.jh1.t1.stop_codon	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C012407.jh1.t1	MELO3C012407.jh1.t1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process