MELO.jh100859.1.t1 (mRNA) Melon (Harukei-3) v1.41

Overview
NameMELO.jh100859.1.t1
TypemRNA
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionPolyadenylate-binding protein 2-like
Locationchr07: 18574387 .. 18580078 (+)
Sequence length546
RNA-Seq ExpressionMELO.jh100859.1.t1
SyntenyMELO.jh100859.1.t1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGACAAATCATTTGCATGCAATGTTAGTTGATATCTTGGTTCTGGGAATGATGGTAATGGTAACTTTTGCTTCATAAATGAGGGCTATTTAACTGTCCTTATGGGGGTACATAATTTTTCTTTTCTTGTGGCTTTGATATCGATATCTTGGTTCTATTATCTCCCTCACAGGTATTGCGTGCTGAAAATTTGTCACTGGCTGAAAATTTGTCACTGGCAACTATCTATCCTCAGTAGATCAGTTTCTGTTCCTTGAATAGCTTTAGCACAATTTATTTTTCCCCTTCCTTTTAATTTTATTTTGCGAGGCTTTACCTTCTTAGTGCCTTGTACTTTAAGAGTATCTGGCTTCTGTCTGTGCTTCAAATGAGTAGCCTATCTATGCGCAGAAGAGATATTGAGTATTCATTTATGGCACTTAGCAGCAGTCCTTCATGTGGTTTATAGGACGTATGGCAGTTACCAATGAGTAATTTCCTCGACTTTAGTGTCAATTAAATCACAACTTGAGATGGTGGAGAGTTTTCAGTAGTAGTTAGGATATTTTTATGATATATGGAGATGGGAGATGAGAATTGCTCATAAAGTTTATCATATCCGAAAGAGATATGCTTGGTGCAAATGAACTATGTATTTCTAGAAGTGGACACTGGACAGTGCTTGAGAGGAAGTGCTAATTACTAGACATACACTAAAATTAACTTTCATAAATCATAATAGCACTACACATTGACAAGTCACAGGCAGATGTTAAAATGTTGATTGCTTAAGTTTTTGTCTTAGTTGCCTTCTTTTCAAGTGGCCAAATAATAGAGTTGGGATTGGCATGAGTCATGATGCATACAGAAATATATTTTTTTAAAAAAATGTTTGACATGACCATCGATTACTGATGTTGGAGTAAATATCCTACACCGATTCCGTAACTTTTCTGTTGCTCTAGGAGCAGTTCACAAAGATTGGTTCATCTTCTTTTCTAGTTTTTAACTTTTAAGATAAAGGATCACATAGTCCATCAGGTTAAAGGAGAATCAATCAAAGTGTTTGAGCTGTTTATTAGTTTTGAGTGCAATAAAATATTCATACTTTTTAAGTTGGTCCTCTTTGGTATTATACTGCTATCGTTTCCATGCTTTACTTATGATTTAGTTTGTGTTTGATTAAATAACATTTAAGATGGAATTGGACTTGCAGGTTGATTATGCCTATACACCTGAAGAAGTGCAGCAGCATTTCCAATCTTGTGGTACTGTCAACAGGGTTACTATTCTCACAAATAAATTTGGTCATCCCAAGGGCTTTGCTTATGTGGAGTTTGTTGAAGCCGAAGCTGTTCAGGAGGCACTTCTTTTAAACGAGACAGAGTTGCATGGAAGACAATTGAAGGTAGCTCCTTGGGGAAAGATGATTTACGTTTCTATTCTATCAAGTATTGGACATTGGCATACTAATTCTACATTTTATTATTGGCGCCGTTATCTGTGCATGTTGTTTGAGTTCTTATAACTAATGTTAAATGGTTTTAATATCATTCTGTTCATCTCAGGTTCAACAAAAGCGAACAAAGTTAATGAATTGGTATATTGATATATCTAAGTACATGGAATGAATGTTGGAGAAGGGTGTAAATTATTCATATCTTACCTCATTCTCTTTTATAAATGACTCACCTTTTCTTCTCCTAAGGGATTTATGGACTGATTAATCAAAGAAAACTAAAGTGATGAAGGAGAAAGGGTTGTGCTGAAGCTAAGTATCACAAGATGGGAAGGTAAATAAAGTGTCTATTGCACCTTTATGTTCTTGATCTTGAACCTGTTGTATTGGGTCAGAATCTTCTTTCAATATCATATTGTCCAACTTCAGCATTGGTTCTTCACTGCACAGTACAAATGAGTCAAACATTTTAGATTTTATTTTTCAATTTTGTCATCAATTCATTACAGCCTGAAAATTTACCATTAGTCCAATATAATGTTAATCAATTTGGTTCTTTGAAAGCAAATAAAAGTCCATACTTTGCTTTACCACTTGAAGGTTCCGAATTAGGACTTAGGCTGTGTAAAGTAGTTTTGAGATATTTTACAGTATGAAAATCTATGTCTTTTTTTAATGTTTTTGCGATTGTAGAACAAAGTGAAAGCAAGAGTATAATAGTTCTAGTAGTTGTGCCAATCATATCAGTATTAATCTTCTTGGCTTCGAGCAGCTTTTTTATCATTAGAAATGTAAGAAGAAGAGCTAAAGGTATGTAAAGCTTTCCTCCTCATTCTCTTGAATCATAAGGTTTTTGTTTCCATTTTTATTCATCTTAAAATATCAGCAGATAATGAAGTTACTATAACTGAGCATCTAATAAATGAGAGTCTACTTGATGTGCCGATTATGATAATTGAGCAATAAGTTGAAAAGTAAAGCAATCATTTTTATTCACTTTCTTGATCCTGATAAGTCCAAGAGTAAGGATGATTTTATTCATAATTACAAGAATCTTAGAATTTGGGAAAAGGATTGTATATGATTGCATATATGGAACATTTCTAATAATAGATTGAAGAGATTTAGGAAAGCCTGATGGATGAGGTAGACTAAAGAGAGTTATGTGGATTTGGGTGTGGATATAAAATCTTAAAAACTTTTCATCATTCTCTGCAATTTTAGTACTTCAAACAGCTTTGTTATTCTAAATAAATGGTTTATTTGGATATTGTTTGTAGATAATTGAAGTCATATCGGGTTGAAAGCTAAGTGATTGTGTAGAGATTGCCAAGCGATCGTTGAAAATTGAAGACTCAGAAGGCATTTAGGATTTTTAATTATTTAATTCTTGTATTAGAATCTTTTTTCATGTACTATTGTAGAATGTTAAACATAATATTAAGATTTTATTTTGTGTATTCAAATGTAAAAGACAAATATTATAGTTTTTAACATAATATGAATTTCATTGATTTGTTGGGTGTGAAAAACATATTTATCTACATTGATCCAATGTCGGTATATAGGACAATAATGTAACAATTAAATAAAAATAAATTTGTACAAATGAATCCAAAAACTAGGCTTTAATGTCGGTTTTAAACCGACATCAAAGTTCAACCGACATTAAAGGGCTTCAATAACACTATCAAAGATGTCGGTTAAAAACTGACAAACCGACGTTAAAAAGGCCTTTAATGTCGTTTTTAAACCGACATTAAAGCCCAACCGACATTAAAGGGCTTCAATAACACCATCAAAGATGTCGGTTGAAAACTGACATTAAAGGCCTTCAATGTCGTTTTTAACCCGACATTAAAAAGGCCTTTAATGTCGTTTTTAAACCGACATTAAAGCCTAACCGACATTAAAGGCCTTTAATAACGCTCACAAAGATGTCGGTTGCTAAGTGACATTTAAAGGCCTTTAATGTCGGTTTTAAACCGACATTAAAGGCCAAAATTCTTCTAGTGACATTTGTTTTTTAAATATTTGTTAAGTAACAAATGATGATTAGAAAATAAATTAGGGTTCTATTTTCGTTAGGTATTTTTATTTCTTTTTTTAAAATTACTATTTTCGTTATATCCTGGCAATTAAGAGAGTGGGAACACAACCACTACTCTACCACCTGACATTGAATTAAATGATGCATTATATAGTATATATTGCAAAATAATACTTCAAATATAATATTATAATTCATAAACCGATATAATTTAAGGGTAGCACGTACTCCAAGAGGTCCTTATTTAGATCCATCGGTGCCTTCAATCCCAACTTTTCCAGTGATCGTCATCAACCAACCTCCAACTTCCATCTTTTTCTACTATTTCTTCACAATCGTTTTTTCAGTGACCACTTCTCGATAATCGTCGATGGCTAACTTCCAACCATCATTTTTCTTGCATTTACACATATCAACCACTTTTCGGCAACCATCACTAGTTAACTATCGACAACCATTTTTTTTTCTTGTTACCACTAGCTACAACCTTCTGATGACAGTTGCCACCTACCTCTCGTCATCGTTTTCCATGGACCATTGTTGGCCACTTTCAACCACCATCTCGAGCAATTGTTTTCAAAAAATCATTGAAAACCAACTTTTGCAATCGATGCGACCAACTTTCGACATCAATATTTTGATGACCGTTGTCGACCAACTTTCAACAAATAGCTACGACCAACCTACGATCATTGTTTTCCATTCATCTTCATCAACCACCTTTGACTACCTCCCTAATGACCATCAGTTCCACGAACTAATTCTTTCATTGTAATTAGAAGTTAATAAAAGTACTTTTACTATATAACAATTCAAACAAACTTTTATGTAGAAACATTTATGTGAAAAAAAATTTACCATATCTTTTTATTTTTTAATCCAAAGTGTTTAAATGAAGATGTGTTTTTGAAAAACACTTTTTCCTACTAAATCATTCCAAACCGGCCTAAAGGTCTTTTAGATTATGCATGTATAGCAAAAAATTTAATTGTAAATTTCATGTTCTTTCTATATCTCCCCATTTTATCTTTATAATTTTTTTCTTTTTGGTATTCATTTTTCCCTTATATGGATTTGAAGTTGTGGTGAGAAATGACAAATGATTATGAGGAAGATTTCAAAATTCGAAATGGAGAGCAGTAGAACACTTATCTTATCTCGTTTTGTTTTCTTTGCATTCCAAATTTTAAACTTTCTCCAAGACATTTCTTCATGATCTTTTCTTATCTTTCTTCACTATTTTTCTTCAATATTTTCTCCCTAGTTTTCTCCCCAACTAATTAAACTTTAGAAAAAGCGAGAGAAAAAGAACATCCTCTCTCTCACTTCTTTTTTTAATGTGGCTTTACTTCTTCGTTATTATTTTATTATTGTTTTTTTTTTAATTTTAAATAATATTACTTTAAATTTAAGTCTATCTCTTTAGCTTCTGTTTAACAGATATTAAATTAGAAGCGTCTAATAAATTTTAGGTTAAAACTATATATCATTTTAATTTCAGCAGCAAACGATATCATTGGTGACAAGATAAAAATTAATATAAAAAATTAGATTACAAATCAAATCATTAGCAATTAGTATAGAGAATAATCAATATCCAATAGCAATCGGTATAAAATAAGAATCCTAAAACAATCAAATCCTAATTAGTATCTGTTAGCTAAATAAGAATTAGTTAGCTAGTTTGTTATAAAACAGTTAAGAGCTATTAGTTGCAAAATGACACTCAAAGCTTTCTAGCTTTCTTTATAATAAGGCTTGATCTCTGTATTTATTCATTCAATTGAAATCACTTTCTTATTCAAACTTTGATATGGTATCGGAGCAATAAATTCCCAAAACTCTGCCGAAAAAGATTTCCGACGTCCTCCCTATTTGTTGTGCAATCATCGCCTATGCTTCTTCTTCAGCCAGCTTCCAATATGACAACACCAGAGAACTCGGCGCTTGGAAACAATCCAACTTTTGCTTCCATTTCTTCACCGGAATTTGATGCCCAACTTAACCCATATATCCTTTCACCATTCAATCATACCAACCTCAAATCTTGTTTCTACACCCCTTGCAGGATCAAGCAATTATTCCTCGTGGAGCAGAGCTATGATAGCACTTTGCAGAAAGAACAAGATAGATTTTGTCCCCAAAGCAATCAAGAAACCTACAAAAGGAAATTTACTTTCAACCTGGAAATGCAACAATGA

mRNA sequence

ATGGAGACAAATCATTTGCATGCAATGTTAGTTGATATCTTGGTTCTGGGAATGATGGTAATGGTTGATTATGCCTATACACCTGAAGAAGTGCAGCAGCATTTCCAATCTTGTGGTACTGTCAACAGGGTTACTATTCTCACAAATAAATTTGGTCATCCCAAGGGCTTTGCTTATGTGGAGTTTGTTGAAGCCGAAGCTGTTCAGGAGGCACTTCTTTTAAACGAGACAGAGTTGCATGGAAGACAATTGAAGCCAGCTTCCAATATGACAACACCAGAGAACTCGGCGCTTGGAAACAATCCAACTTTTGCTTCCATTTCTTCACCGGAATTTGATGCCCAACTTAACCCATATATCCTTTCACCATTCAATCATACCAACCTCAAATCTTGTTTCTACACCCCTTGCAGGATCAAGCAATTATTCCTCGTGGAGCAGAGCTATGATAGCACTTTGCAGAAAGAACAAGATAGATTTTGTCCCCAAAGCAATCAAGAAACCTACAAAAGGAAATTTACTTTCAACCTGGAAATGCAACAATGA

Coding sequence (CDS)

ATGGAGACAAATCATTTGCATGCAATGTTAGTTGATATCTTGGTTCTGGGAATGATGGTAATGGTTGATTATGCCTATACACCTGAAGAAGTGCAGCAGCATTTCCAATCTTGTGGTACTGTCAACAGGGTTACTATTCTCACAAATAAATTTGGTCATCCCAAGGGCTTTGCTTATGTGGAGTTTGTTGAAGCCGAAGCTGTTCAGGAGGCACTTCTTTTAAACGAGACAGAGTTGCATGGAAGACAATTGAAGCCAGCTTCCAATATGACAACACCAGAGAACTCGGCGCTTGGAAACAATCCAACTTTTGCTTCCATTTCTTCACCGGAATTTGATGCCCAACTTAACCCATATATCCTTTCACCATTCAATCATACCAACCTCAAATCTTGTTTCTACACCCCTTGCAGGATCAAGCAATTATTCCTCGTGGAGCAGAGCTATGATAGCACTTTGCAGAAAGAACAAGATAGATTTTGTCCCCAAAGCAATCAAGAAACCTACAAAAGGAAATTTACTTTCAACCTGGAAATGCAACAATGA

Protein sequence

METNHLHAMLVDILVLGMMVMVDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHGRQLKPASNMTTPENSALGNNPTFASISSPEFDAQLNPYILSPFNHTNLKSCFYTPCRIKQLFLVEQSYDSTLQKEQDRFCPQSNQETYKRKFTFNLEMQQ
Homology
[Close]
BLAST of MELO.jh100859.1.t1 vs. NCBI nr
Match: KAA0026054.1 (polyadenylate-binding protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 134 bits (336), Expect = 3.67e-37
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 22 VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 81
          VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHG
Sbjct: 7  VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 66

Query: 82 RQLK 85
          RQLK
Sbjct: 67 RQLK 70

[Close]
BLAST of MELO.jh100859.1.t1 vs. NCBI nr
Match: XP_011657966.1 (polyadenylate-binding protein 3 isoform X2 [Cucumis sativus])

HSP 1 Score: 130 bits (326), Expect = 3.43e-35
Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 0 

Query: 20 VMVDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETEL 79
          +MVDYA TPEEVQQHFQSCGTVNRVTILT+KFGHPKGFAYVEFVEAEA+QEALLLNETEL
Sbjct: 1  MMVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAIQEALLLNETEL 60

Query: 80 HGRQLK 85
          HGRQLK
Sbjct: 61 HGRQLK 66

[Close]
BLAST of MELO.jh100859.1.t1 vs. NCBI nr
Match: TYK22852.1 (polyadenylate-binding protein 3-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 128 bits (322), Expect = 4.86e-35
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0 

Query: 22 VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 81
          VDYA TPEEVQQHFQSCGTVNRVTILT+KFGHPKGFAYVEFVEAEAVQEALLLNETELHG
Sbjct: 7  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 66

Query: 82 RQLK 85
          RQLK
Sbjct: 67 RQLK 70

[Close]
BLAST of MELO.jh100859.1.t1 vs. NCBI nr
Match: XP_038882560.1 (polyadenylate-binding protein 3-like isoform X3 [Benincasa hispida])

HSP 1 Score: 129 bits (323), Expect = 9.76e-35
Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 0 

Query: 20 VMVDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETEL 79
          +MVDYA TPEEVQQHFQSCGTVNRVTILT+KFGHPKGFAYVEFVEAEAVQEALLLNE+EL
Sbjct: 1  MMVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNESEL 60

Query: 80 HGRQLK 85
          HGRQLK
Sbjct: 61 HGRQLK 66

[Close]
BLAST of MELO.jh100859.1.t1 vs. NCBI nr
Match: XP_008464885.1 (PREDICTED: polyadenylate-binding protein 1-like [Cucumis melo])

HSP 1 Score: 126 bits (317), Expect = 2.95e-34
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0 

Query: 22 VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 81
          VDYA TPEEV+QHFQSCGTVNRVTILT+KFGHPKGFAYVEFVEAEAVQEALLLNET+LHG
Sbjct: 7  VDYACTPEEVEQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETKLHG 66

Query: 82 RQLKPA 87
          RQLK A
Sbjct: 67 RQLKVA 72

[Close]
BLAST of MELO.jh100859.1.t1 vs. ExPASy Swiss-Prot
Match: Q93VI4 (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.2e-26
Identity = 56/70 (80.00%), Postives = 63/70 (90.00%), Query Frame = 0 

Query: 22  VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 81
           VDYA TPEEVQQHFQSCGTVNRVTILT+KFG PKGFAYVEFVE EAVQ +L+LNE+ELHG
Sbjct: 110 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHG 169

Query: 82  RQLKPASNMT 92
           RQ+K ++  T
Sbjct: 170 RQIKVSAKRT 179

[Close]
BLAST of MELO.jh100859.1.t1 vs. ExPASy Swiss-Prot
Match: Q9FJN9 (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.2e-26
Identity = 63/106 (59.43%), Postives = 72/106 (67.92%), Query Frame = 0 

Query: 22  VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 81
           VDYA TPEEVQQHFQ+CGTV+RVTILT+KFG PKGFAYVEFVE EAVQEAL LNE+ELHG
Sbjct: 99  VDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHG 158

Query: 82  RQLKPASNMTTPENSALGNNPTFASISSPEFDAQ-LNPYILSPFNH 127
           RQLK     T            F       F    ++PY+ SP+ +
Sbjct: 159 RQLKVLQKRTNVPGLKQFRGRRFNPYMGYRFRRPFMSPYMYSPYGY 204

[Close]
BLAST of MELO.jh100859.1.t1 vs. ExPASy Swiss-Prot
Match: Q9LX90 (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.0e-24
Identity = 62/106 (58.49%), Postives = 70/106 (66.04%), Query Frame = 0 

Query: 22  VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 81
           VDYA TPEEVQ HFQ+CGTVNRVTIL +KFG PKGFAYVEFVE EAVQEAL LNE+ELHG
Sbjct: 96  VDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHG 155

Query: 82  RQLKPASNMTTPENSALGNNPTFASISSPEFDAQ-LNPYILSPFNH 127
           RQLK +   T        +   F       F    + PY  SP+ +
Sbjct: 156 RQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPYGY 201

[Close]
BLAST of MELO.jh100859.1.t1 vs. ExPASy Swiss-Prot
Match: O14327 (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pab2 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.6e-17
Identity = 46/79 (58.23%), Postives = 53/79 (67.09%), Query Frame = 0 

Query: 22  VDYAYTPEEVQQHFQSCGTVNRVTILTNKF-GHPKGFAYVEFVEAEAVQEALLLNETELH 81
           VDY+ TPEE+Q HF SCG+VNRVTIL +KF GHPKGFAY+EF E   V  ALLLN + LH
Sbjct: 62  VDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLH 121

Query: 82  GRQLKPASNMTTPENSALG 100
            R LK     T     + G
Sbjct: 122 ERPLKVTPKRTNVPGMSRG 140

[Close]
BLAST of MELO.jh100859.1.t1 vs. ExPASy Swiss-Prot
Match: Q7KNF2 (Polyadenylate-binding protein 2 OS=Drosophila melanogaster OX=7227 GN=Pabp2 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.5e-15
Identity = 41/71 (57.75%), Postives = 49/71 (69.01%), Query Frame = 0 

Query: 22  VDYAYTPEEVQQHFQSCGTVNRVTILTNKF-GHPKGFAYVEFVEAEAVQEALLLNETELH 81
           VDY  + EE++ HF  CGT+NRVTIL NK  GHPKGFAY+EF   E V+ AL +NET   
Sbjct: 103 VDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFR 162

Query: 82  GRQLKPASNMT 92
           GRQ+K  S  T
Sbjct: 163 GRQIKVMSKRT 173

[Close]
BLAST of MELO.jh100859.1.t1 vs. ExPASy TrEMBL
Match: A0A5A7SK28 (Polyadenylate-binding protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold581G00430 PE=4 SV=1)

HSP 1 Score: 134 bits (336), Expect = 1.78e-37
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 22 VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 81
          VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHG
Sbjct: 7  VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 66

Query: 82 RQLK 85
          RQLK
Sbjct: 67 RQLK 70

[Close]
BLAST of MELO.jh100859.1.t1 vs. ExPASy TrEMBL
Match: A0A5D3DGW2 (Polyadenylate-binding protein 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115G00370 PE=4 SV=1)

HSP 1 Score: 128 bits (322), Expect = 2.35e-35
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0 

Query: 22 VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 81
          VDYA TPEEVQQHFQSCGTVNRVTILT+KFGHPKGFAYVEFVEAEAVQEALLLNETELHG
Sbjct: 7  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 66

Query: 82 RQLK 85
          RQLK
Sbjct: 67 RQLK 70

[Close]
BLAST of MELO.jh100859.1.t1 vs. ExPASy TrEMBL
Match: A0A1S3CMM9 (polyadenylate-binding protein 1-like OS=Cucumis melo OX=3656 GN=LOC103502641 PE=4 SV=1)

HSP 1 Score: 126 bits (317), Expect = 1.43e-34
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0 

Query: 22 VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 81
          VDYA TPEEV+QHFQSCGTVNRVTILT+KFGHPKGFAYVEFVEAEAVQEALLLNET+LHG
Sbjct: 7  VDYACTPEEVEQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETKLHG 66

Query: 82 RQLKPA 87
          RQLK A
Sbjct: 67 RQLKVA 72

[Close]
BLAST of MELO.jh100859.1.t1 vs. ExPASy TrEMBL
Match: A0A5A7V432 (Polyadenylate-binding protein 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G003430 PE=4 SV=1)

HSP 1 Score: 128 bits (322), Expect = 2.31e-34
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0 

Query: 22  VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 81
           VDYA TPEEVQQHFQSCGTVNRVTILT+KFGHPKGFAYVEFVEAEAVQEALLLNETELHG
Sbjct: 84  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 143

Query: 82  RQLK 85
           RQLK
Sbjct: 144 RQLK 147

[Close]
BLAST of MELO.jh100859.1.t1 vs. ExPASy TrEMBL
Match: A0A6J1BTA9 (polyadenylate-binding protein 3-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111005528 PE=4 SV=1)

HSP 1 Score: 125 bits (315), Expect = 7.44e-34
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 0 

Query: 22 VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 81
          VDYA TPEEVQQHFQSCGTVNRVTILT+KFGHPKGFAYVEF+EAEAVQEALLLNE+ELHG
Sbjct: 3  VDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFLEAEAVQEALLLNESELHG 62

Query: 82 RQLK 85
          RQLK
Sbjct: 63 RQLK 66

[Close]
BLAST of MELO.jh100859.1.t1 vs. TAIR 10
Match: AT5G51120.1 (polyadenylate-binding protein 1 )

HSP 1 Score: 119.8 bits (299), Expect = 2.3e-27
Identity = 56/70 (80.00%), Postives = 63/70 (90.00%), Query Frame = 0 

Query: 22  VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 81
           VDYA TPEEVQQHFQSCGTVNRVTILT+KFG PKGFAYVEFVE EAVQ +L+LNE+ELHG
Sbjct: 110 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHG 169

Query: 82  RQLKPASNMT 92
           RQ+K ++  T
Sbjct: 170 RQIKVSAKRT 179

[Close]
BLAST of MELO.jh100859.1.t1 vs. TAIR 10
Match: AT5G65260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 119.8 bits (299), Expect = 2.3e-27
Identity = 63/106 (59.43%), Postives = 72/106 (67.92%), Query Frame = 0 

Query: 22  VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 81
           VDYA TPEEVQQHFQ+CGTV+RVTILT+KFG PKGFAYVEFVE EAVQEAL LNE+ELHG
Sbjct: 99  VDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHG 158

Query: 82  RQLKPASNMTTPENSALGNNPTFASISSPEFDAQ-LNPYILSPFNH 127
           RQLK     T            F       F    ++PY+ SP+ +
Sbjct: 159 RQLKVLQKRTNVPGLKQFRGRRFNPYMGYRFRRPFMSPYMYSPYGY 204

[Close]
BLAST of MELO.jh100859.1.t1 vs. TAIR 10
Match: AT5G51120.2 (polyadenylate-binding protein 1 )

HSP 1 Score: 119.8 bits (299), Expect = 2.3e-27
Identity = 56/70 (80.00%), Postives = 63/70 (90.00%), Query Frame = 0 

Query: 22  VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 81
           VDYA TPEEVQQHFQSCGTVNRVTILT+KFG PKGFAYVEFVE EAVQ +L+LNE+ELHG
Sbjct: 148 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHG 207

Query: 82  RQLKPASNMT 92
           RQ+K ++  T
Sbjct: 208 RQIKVSAKRT 217

[Close]
BLAST of MELO.jh100859.1.t1 vs. TAIR 10
Match: AT5G51120.3 (polyadenylate-binding protein 1 )

HSP 1 Score: 119.8 bits (299), Expect = 2.3e-27
Identity = 56/70 (80.00%), Postives = 63/70 (90.00%), Query Frame = 0 

Query: 22 VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 81
          VDYA TPEEVQQHFQSCGTVNRVTILT+KFG PKGFAYVEFVE EAVQ +L+LNE+ELHG
Sbjct: 25 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHG 84

Query: 82 RQLKPASNMT 92
          RQ+K ++  T
Sbjct: 85 RQIKVSAKRT 94

[Close]
BLAST of MELO.jh100859.1.t1 vs. TAIR 10
Match: AT5G10350.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 114.8 bits (286), Expect = 7.4e-26
Identity = 62/106 (58.49%), Postives = 70/106 (66.04%), Query Frame = 0 

Query: 22  VDYAYTPEEVQQHFQSCGTVNRVTILTNKFGHPKGFAYVEFVEAEAVQEALLLNETELHG 81
           VDYA TPEEVQ HFQ+CGTVNRVTIL +KFG PKGFAYVEFVE EAVQEAL LNE+ELHG
Sbjct: 96  VDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHG 155

Query: 82  RQLKPASNMTTPENSALGNNPTFASISSPEFDAQ-LNPYILSPFNH 127
           RQLK +   T        +   F       F    + PY  SP+ +
Sbjct: 156 RQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPYGY 201

The following BLAST results are available for this feature:
BLAST of MELO.jh100859.1.t1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0026054.13.67e-37100.00polyadenylate-binding protein 1-like [Cucumis melo var. makuwa][more]
XP_011657966.13.43e-3593.94polyadenylate-binding protein 3 isoform X2 [Cucumis sativus][more]
TYK22852.14.86e-3596.88polyadenylate-binding protein 3-like isoform X2 [Cucumis melo var. makuwa][more]
XP_038882560.19.76e-3593.94polyadenylate-binding protein 3-like isoform X3 [Benincasa hispida][more]
XP_008464885.12.95e-3492.42PREDICTED: polyadenylate-binding protein 1-like [Cucumis melo][more]
BLAST of MELO.jh100859.1.t1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q93VI43.2e-2680.00Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV... [more]
Q9FJN93.2e-2659.43Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV... [more]
Q9LX901.0e-2458.49Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV... [more]
O143273.6e-1758.23Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC ... [more]
Q7KNF21.5e-1557.75Polyadenylate-binding protein 2 OS=Drosophila melanogaster OX=7227 GN=Pabp2 PE=1... [more]
BLAST of MELO.jh100859.1.t1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SK281.78e-37100.00Polyadenylate-binding protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3DGW22.35e-3596.88Polyadenylate-binding protein 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1... [more]
A0A1S3CMM91.43e-3492.42polyadenylate-binding protein 1-like OS=Cucumis melo OX=3656 GN=LOC103502641 PE=... [more]
A0A5A7V4322.31e-3496.88Polyadenylate-binding protein 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1... [more]
A0A6J1BTA97.44e-3493.75polyadenylate-binding protein 3-like isoform X2 OS=Momordica charantia OX=3673 G... [more]
BLAST of MELO.jh100859.1.t1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G51120.12.3e-2780.00polyadenylate-binding protein 1 [more]
AT5G65260.12.3e-2759.43RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G51120.22.3e-2780.00polyadenylate-binding protein 1 [more]
AT5G51120.32.3e-2780.00polyadenylate-binding protein 1 [more]
AT5G10350.27.4e-2658.49RNA-binding (RRM/RBD/RNP motifs) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 176..181
NoneNo IPR availablePANTHERPTHR23236:SF80POLYADENYLATE-BINDING PROTEIN 3coord: 22..128
NoneNo IPR availablePANTHERPTHR23236EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4Hcoord: 22..128
NoneNo IPR availableCDDcd12306RRM_II_PABPscoord: 22..85
e-value: 2.16474E-39
score: 127.022
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 13..87
e-value: 5.7E-12
score: 55.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 23..85
e-value: 1.9E-12
score: 46.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 11..85
score: 12.696778
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 18..89
e-value: 2.5E-18
score: 68.0
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 23..85

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO.jh100859.1MELO.jh100859.1gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO.jh100859.1.t1.exon1MELO.jh100859.1.t1.exon1exon
MELO.jh100859.1.t1.exon2MELO.jh100859.1.t1.exon2exon
MELO.jh100859.1.t1.exon3MELO.jh100859.1.t1.exon3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.MELO.jh100859.1.t1cds.MELO.jh100859.1.t1CDS
cds.MELO.jh100859.1.t1cds.MELO.jh100859.1.t1_2CDS
cds.MELO.jh100859.1.t1cds.MELO.jh100859.1.t1_3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO.jh100859.1.t1MELO.jh100859.1.t1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding