MELO.jh034707.1.t1 (mRNA) Melon (Harukei-3) v1.41

Overview
NameMELO.jh034707.1.t1
TypemRNA
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description(thale cress) hypothetical protein
Locationscaffold_mitochondria: 678864 .. 680879 (-)
Sequence length2016
RNA-Seq ExpressionMELO.jh034707.1.t1
SyntenyMELO.jh034707.1.t1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
GATTTGTTGTGGATTGGATGATGGAAAAACCAGCAAGCCGCTTGACCTTTCATACGAGGTCAAGGGTCAAAGAATTTGAGTTGTGAAAAGGTTGGAAGATCTGGCCAAAGAAGGTGATAGCCCTGTAGATTCGTTCCCATGGTTCGATCCTTCCCAGTCAAACGCGGCGTGTTCGAATTCTGATCGCTTTTACGCGAGAAAGGGGGACCACCCTCTAAGCCTAAGTATTCCTCAATGACCGATAGCGTACAAGTACCGTGAGGGAAAGGTGAAAAGAACCCTATTTAGGGAGTGCAATAGAGAACCTGAGATCCGATGCTTTCAATCAGTCGAAGGAGCGGCAAGCCTTGACTTGAGATTCTCTTAGTCAAGCTATCTCACTCTAACGGCGTACCTTTTGCATGATGGGTCAGCGAGAAAATGGGAACTGCGGCTTAAGCCATTAGGTGTAGGCGCTTTCCAGAGGTGGAAGATTCTCGTTCTTCCTATTTGACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGTATGATGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACCCCAGGGAAACTCCGAATACAGGCCTAGATCGTTTGTACAGACAGACTTTTGGGGTGCTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATCACTTAGTGGAAAAGGAAGTTCTCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGCAGCCATCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAGCTCCATGGCACCGAAAATGTCTCGGGGCTCAAGTGATTCACCGAAGCGACGAGACCTTGAAAGCAGCTTTTTCAAGTGTCAGTAGCGGGACGTTCTGTCAATCGGGGAAGGTTTTTGGTGACAAGACCTGGAGATATCAGAAGTGAGAATGCTGACATGAGTAACGAGAAATCCTGTGAAAAACACGATCGCCTGCCAGTGGAAGGCTTTCTGCGTTCAGTCAATCTACGCAGAGTGAATCGGTCCCTAAGGAACCCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTAGCTTTGACTACAGAACCATGCCTGTCTGTTGGAGCGAATAGGATGATCGGGCCGAGGGCAGCCCCCTCTTCCCCTCACTCTCCTTTCCCGCTCCGTGGGATTCACCTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGTCCGGTCGCCCTACGCGACTGGCGCGGCCGAAAGGCGAAACTCTCGTCTCCGTTTGGCGACCGCTACGTGGGGGGCGGACACCTTTTTTTGTTATCTAAAGGCTTTGACTCTGAAGTGGGCTTTGACTCGGCCCAGCGGGCGAGGCGGGCTCCGGCTCCGCGCACCTGCTGACACCTTTCTCAGCACTTGAGAGTGTGCGCTTTCGTTTTCGAATGTCTCGTTCAGCCTCACGAGTCTACAAGCCTTTCTCATTCCAGTGCTCGCCTTTGAGTAGGGGTCCCGAGAGAGCGTACCGCCATAGTCGTGAGTCTGTTTATAGTCGCGACTCTTGTCATAGTGAACAAGGTTGAAACTTCCAGGAAAAAACTTCTTTTTGGGAGGGCGATCCTCCCGGTGAACTGACCGTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTTCTTAGGAAAGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGATGTATAGAGTCTGACACCTGCCCGGTGCTGGAA

mRNA sequence

GATTTGTTGTGGATTGGATGATGGAAAAACCAGCAAGCCGCTTGACCTTTCATACGAGGTCAAGGGTCAAAGAATTTGAGTTGTGAAAAGGTTGGAAGATCTGGCCAAAGAAGGTGATAGCCCTGTAGATTCGTTCCCATGGTTCGATCCTTCCCAGTCAAACGCGGCGTGTTCGAATTCTGATCGCTTTTACGCGAGAAAGGGGGACCACCCTCTAAGCCTAAGTATTCCTCAATGACCGATAGCGTACAAGTACCGTGAGGGAAAGGTGAAAAGAACCCTATTTAGGGAGTGCAATAGAGAACCTGAGATCCGATGCTTTCAATCAGTCGAAGGAGCGGCAAGCCTTGACTTGAGATTCTCTTAGTCAAGCTATCTCACTCTAACGGCGTACCTTTTGCATGATGGGTCAGCGAGAAAATGGGAACTGCGGCTTAAGCCATTAGGTGTAGGCGCTTTCCAGAGGTGGAAGATTCTCGTTCTTCCTATTTGACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGTATGATGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACCCCAGGGAAACTCCGAATACAGGCCTAGATCGTTTGTACAGACAGACTTTTGGGGTGCTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATCACTTAGTGGAAAAGGAAGTTCTCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGCAGCCATCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAGCTCCATGGCACCGAAAATGTCTCGGGGCTCAAGTGATTCACCGAAGCGACGAGACCTTGAAAGCAGCTTTTTCAAGTGTCAGTAGCGGGACGTTCTGTCAATCGGGGAAGGTTTTTGGTGACAAGACCTGGAGATATCAGAAGTGAGAATGCTGACATGAGTAACGAGAAATCCTGTGAAAAACACGATCGCCTGCCAGTGGAAGGCTTTCTGCGTTCAGTCAATCTACGCAGAGTGAATCGGTCCCTAAGGAACCCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTAGCTTTGACTACAGAACCATGCCTGTCTGTTGGAGCGAATAGGATGATCGGGCCGAGGGCAGCCCCCTCTTCCCCTCACTCTCCTTTCCCGCTCCGTGGGATTCACCTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGTCCGGTCGCCCTACGCGACTGGCGCGGCCGAAAGGCGAAACTCTCGTCTCCGTTTGGCGACCGCTACGTGGGGGGCGGACACCTTTTTTTGTTATCTAAAGGCTTTGACTCTGAAGTGGGCTTTGACTCGGCCCAGCGGGCGAGGCGGGCTCCGGCTCCGCGCACCTGCTGACACCTTTCTCAGCACTTGAGAGTGTGCGCTTTCGTTTTCGAATGTCTCGTTCAGCCTCACGAGTCTACAAGCCTTTCTCATTCCAGTGCTCGCCTTTGAGTAGGGGTCCCGAGAGAGCGTACCGCCATAGTCGTGAGTCTGTTTATAGTCGCGACTCTTGTCATAGTGAACAAGGTTGAAACTTCCAGGAAAAAACTTCTTTTTGGGAGGGCGATCCTCCCGGTGAACTGACCGTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTTCTTAGGAAAGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGATGTATAGAGTCTGACACCTGCCCGGTGCTGGAA

Coding sequence (CDS)

ATGACAACCAGGAGGTGGGCTTGGAAGCAGCCATCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAGCTCCATGGCACCGAAAATGTCTCGGGGCTCAAGTGATTCACCGAAGCGACGAGACCTTGAAAGCAGCTTTTTCAAGTGTCAGTAG

Protein sequence

MTTRRWAWKQPSFEESVIAHWSSSMAPKMSRGSSDSPKRRDLESSFFKCQ
Homology
[Close]
BLAST of MELO.jh034707.1.t1 vs. NCBI nr
Match: AFK37255.1 (unknown [Medicago truncatula])

HSP 1 Score: 88.6 bits (218), Expect = 1.26e-21
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 0 

Query: 1  MTTRRWAWKQPSFEESVIAHWSSSMAPKMSRGSSDSPKRRDLES 44
          MTTRRWAWKQPSFEESVIAHWSSSMAPKM +GSSDSPKRRDLES
Sbjct: 1  MTTRRWAWKQPSFEESVIAHWSSSMAPKMYQGSSDSPKRRDLES 44

[Close]
BLAST of MELO.jh034707.1.t1 vs. NCBI nr
Match: AFK45797.1 (unknown [Lotus japonicus])

HSP 1 Score: 88.6 bits (218), Expect = 1.26e-21
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 0 

Query: 1  MTTRRWAWKQPSFEESVIAHWSSSMAPKMSRGSSDSPKRRDLES 44
          MTTRRWAWKQPSFEESVIAHWSSSMAPKM +GSSDSPKRRDLES
Sbjct: 1  MTTRRWAWKQPSFEESVIAHWSSSMAPKMYQGSSDSPKRRDLES 44

[Close]
BLAST of MELO.jh034707.1.t1 vs. NCBI nr
Match: PNY16249.1 (hypothetical protein L195_g012964 [Trifolium pratense])

HSP 1 Score: 88.6 bits (218), Expect = 5.62e-21
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 0 

Query: 1  MTTRRWAWKQPSFEESVIAHWSSSMAPKMSRGSSDSPKRRDLES 44
          MTTRRWAWKQPSFEESVIAHWSSSMAPKM +GSSDSPKRRDLES
Sbjct: 1  MTTRRWAWKQPSFEESVIAHWSSSMAPKMYQGSSDSPKRRDLES 44

[Close]
BLAST of MELO.jh034707.1.t1 vs. NCBI nr
Match: CAG1865677.1 (unnamed protein product [Musa acuminata subsp. malaccensis])

HSP 1 Score: 86.7 bits (213), Expect = 7.70e-21
Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = 0 

Query: 1  MTTRRWAWKQPSFEESVIAHWSSSMAPKMSRGSSDSPKRRDLESS 45
          MTTRRWAWKQPSFEESVIAHWSSS+APKMS+GSSDSPKRRDL  S
Sbjct: 1  MTTRRWAWKQPSFEESVIAHWSSSIAPKMSQGSSDSPKRRDLAKS 45

[Close]
BLAST of MELO.jh034707.1.t1 vs. NCBI nr
Match: RDY12382.1 (hypothetical protein CR513_02836, partial [Mucuna pruriens])

HSP 1 Score: 84.3 bits (207), Expect = 1.69e-18
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 0 

Query: 1  MTTRRWAWKQPSFEESVIAHWSSSMAPKMSRGSSDSPKRRDLE 43
          MTT RWAWKQPSFEESVIAHWSSSMAPKM +GSSDSPKRRDLE
Sbjct: 1  MTTWRWAWKQPSFEESVIAHWSSSMAPKMYQGSSDSPKRRDLE 43

[Close]
BLAST of MELO.jh034707.1.t1 vs. ExPASy TrEMBL
Match: A0A453H2T8 (Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1)

HSP 1 Score: 104 bits (259), Expect = 2.08e-28
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 1  MTTRRWAWKQPSFEESVIAHWSSSMAPKMSRGSSDSPKRRDLESSFFKCQ 50
          MTTRRWAWKQPSFEESVIAHWSSSMAPKMS+GSSDSPKRRDLESSFFKCQ
Sbjct: 1  MTTRRWAWKQPSFEESVIAHWSSSMAPKMSQGSSDSPKRRDLESSFFKCQ 50

[Close]
BLAST of MELO.jh034707.1.t1 vs. ExPASy TrEMBL
Match: A0A453FYZ1 (Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1)

HSP 1 Score: 103 bits (256), Expect = 5.97e-28
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 1  MTTRRWAWKQPSFEESVIAHWSSSMAPKMSRGSSDSPKRRDLESSFFKCQ 50
          MTTRRWAWKQPSFEESVI+HWSSSMAPKMS+GSSDSPKRRDLESSFFKCQ
Sbjct: 1  MTTRRWAWKQPSFEESVISHWSSSMAPKMSQGSSDSPKRRDLESSFFKCQ 50

[Close]
BLAST of MELO.jh034707.1.t1 vs. ExPASy TrEMBL
Match: A0A452Z3Z6 (Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1)

HSP 1 Score: 102 bits (255), Expect = 8.49e-28
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 1  MTTRRWAWKQPSFEESVIAHWSSSMAPKMSRGSSDSPKRRDLESSFFKCQ 50
          MTTRRWAWKQPSFEESVIAHWSSSMAPK+S+GSSDSPKRRDLESSFFKCQ
Sbjct: 1  MTTRRWAWKQPSFEESVIAHWSSSMAPKISQGSSDSPKRRDLESSFFKCQ 50

[Close]
BLAST of MELO.jh034707.1.t1 vs. ExPASy TrEMBL
Match: A0A453JU89 (Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1)

HSP 1 Score: 101 bits (251), Expect = 3.47e-27
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 1  MTTRRWAWKQPSFEESVIAHWSSSMAPKMSRGSSDSPKRRDLESSFFKCQ 50
          MTTRRWAWKQPSFEESVIAHWSSSMAPKMS+GSSDSPK+RDLESSFFKC+
Sbjct: 1  MTTRRWAWKQPSFEESVIAHWSSSMAPKMSQGSSDSPKQRDLESSFFKCK 50

[Close]
BLAST of MELO.jh034707.1.t1 vs. ExPASy TrEMBL
Match: I3SAG3 (Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.10e-22
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 0 

Query: 1  MTTRRWAWKQPSFEESVIAHWSSSMAPKMSRGSSDSPKRRDLES 44
          MTTRRWAWKQPSFEESVIAHWSSSMAPKM +GSSDSPKRRDLES
Sbjct: 1  MTTRRWAWKQPSFEESVIAHWSSSMAPKMYQGSSDSPKRRDLES 44

The following BLAST results are available for this feature:
BLAST of MELO.jh034707.1.t1 vs. NCBI nr
Match NameE-valueIdentityDescription
AFK37255.11.26e-2195.45unknown [Medicago truncatula][more]
AFK45797.11.26e-2195.45unknown [Lotus japonicus][more]
PNY16249.15.62e-2195.45hypothetical protein L195_g012964 [Trifolium pratense][more]
CAG1865677.17.70e-2191.11unnamed protein product [Musa acuminata subsp. malaccensis][more]
RDY12382.11.69e-1893.02hypothetical protein CR513_02836, partial [Mucuna pruriens][more]
BLAST of MELO.jh034707.1.t1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh034707.1.t1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A453H2T82.08e-2898.00Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 S... [more]
A0A453FYZ15.97e-2896.00Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 S... [more]
A0A452Z3Z68.49e-2896.00Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 S... [more]
A0A453JU893.47e-2794.00Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 S... [more]
I3SAG36.10e-2295.45Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1[more]
BLAST of MELO.jh034707.1.t1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..50

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO.jh034707.1MELO.jh034707.1gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO.jh034707.1.t1.exonMELO.jh034707.1.t1.exonexon


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO.jh034707.1.t1.stop_codonMELO.jh034707.1.t1.stop_codonstop_codon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO.jh034707.1.t1.cdsMELO.jh034707.1.t1.cdsCDS


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO.jh034707.1.t1.start_codonMELO.jh034707.1.t1.start_codonstart_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO.jh034707.1.t1MELO.jh034707.1.t1-proteinpolypeptide