MELO.jh034197.1.t1 (mRNA) Melon (Harukei-3) v1.41

Overview
NameMELO.jh034197.1.t1
TypemRNA
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationscaffold_mitochondria: 677860 .. 679208 (-)
Sequence length1349
RNA-Seq ExpressionMELO.jh034197.1.t1
SyntenyMELO.jh034197.1.t1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
GTACCGCCATAGTCGTGAGTCTGTTTATAGTCGCGACTCTTGTCATAGTGAACAAGGTTGAAACTTCCAGGAAAAAACTTCTTTTTGGGAGGGCGATCCTCCCGGTGAACTGACCGTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTTCTTAGGAAAGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTGATAAGCTTTGAATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGCATAAGTAGCGACCTGCACGAATGGTGTCACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAAATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTAAGACCCCGTGCACCTTCACTATAGCTTCGCAGTGACAACCTTGATCGAATGTGTAGGATAGGTGGGAGGTGGTGACACACAACGACCAATCCTGAAAGACCACTCTTTCGTCTAAGGATGCCTAACCGCCGCACCGAGTTTTCGGGGGGGGGCGGGACACTGCAAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGGTGTGCGAAGGTAGGCTCAAGCTCAGATTCTGCTCGTGAGCGTAATGGTATAAGCCTGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGAGTTCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATAACAGGCTGATGACTCCCAAGAGCTCTTATTGACGGAGTCGTTTGGCACCTCGATGTCGACTCATCACATCCTGGGGTTGAAGAAGGTCCCAAGGGTTCGGTTGTTCGCCGATGAAAGTGGTACGTGAGTTGGGTTTAGAACGTCGTGAGACAGTTCGGTTCCTATCTACCGTTGGTGTGAAAGGGAGAACTGCGAGGAGCCAACCCTAGTACGAGAGGACTGGGTTGGGCCAACCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGTATGGAAGAACCGCTGCGCCGCGGGAAATCCTTCTCTATACAAGTTCTCGGACGAGGTTTTTGAACATCACTTCGATAGGCGAGAGGTGTAAGCACCGCGAGGTGTTCAGCGATCTCGTACTAAACGAAAGGACTT

mRNA sequence

GTACCGCCATAGTCGTGAGTCTGTTTATAGTCGCGACTCTTGTCATAGTGAACAAGGTTGAAACTTCCAGGAAAAAACTTCTTTTTGGGAGGGCGATCCTCCCGGTGAACTGACCGTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTTCTTAGGAAAGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTGATAAGCTTTGAATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGCATAAGTAGCGACCTGCACGAATGGTGTCACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAAATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTAAGACCCCGTGCACCTTCACTATAGCTTCGCAGTGACAACCTTGATCGAATGTGTAGGATAGGTGGGAGGTGGTGACACACAACGACCAATCCTGAAAGACCACTCTTTCGTCTAAGGATGCCTAACCGCCGCACCGAGTTTTCGGGGGGGGGCGGGACACTGCAAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGGTGTGCGAAGGTAGGCTCAAGCTCAGATTCTGCTCGTGAGCGTAATGGTATAAGCCTGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGAGTTCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATAACAGGCTGATGACTCCCAAGAGCTCTTATTGACGGAGTCGTTTGGCACCTCGATGTCGACTCATCACATCCTGGGGTTGAAGAAGGTCCCAAGGGTTCGGTTGTTCGCCGATGAAAGTGGTACGTGAGTTGGGTTTAGAACGTCGTGAGACAGTTCGGTTCCTATCTACCGTTGGTGTGAAAGGGAGAACTGCGAGGAGCCAACCCTAGTACGAGAGGACTGGGTTGGGCCAACCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGTATGGAAGAACCGCTGCGCCGCGGGAAATCCTTCTCTATACAAGTTCTCGGACGAGGTTTTTGAACATCACTTCGATAGGCGAGAGGTGTAAGCACCGCGAGGTGTTCAGCGATCTCGTACTAAACGAAAGGACTT

Coding sequence (CDS)

ATGAAAGTGGTACGTGAGTTGGGTTTAGAACGTCGTGAGACAGTTCGGTTCCTATCTACCGTTGGTGTGAAAGGGAGAACTGCGAGGAGCCAACCCTAG

Protein sequence

MKVVRELGLERRETVRFLSTVGVKGRTARSQP
Homology
[Close]
BLAST of MELO.jh034197.1.t1 vs. NCBI nr
Match: KAA0031849.1 (Uncharacterized protein E6C27_scaffold660G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 48.9 bits (115), Expect = 4.73e-06
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 0 

Query: 1  MKVVRELGLERRETVRFLSTVGVKGRTARSQP 32
          +KVV ELGLER +TVRFLSTV VKG+TA SQP
Sbjct: 60 IKVVHELGLERCQTVRFLSTVDVKGKTAMSQP 91

[Close]
BLAST of MELO.jh034197.1.t1 vs. NCBI nr
Match: KAA0062891.1 (Uncharacterized protein E6C27_scaffold2911G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 47.4 bits (111), Expect = 1.91e-05
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 1  MKVVRELGLERRETVRFLSTVGVKGRTARSQP 32
          +KVV ELGLER +TVRFLSTV VKG+T  SQP
Sbjct: 60 IKVVHELGLERCQTVRFLSTVDVKGKTVMSQP 91

[Close]
BLAST of MELO.jh034197.1.t1 vs. NCBI nr
Match: KAA0056226.1 (Uncharacterized protein E6C27_scaffold967G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 46.6 bits (109), Expect = 3.83e-05
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 1  MKVVRELGLERRETVRFLSTVGVKGRTARSQP 32
          +KVV ELGLER +TVRFL TV VKG+TA SQP
Sbjct: 60 IKVVHELGLERCQTVRFLFTVDVKGKTAMSQP 91

[Close]
BLAST of MELO.jh034197.1.t1 vs. NCBI nr
Match: KAA0056234.1 (Uncharacterized protein E6C27_scaffold2346G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 48.5 bits (114), Expect = 4.77e-05
Identity = 24/32 (75.00%), Postives = 28/32 (87.50%), Query Frame = 0 

Query: 1   MKVVRELGLERRETVRFLSTVGVKGRTARSQP 32
           +KVV ELGLER +TVRFLST+ VKG+TA SQP
Sbjct: 302 IKVVHELGLERCQTVRFLSTIDVKGKTAMSQP 333

[Close]
BLAST of MELO.jh034197.1.t1 vs. ExPASy TrEMBL
Match: A0A5A7SRD4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold660G00070 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 2.29e-06
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 0 

Query: 1  MKVVRELGLERRETVRFLSTVGVKGRTARSQP 32
          +KVV ELGLER +TVRFLSTV VKG+TA SQP
Sbjct: 60 IKVVHELGLERCQTVRFLSTVDVKGKTAMSQP 91

[Close]
BLAST of MELO.jh034197.1.t1 vs. ExPASy TrEMBL
Match: A0A5A7VB26 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2911G00060 PE=4 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 9.23e-06
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 1  MKVVRELGLERRETVRFLSTVGVKGRTARSQP 32
          +KVV ELGLER +TVRFLSTV VKG+T  SQP
Sbjct: 60 IKVVHELGLERCQTVRFLSTVDVKGKTVMSQP 91

[Close]
BLAST of MELO.jh034197.1.t1 vs. ExPASy TrEMBL
Match: A0A5A7UPI0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold967G00080 PE=4 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.85e-05
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 1  MKVVRELGLERRETVRFLSTVGVKGRTARSQP 32
          +KVV ELGLER +TVRFL TV VKG+TA SQP
Sbjct: 60 IKVVHELGLERCQTVRFLFTVDVKGKTAMSQP 91

[Close]
BLAST of MELO.jh034197.1.t1 vs. ExPASy TrEMBL
Match: A0A5A7UM16 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2346G00010 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 2.31e-05
Identity = 24/32 (75.00%), Postives = 28/32 (87.50%), Query Frame = 0 

Query: 1   MKVVRELGLERRETVRFLSTVGVKGRTARSQP 32
           +KVV ELGLER +TVRFLST+ VKG+TA SQP
Sbjct: 302 IKVVHELGLERCQTVRFLSTIDVKGKTAMSQP 333

[Close]
BLAST of MELO.jh034197.1.t1 vs. ExPASy TrEMBL
Match: A0A699J0C1 (Uncharacterized protein (Fragment) OS=Tanacetum cinerariifolium OX=118510 GN=Tci_573417 PE=4 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 5.32e-04
Identity = 22/24 (91.67%), Postives = 24/24 (100.00%), Query Frame = 0 

Query: 1   MKVVRELGLERRETVRFLSTVGVK 24
           ++VVRELGLERRETVRFLSTVGVK
Sbjct: 317 IQVVRELGLERRETVRFLSTVGVK 340

The following BLAST results are available for this feature:
BLAST of MELO.jh034197.1.t1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0031849.14.73e-0678.13Uncharacterized protein E6C27_scaffold660G00070 [Cucumis melo var. makuwa][more]
KAA0062891.11.91e-0575.00Uncharacterized protein E6C27_scaffold2911G00060 [Cucumis melo var. makuwa][more]
KAA0056226.13.83e-0575.00Uncharacterized protein E6C27_scaffold967G00080 [Cucumis melo var. makuwa][more]
KAA0056234.14.77e-0575.00Uncharacterized protein E6C27_scaffold2346G00010 [Cucumis melo var. makuwa][more]
BLAST of MELO.jh034197.1.t1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh034197.1.t1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SRD42.29e-0678.13Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VB269.23e-0675.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UPI01.85e-0575.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UM162.31e-0575.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A699J0C15.32e-0491.67Uncharacterized protein (Fragment) OS=Tanacetum cinerariifolium OX=118510 GN=Tci... [more]
BLAST of MELO.jh034197.1.t1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO.jh034197.1MELO.jh034197.1gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO.jh034197.1.t1.exonMELO.jh034197.1.t1.exonexon


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO.jh034197.1.t1.stop_codonMELO.jh034197.1.t1.stop_codonstop_codon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO.jh034197.1.t1.cdsMELO.jh034197.1.t1.cdsCDS


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO.jh034197.1.t1.start_codonMELO.jh034197.1.t1.start_codonstart_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO.jh034197.1.t1MELO.jh034197.1.t1-proteinpolypeptide