MELO.jh023311.1.t1 (mRNA) Melon (Harukei-3) v1.41

Overview
NameMELO.jh023311.1.t1
TypemRNA
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr10: 27396100 .. 27396301 (+)
Sequence length202
RNA-Seq ExpressionMELO.jh023311.1.t1
SyntenyMELO.jh023311.1.t1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TACAAACCTTCTTTATGTCAATTATATTTAGCCTCATTGGAGGGAGAACTGTGGTGCGACCCACAACGGTCCAAAAGATGGCCACTGTTTTCAACGAGTGGCGAACGCTCGTCCGGTGTCAAAAACCAGTGTAAATGCACTTACAGCGAAGGAAATGGGTCGAGCTCGAGGACTTCCGGTGTTCGTCCCATGAAAACGCGAG

mRNA sequence

TACAAACCTTCTTTATGTCAATTATATTTAGCCTCATTGGAGGGAGAACTGTGGTGCGACCCACAACGGTCCAAAAGATGGCCACTGTTTTCAACGAGTGGCGAACGCTCGTCCGGTGTCAAAAACCAGTGTAAATGCACTTACAGCGAAGGAAATGGGTCGAGCTCGAGGACTTCCGGTGTTCGTCCCATGAAAACGCGAG

Coding sequence (CDS)

ATGTCAATTATATTTAGCCTCATTGGAGGGAGAACTGTGGTGCGACCCACAACGGTCCAAAAGATGGCCACTGTTTTCAACGAGTGGCGAACGCTCGTCCGGTGTCAAAAACCAGTGTAA

Protein sequence

MSIIFSLIGGRTVVRPTTVQKMATVFNEWRTLVRCQKPV
Homology
[Close]
BLAST of MELO.jh023311.1.t1 vs. NCBI nr
Match: TYK22521.1 (uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 4.39e-07
Identity = 25/33 (75.76%), Postives = 27/33 (81.82%), Query Frame = 0 

Query: 7   LIGGRTVVRPTTVQKMATVFNEWRTLVRCQKPV 39
           L+GGRTVVR  TVQKMA   NEWR LVRCQKP+
Sbjct: 150 LVGGRTVVRHKTVQKMANASNEWRMLVRCQKPL 182

[Close]
BLAST of MELO.jh023311.1.t1 vs. ExPASy TrEMBL
Match: A0A5D3DFP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00220 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.12e-07
Identity = 25/33 (75.76%), Postives = 27/33 (81.82%), Query Frame = 0 

Query: 7   LIGGRTVVRPTTVQKMATVFNEWRTLVRCQKPV 39
           L+GGRTVVR  TVQKMA   NEWR LVRCQKP+
Sbjct: 150 LVGGRTVVRHKTVQKMANASNEWRMLVRCQKPL 182

[Close]
BLAST of MELO.jh023311.1.t1 vs. ExPASy TrEMBL
Match: A0A5D3CGX3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00560 PE=4 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 7.38e-04
Identity = 21/31 (67.74%), Postives = 22/31 (70.97%), Query Frame = 0 

Query: 7   LIGGRTVVRPTTVQKMATVFNEWRTLVRCQK 37
           L+GGR  VR  TVQKM    NEWRTLV CQK
Sbjct: 123 LVGGRAKVRLKTVQKMVNTSNEWRTLVWCQK 153

The following BLAST results are available for this feature:
BLAST of MELO.jh023311.1.t1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK22521.14.39e-0775.76uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa][more]
BLAST of MELO.jh023311.1.t1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh023311.1.t1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DFP22.12e-0775.76Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CGX37.38e-0467.74Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of MELO.jh023311.1.t1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO.jh023311.1MELO.jh023311.1gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO.jh023311.1.t1.exonMELO.jh023311.1.t1.exonexon


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO.jh023311.1.t1.start_codonMELO.jh023311.1.t1.start_codonstart_codon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO.jh023311.1.t1.cdsMELO.jh023311.1.t1.cdsCDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO.jh023311.1.t1.stop_codonMELO.jh023311.1.t1.stop_codonstop_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO.jh023311.1.t1MELO.jh023311.1.t1-proteinpolypeptide