MELO.jh010154.1.t1 (mRNA) Melon (Harukei-3) v1.41

Overview
NameMELO.jh010154.1.t1
TypemRNA
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr05: 2933114 .. 2935202 (+)
Sequence length669
RNA-Seq ExpressionMELO.jh010154.1.t1
SyntenyMELO.jh010154.1.t1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTATGCCTTGAGGATTTTACTCACGTCGCATTCCCAAGAACCAAGAAGAAAACAAGACAAGAACCACTCGAAATGGGTCTGAATGAAAATACAATCCCAACCCATTTTTTGTTTGTCTGCTTCCCCAACCCCTCCCCTCTCTGTTTCTTTAATCATAAAAATATTTTTTTGTTCCCATATCCCAATACCCCAGATTGTCGAACACTTAGCCGTATCAATTGAAACTGCCACACAGAGACAGCCAACAATGCCAACCCATTTCAGATGGAACTCTCGCGGTGGGCTTCACATGCCTCCCATTTCCATATCACTACTGGTCAGTGCTTATCGAATCCATTGATTTTGTTCTTACATTCTTTCTGTCGTTTCCTTAACCATTTTGTGGTTAACACTTGCTTATACAATTTCTGATTTGCCATTCTGATTGTTAATTTAGATAATAATCCCTTCATTCTTTTAATATAAGATGTTGAGTTTTGTGTAAATTTATGCTGGAATTATACTGTCTACAATAACATCTTATGATATCTAGACAAACCCAAGACTAGATCTTGTTGTCTTTACTCAACATTGATTACCCAAAAATTATATGTCTAGATAACATTCTTATACGAAGTGGTATTAGAACTATATGGGCTTTGTGATTACGTCATCTTTTTTTTGAAAATGAAATCAATCATATCAACCTACAGATTTGCAATGTCTGGATTAGATATTTTGGGTAATTGGTCTTTAGTTGATAACAATTCATATGTCTCGATCAATGTGGTAATCAGCACTATGGGGGAGAAGAGATTCGATGGGGAAGGTGAGAATAAAAGTGCACCAAATCCCACAGTTACTCTGTAGATGTATTGAGATTATATTAAATGAATTAACGTCTGAAACTTTTGGTGAATTGATTTGGATGACAAGATATTAGAAGTTCAGATTCCTAACTTATCATTTTTCTTCTTTATTTGATTTGATAGAAGAGTGTTGAAAATATATTGAACTTGATCATTCGTCTGACAACTTAGATCCCTTTTTCTATTTTTGAGAATCATGCTTCTTTTCTTATATTTCTTTATTATGACGTTGAAAACATTAGAATTTTTTTAGCTCAATTTAAATAAAAAAACCAAATTCTTAAAAGCAGTTTTTTTCTAGCTTCCCAAATAAGTTTGGATATTGAAACCAAATTTAAAACAAAAGTTACAGAACAAACAAACTTAGGGATGAACCAACAGTTGCAAACTTAATTTTTAAAAATAAAAAACTAAATTATTATTAAAAAATCTTTCAAAATTAATGGTCATTTAAGAGGACTTAAATTGTATGAACAAACTTTATCTTTGACCGACAATAGTATAGTTTTTGGTTCCAAAGTGTAGAGTCATGACATTCTTTCTTTTGAGCCAACTAAAATTCTGTCAACGTTAGATTTTATTTAATAATCATTTTGTTTTTAAAAATTATGTTTTTTTTCACACAATTTATTAATCTTATGGTATTCAAATTTTCTTTTTAAACACAAAACAATTTTCTTTTTAAACACAAAACAAGTATTTAAAACTATCTTTTTAGTTTTGACTTTGGGCTTATATTTCCAAAATACTCCTGAAATGTGACAAACAAAGTATAAAAGTGAGTGGATAGAAATGGTAGTTAACAAACCGGTCTTAGTTTAAGCTCTACAGTTGTTAGTAGCACCTTCTCCACTGGTGCATACTTTGACTTTCTACTCCATTTTGCAGGAGAAACTTCAAATCAAAAAGGCACATGGAAGCTCAACCACAAACCTAGTCAACCTACCTGTGTATTGGGAGGTACTAATTCCATTGTACTTAATAATAGTAATAATGAAAGGAAAGAAGTTTACAGGAGGGAATACCAAGTATATGTTAATGCTATTTTCCACATTCGGAAGCCTAATCTTAGAGAATATATCTGAATGTATGTGTATATATGAATTTATAGGTTTTGAGAAATTCCATTTAACCAAAACACTTCACGTGTTTGTATGTGACACCTTGTCTGCCATTGTTTCATAAGGTAGACTGTAAACAGGAAAAAACTATTACAACAGAAAAATTAAAGAAACTCCCC

mRNA sequence

GTTATGCCTTGAGGATTTTACTCACGTCGCATTCCCAAGAACCAAGAAGAAAACAAGACAAGAACCACTCGAAATGGGTCTGAATGAAAATACAATCCCAACCCATTTTTTGTTTGTCTGCTTCCCCAACCCCTCCCCTCTCTGTTTCTTTAATCATAAAAATATTTTTTTGTTCCCATATCCCAATACCCCAGATTGTCGAACACTTAGCCGTATCAATTGAAACTGCCACACAGAGACAGCCAACAATGCCAACCCATTTCAGATGGAACTCTCGCGGTGGGCTTCACATGCCTCCCATTTCCATATCACTACTGGAGAAACTTCAAATCAAAAAGGCACATGGAAGCTCAACCACAAACCTAGTCAACCTACCTGTGTATTGGGAGGTACTAATTCCATTGTACTTAATAATAGTAATAATGAAAGGAAAGAAGTTTACAGGAGGGAATACCAAGTATATGTTAATGCTATTTTCCACATTCGGAAGCCTAATCTTAGAGAATATATCTGAATGTATGTGTATATATGAATTTATAGGTTTTGAGAAATTCCATTTAACCAAAACACTTCACGTGTTTGTATGTGACACCTTGTCTGCCATTGTTTCATAAGGTAGACTGTAAACAGGAAAAAACTATTACAACAGAAAAATTAAAGAAACTCCCC

Coding sequence (CDS)

ATGAAAATACAATCCCAACCCATTTTTTGTTTGTCTGCTTCCCCAACCCCTCCCCTCTCTGTTTCTTTAATCATAAAAATATTTTTTTGTTCCCATATCCCAATACCCCAGATTGTCGAACACTTAGCCGTATCAATTGAAACTGCCACACAGAGACAGCCAACAATGCCAACCCATTTCAGATGGAACTCTCGCGGTGGGCTTCACATGCCTCCCATTTCCATATCACTACTGGAGAAACTTCAAATCAAAAAGGCACATGGAAGCTCAACCACAAACCTAGTCAACCTACCTGTGTATTGGGAGGTACTAATTCCATTGTACTTAATAATAGTAATAATGAAAGGAAAGAAGTTTACAGGAGGGAATACCAAGTATATGTTAATGCTATTTTCCACATTCGGAAGCCTAATCTTAGAGAATATATCTGAATGTATGTGTATATATGAATTTATAGGTTTTGAGAAATTCCATTTAACCAAAACACTTCACGTGTTTGTATGTGACACCTTGTCTGCCATTGTTTCATAA

Protein sequence

MKIQSQPIFCLSASPTPPLSVSLIIKIFFCSHIPIPQIVEHLAVSIETATQRQPTMPTHFRWNSRGGLHMPPISISLLEKLQIKKAHGSSTTNLVNLPVYWEVLIPLYLIIVIMKGKKFTGGNTKYMLMLFSTFGSLILENISECMCIYEFIGFEKFHLTKTLHVFVCDTLSAIVS
Homology
[Close]
BLAST of MELO.jh010154.1.t1 vs. NCBI nr
Match: KAE8647328.1 (hypothetical protein Csa_003768 [Cucumis sativus])

HSP 1 Score: 126 bits (316), Expect = 3.05e-34
Identity = 63/72 (87.50%), Postives = 64/72 (88.89%), Query Frame = 0 

Query: 56  MPTHFRWNSRGGLHMPPISISLLEKLQIKKAHGSSTTNLVNLPVYWEVLIPLYLIIVIMK 115
           MPTHFRWNS  GLHMPPISISLLEKLQIKKAH SSTTNLVNL VYWEVLIPLYLI+  MK
Sbjct: 1   MPTHFRWNSHCGLHMPPISISLLEKLQIKKAHRSSTTNLVNLTVYWEVLIPLYLIVK-MK 60

Query: 116 GKKFTGGNTKYM 127
           GKKF GGNTK M
Sbjct: 61  GKKFVGGNTKDM 71

[Close]
BLAST of MELO.jh010154.1.t1 vs. ExPASy TrEMBL
Match: A0A0A0KGC8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G410640 PE=4 SV=1)

HSP 1 Score: 159 bits (402), Expect = 1.41e-46
Identity = 81/91 (89.01%), Postives = 83/91 (91.21%), Query Frame = 0 

Query: 37  QIVEHLAVSIETATQRQPTMPTHFRWNSRGGLHMPPISISLLEKLQIKKAHGSSTTNLVN 96
           +IVEHLAVSIETATQRQPTMPTHFRWNS  GLHMPPISISLLEKLQIKKAH SSTTNLVN
Sbjct: 59  EIVEHLAVSIETATQRQPTMPTHFRWNSHCGLHMPPISISLLEKLQIKKAHRSSTTNLVN 118

Query: 97  LPVYWEVLIPLYLIIVIMKGKKFTGGNTKYM 127
           L VYWEVLIPLYLI+  MKGKKF GGNTK M
Sbjct: 119 LTVYWEVLIPLYLIVK-MKGKKFVGGNTKDM 148

The following BLAST results are available for this feature:
BLAST of MELO.jh010154.1.t1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8647328.13.05e-3487.50hypothetical protein Csa_003768 [Cucumis sativus][more]
BLAST of MELO.jh010154.1.t1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh010154.1.t1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGC81.41e-4689.01Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G410640 PE=4 SV=1[more]
BLAST of MELO.jh010154.1.t1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO.jh010154.1MELO.jh010154.1gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO.jh010154.1.t1.exonMELO.jh010154.1.t1.exonexon
MELO.jh010154.1.t1.exonMELO.jh010154.1.t1.exon_2exon


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO.jh010154.1.t1.start_codonMELO.jh010154.1.t1.start_codonstart_codon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO.jh010154.1.t1.cdsMELO.jh010154.1.t1.cdsCDS
MELO.jh010154.1.t1.cdsMELO.jh010154.1.t1.cds_2CDS


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO.jh010154.1.t1.stop_codonMELO.jh010154.1.t1.stop_codonstop_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO.jh010154.1.t1MELO.jh010154.1.t1-proteinpolypeptide