MC11g1410.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g1410.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	MC11: 18634436 .. 18634624 (-)
Sequence length	189
RNA-Seq Expression	MC11g1410.1
Synteny	MC11g1410.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTAAAACATGTAATTTTTTTTTTTGTTGTGTGATGCATAGGGGCATAAATATTCATGATAGACTCCAAGCTAGACTACCTTCCATGTACTTAAGTCCAAGCCGTTGCACTATCTGCAATCAGAATAATGATTCTACGGATCATTATTTCTATATTATCCATACTCAACGTTCTTATGGATGCGTTTTT

mRNA sequence

CCTAAAACATGTAATTTTTTTTTTTGTTGTGTGATGCATAGGGGCATAAATATTCATGATAGACTCCAAGCTAGACTACCTTCCATGTACTTAAGTCCAAGCCGTTGCACTATCTGCAATCAGAATAATGATTCTACGGATCATTATTTCTATATTATCCATACTCAACGTTCTTATGGATGCGTTTTT

Coding sequence (CDS)

CCTAAAACATGTAATTTTTTTTTTTGTTGTGTGATGCATAGGGGCATAAATATTCATGATAGACTCCAAGCTAGACTACCTTCCATGTACTTAAGTCCAAGCCGTTGCACTATCTGCAATCAGAATAATGATTCTACGGATCATTATTTCTATATTATCCATACTCAACGTTCTTATGGATGCGTTTTT

Protein sequence

PKTCNFFFCCVMHRGINIHDRLQARLPSMYLSPSRCTICNQNNDSTDHYFYIIHTQRSYGCVF

Homology

[Close]

BLAST of MC11g1410.1 vs. NCBI nr
Match: TYK29578.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 1.71e-06
Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 1   PKTCNFFFCCVMHRGINIHDRLQARLPSMYLSPSRCTICNQNNDSTDHYF 50
           PK C FF   ++H  IN  DRLQ RLP+  LSP+ C +CN++ +  +H F
Sbjct: 285 PKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLF 334

[Close]

BLAST of MC11g1410.1 vs. NCBI nr
Match: KAA0044451.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 1.72e-06
Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 1   PKTCNFFFCCVMHRGINIHDRLQARLPSMYLSPSRCTICNQNNDSTDHYF 50
           PK C FF   ++H  IN  DRLQ RLP+  LSP+ C +CN++ +  +H F
Sbjct: 328 PKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLF 377

[Close]

BLAST of MC11g1410.1 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 1.74e-06
Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 1   PKTCNFFFCCVMHRGINIHDRLQARLPSMYLSPSRCTICNQNNDSTDHYF 50
           PK C FF   ++H  IN  DRLQ RLP+  LSP+ C +CN++ +  +H F
Sbjct: 783 PKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLF 832

[Close]

BLAST of MC11g1410.1 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 1.74e-06
Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 1   PKTCNFFFCCVMHRGINIHDRLQARLPSMYLSPSRCTICNQNNDSTDHYF 50
           PK C FF   ++H  IN  DRLQ RLP+  LSP+ C +CN++ +  +H F
Sbjct: 877 PKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLF 926

[Close]

BLAST of MC11g1410.1 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 1.74e-06
Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 1    PKTCNFFFCCVMHRGINIHDRLQARLPSMYLSPSRCTICNQNNDSTDHYF 50
            PK C FF   ++H  IN  DRLQ RLP+  LSP+ C +CN++ +  +H F
Sbjct: 985  PKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLF 1034

[Close]

BLAST of MC11g1410.1 vs. ExPASy TrEMBL
Match: A0A5D3E1E3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001840 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.29e-07
Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 1   PKTCNFFFCCVMHRGINIHDRLQARLPSMYLSPSRCTICNQNNDSTDHYF 50
           PK C FF   ++H  IN  DRLQ RLP+  LSP+ C +CN++ +  +H F
Sbjct: 285 PKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLF 334

[Close]

BLAST of MC11g1410.1 vs. ExPASy TrEMBL
Match: A0A5A7TSA7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001840 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.32e-07
Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 1   PKTCNFFFCCVMHRGINIHDRLQARLPSMYLSPSRCTICNQNNDSTDHYF 50
           PK C FF   ++H  IN  DRLQ RLP+  LSP+ C +CN++ +  +H F
Sbjct: 328 PKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLF 377

[Close]

BLAST of MC11g1410.1 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.42e-07
Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 1   PKTCNFFFCCVMHRGINIHDRLQARLPSMYLSPSRCTICNQNNDSTDHYF 50
           PK C FF   ++H  IN  DRLQ RLP+  LSP+ C +CN++ +  +H F
Sbjct: 783 PKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLF 832

[Close]

BLAST of MC11g1410.1 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.43e-07
Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 1   PKTCNFFFCCVMHRGINIHDRLQARLPSMYLSPSRCTICNQNNDSTDHYF 50
           PK C FF   ++H  IN  DRLQ RLP+  LSP+ C +CN++ +  +H F
Sbjct: 877 PKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLF 926

[Close]

BLAST of MC11g1410.1 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.45e-07
Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 1    PKTCNFFFCCVMHRGINIHDRLQARLPSMYLSPSRCTICNQNNDSTDHYF 50
            PK C FF   ++H  IN  DRLQ RLP+  LSP+ C +CN++ +  +H F
Sbjct: 985  PKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLF 1034

The following BLAST results are available for this feature:

BLAST of MC11g1410.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g1410.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK29578.1	1.71e-06	46.00	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0044451.1	1.72e-06	46.00	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0044556.1	1.74e-06	46.00	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0041397.1	1.74e-06	46.00	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0039950.1	1.74e-06	46.00	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245...	[more]

BLAST of MC11g1410.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E1E3	8.29e-07	46.00	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TSA7	8.32e-07	46.00	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TR15	8.42e-07	46.00	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TIB8	8.43e-07	46.00	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7T9I7	8.45e-07	46.00	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of MC11g1410.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 2..50 e-value: 3.7E-6 score: 27.6

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g1410	MC11g1410	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g1410.1-cds	MC11g1410.1-cds-MC11:18634436..18634624	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g1410.1	MC11g1410.1-protein	polypeptide