MC11g1316.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g1316.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Cupin_3 domain-containing protein
Location	MC11: 15982999 .. 15983518 (-)
Sequence length	276
RNA-Seq Expression	MC11g1316.1
Synteny	MC11g1316.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACTGAGTTGTTTGGAGTTCGGATCGAACGGAATGTTCCACAGGCCAAACTCAAGGAGCTACATGTTTACACATGGCCCAAGTATGTCCATTTTCTTTCGATTGTCACGACCTATTGGTTGGAATCTTAATCAGTTGACTTATATTCAATTATCTCCTTCCTACAAAAACATCGTCTATTATTTCGTTTCTGAATCTCTACTTTTAAATCTCCCTCTTCCTTTGGCCCCATTTGTTGTTTTTTTCTTTATTTAACCTCAAGAATGAAAATTGATGAGAATATTTAACGTGGGGTGTTGGTGATTGTTGTAATTACAAATAGGTGGAGTTGTGGTCCAAGCAAATTCGATTGGACATTCAGTGCGATGGAGACAGTGTATCAGCTAGAGGGTAAAGCAAAAATCAAGATCGAAGAGCACAATGAGACATTTGAAATTGGGGCTGGAGATATGGCTGTTTTTCCCCACTGGAATGAAGATTAATTTGGATGTCATAGAACCCATAGACAAGCATTAT

mRNA sequence

ATGGCCACTGAGTTGTTTGGAGTTCGGATCGAACGGAATGTTCCACAGGCCAAACTCAAGGAGCTACATGTTTACACATGGCCCAAGTGGAGTTGTGGTCCAAGCAAATTCGATTGGACATTCAGTGCGATGGAGACAGTGTATCAGCTAGAGGGTAAAGCAAAAATCAAGATCGAAGAGCACAATGAGACATTTGAAATTGGGGCTGGAGATATGGCTGTTTTTCCCGGAATGAAGATTAATTTGGATGTCATAGAACCCATAGACAAGCATTAT

Coding sequence (CDS)

ATGGCCACTGAGTTGTTTGGAGTTCGGATCGAACGGAATGTTCCACAGGCCAAACTCAAGGAGCTACATGTTTACACATGGCCCAAGTGGAGTTGTGGTCCAAGCAAATTCGATTGGACATTCAGTGCGATGGAGACAGTGTATCAGCTAGAGGGTAAAGCAAAAATCAAGATCGAAGAGCACAATGAGACATTTGAAATTGGGGCTGGAGATATGGCTGTTTTTCCCGGAATGAAGATTAATTTGGATGTCATAGAACCCATAGACAAGCATTAT

Protein sequence

MATELFGVRIERNVPQAKLKELHVYTWPKWSCGPSKFDWTFSAMETVYQLEGKAKIKIEEHNETFEIGAGDMAVFPGMKINLDVIEPIDKHY

Homology

[Close]

BLAST of MC11g1316.1 vs. NCBI nr
Match: XP_022156027.1 (uncharacterized protein LOC111022998 [Momordica charantia])

HSP 1 Score: 160 bits (404), Expect = 4.26e-49
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1  MATELFGVRIERNVPQAKLKELHVYTWPKWSCGPSKFDWTFSAMETVYQLEGKAKIKIEE 60
          MATELFGVRIERNVPQAKLKEL VYTWPKWSCGPSKFDWTFSAMETVYQLEGKAKIKIEE
Sbjct: 1  MATELFGVRIERNVPQAKLKELDVYTWPKWSCGPSKFDWTFSAMETVYQLEGKAKIKIEE 60

Query: 61 HNETFEIGAGDMAVFP 76
          HNETFEIGAGDMAVFP
Sbjct: 61 HNETFEIGAGDMAVFP 76

[Close]

BLAST of MC11g1316.1 vs. NCBI nr
Match: CAB4279449.1 (unnamed protein product [Prunus armeniaca] >CAB4309909.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 125 bits (313), Expect = 2.03e-34
Identity = 56/93 (60.22%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 1   MATELFGVRIERNVPQAKLKELHVYTWPKWSCGPSKFDWTFSAMETVYQLEGKAKIKIEE 60
           MAT  FGV++E+N  Q+KL EL V  WPKWSCGPSKF W+F+A ET+Y LEGK  ++++ 
Sbjct: 47  MATNAFGVKVEKNPAQSKLTELGVTAWPKWSCGPSKFPWSFTATETMYLLEGKVIVQVDG 106

Query: 61  HNETFEIGAGDMAVFP-GMKINLDVIEPIDKHY 92
           H  +F IGAGD+AVFP GMK+  DVIE ++KHY
Sbjct: 107 HEGSFTIGAGDLAVFPKGMKVTWDVIEAVNKHY 139

[Close]

BLAST of MC11g1316.1 vs. NCBI nr
Match: XP_008238399.1 (PREDICTED: uncharacterized protein LOC103337036 [Prunus mume])

HSP 1 Score: 125 bits (313), Expect = 2.03e-34
Identity = 56/93 (60.22%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 1   MATELFGVRIERNVPQAKLKELHVYTWPKWSCGPSKFDWTFSAMETVYQLEGKAKIKIEE 60
           MAT  FGV++E+N  Q+KL EL V  WPKWSCGPSKF W+F+A ET+Y LEGK  ++++ 
Sbjct: 47  MATNAFGVKVEKNPAQSKLTELGVTAWPKWSCGPSKFPWSFTATETMYLLEGKVIVQVDG 106

Query: 61  HNETFEIGAGDMAVFP-GMKINLDVIEPIDKHY 92
           H  +F IGAGD+AVFP GMK+  DVIE ++KHY
Sbjct: 107 HEGSFTIGAGDLAVFPKGMKVTWDVIEAVNKHY 139

[Close]

BLAST of MC11g1316.1 vs. NCBI nr
Match: VVA35174.1 (PREDICTED: DUF861 domain-containing [Prunus dulcis])

HSP 1 Score: 123 bits (309), Expect = 2.11e-34
Identity = 55/93 (59.14%), Postives = 71/93 (76.34%), Query Frame = 0


Query: 1  MATELFGVRIERNVPQAKLKELHVYTWPKWSCGPSKFDWTFSAMETVYQLEGKAKIKIEE 60
          MAT  FGV++E N  Q+KL EL V  WPKWSCGPSKF W+F+A ET+Y LEGK  ++++ 
Sbjct: 1  MATNAFGVKVENNPAQSKLTELGVTAWPKWSCGPSKFPWSFTATETMYLLEGKVIVQVDG 60

Query: 61 HNETFEIGAGDMAVFP-GMKINLDVIEPIDKHY 92
          H  +F IGAGD+AVFP GMK+  DV+E ++KHY
Sbjct: 61 HEGSFTIGAGDLAVFPKGMKVTWDVLEAVNKHY 93

[Close]

BLAST of MC11g1316.1 vs. NCBI nr
Match: KAF3951790.1 (hypothetical protein CMV_022594 [Castanea mollissima])

HSP 1 Score: 124 bits (312), Expect = 2.71e-34
Identity = 54/93 (58.06%), Postives = 74/93 (79.57%), Query Frame = 0


Query: 1   MATELFGVRIERNVPQAKLKELHVYTWPKWSCGPSKFDWTFSAMETVYQLEGKAKIKIEE 60
           MATE FGV+I++N P++KL EL V TWPKW CGPSKF W F+A ET++ L+GK K+ ++ 
Sbjct: 45  MATEKFGVKIQKNPPESKLTELGVRTWPKWGCGPSKFPWEFTATETMFLLDGKVKVYVDG 104

Query: 61  HNETFEIGAGDMAVFP-GMKINLDVIEPIDKHY 92
           ++E+FEIGAGD+ VFP GMK+  DV + ++KHY
Sbjct: 105 YDESFEIGAGDLVVFPKGMKVTWDVTKAVNKHY 137

[Close]

BLAST of MC11g1316.1 vs. ExPASy TrEMBL
Match: A0A6J1DQY7 (uncharacterized protein LOC111022998 OS=Momordica charantia OX=3673 GN=LOC111022998 PE=4 SV=1)

HSP 1 Score: 160 bits (404), Expect = 2.06e-49
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1  MATELFGVRIERNVPQAKLKELHVYTWPKWSCGPSKFDWTFSAMETVYQLEGKAKIKIEE 60
          MATELFGVRIERNVPQAKLKEL VYTWPKWSCGPSKFDWTFSAMETVYQLEGKAKIKIEE
Sbjct: 1  MATELFGVRIERNVPQAKLKELDVYTWPKWSCGPSKFDWTFSAMETVYQLEGKAKIKIEE 60

Query: 61 HNETFEIGAGDMAVFP 76
          HNETFEIGAGDMAVFP
Sbjct: 61 HNETFEIGAGDMAVFP 76

[Close]

BLAST of MC11g1316.1 vs. ExPASy TrEMBL
Match: A0A6J5USB1 (Cupin_3 domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS31714 PE=4 SV=1)

HSP 1 Score: 125 bits (313), Expect = 9.82e-35
Identity = 56/93 (60.22%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 1   MATELFGVRIERNVPQAKLKELHVYTWPKWSCGPSKFDWTFSAMETVYQLEGKAKIKIEE 60
           MAT  FGV++E+N  Q+KL EL V  WPKWSCGPSKF W+F+A ET+Y LEGK  ++++ 
Sbjct: 47  MATNAFGVKVEKNPAQSKLTELGVTAWPKWSCGPSKFPWSFTATETMYLLEGKVIVQVDG 106

Query: 61  HNETFEIGAGDMAVFP-GMKINLDVIEPIDKHY 92
           H  +F IGAGD+AVFP GMK+  DVIE ++KHY
Sbjct: 107 HEGSFTIGAGDLAVFPKGMKVTWDVIEAVNKHY 139

[Close]

BLAST of MC11g1316.1 vs. ExPASy TrEMBL
Match: A0A5E4G618 (PREDICTED: DUF861 domain-containing OS=Prunus dulcis OX=3755 GN=ALMOND_2B032801 PE=4 SV=1)

HSP 1 Score: 123 bits (309), Expect = 1.02e-34
Identity = 55/93 (59.14%), Postives = 71/93 (76.34%), Query Frame = 0


Query: 1  MATELFGVRIERNVPQAKLKELHVYTWPKWSCGPSKFDWTFSAMETVYQLEGKAKIKIEE 60
          MAT  FGV++E N  Q+KL EL V  WPKWSCGPSKF W+F+A ET+Y LEGK  ++++ 
Sbjct: 1  MATNAFGVKVENNPAQSKLTELGVTAWPKWSCGPSKFPWSFTATETMYLLEGKVIVQVDG 60

Query: 61 HNETFEIGAGDMAVFP-GMKINLDVIEPIDKHY 92
          H  +F IGAGD+AVFP GMK+  DV+E ++KHY
Sbjct: 61 HEGSFTIGAGDLAVFPKGMKVTWDVLEAVNKHY 93

[Close]

BLAST of MC11g1316.1 vs. ExPASy TrEMBL
Match: A0A6P5S959 (uncharacterized protein LOC110756390 OS=Prunus avium OX=42229 GN=LOC110756390 PE=4 SV=1)

HSP 1 Score: 124 bits (311), Expect = 1.98e-34
Identity = 56/93 (60.22%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 1   MATELFGVRIERNVPQAKLKELHVYTWPKWSCGPSKFDWTFSAMETVYQLEGKAKIKIEE 60
           MAT  FGV++E+N  Q+KL EL V TWPKWSCGPSKF W+F+A ET+Y LEGK  ++++ 
Sbjct: 47  MATNAFGVKVEKNPAQSKLTELGVTTWPKWSCGPSKFPWSFTATETMYLLEGKVIVQVDG 106

Query: 61  HNETFEIGAGDMAVFP-GMKINLDVIEPIDKHY 92
           H  +F IGAGD+AVFP  MK+  DVIE ++KHY
Sbjct: 107 HEGSFTIGAGDLAVFPKDMKVTWDVIEAVNKHY 139

[Close]

BLAST of MC11g1316.1 vs. ExPASy TrEMBL
Match: A0A2N9JA09 (Cupin_3 domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61316 PE=4 SV=1)

HSP 1 Score: 122 bits (307), Expect = 2.06e-34
Identity = 56/93 (60.22%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 1  MATELFGVRIERNVPQAKLKELHVYTWPKWSCGPSKFDWTFSAMETVYQLEGKAKIKIEE 60
          MATE FGV+IE N P++KL EL V TWPKW  GPSKF W F+A ET++ LEGK K+ ++ 
Sbjct: 1  MATERFGVKIESNPPESKLTELGVTTWPKWEGGPSKFPWEFTATETMFLLEGKVKVYVDG 60

Query: 61 HNETFEIGAGDMAVFP-GMKINLDVIEPIDKHY 92
          ++E+FEIGAGD+ VFP GMK+  DV E ++KHY
Sbjct: 61 YDESFEIGAGDLVVFPKGMKVTWDVTEAVNKHY 93

[Close]

BLAST of MC11g1316.1 vs. TAIR 10
Match: AT4G10300.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 104.0 bits (258), Expect = 6.6e-23
Identity = 48/92 (52.17%), Postives = 60/92 (65.22%), Query Frame = 0


Query: 2   ATELFGVRIERNVPQAKLKELHVYTWPKWSCGPSKFDWTFSAMETVYQLEGKAKIKIEEH 61
           +TE  G+ IE+N P++KL +L V +WPKW C PSKF WT+SA ET Y L+GK K+     
Sbjct: 40  STEKLGITIEKNPPESKLTQLGVRSWPKWGCPPSKFPWTYSAKETCYLLQGKVKVYPNGS 99

Query: 62  NETFEIGAGDMAVFP-GMKINLDVIEPIDKHY 93
           +E  EI AGD  VFP GM    DV   +DKHY
Sbjct: 100 DEGVEIEAGDFVVFPKGMSCTWDVSVAVDKHY 131

[Close]

BLAST of MC11g1316.1 vs. TAIR 10
Match: AT4G10280.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 94.7 bits (234), Expect = 4.0e-20
Identity = 44/94 (46.81%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 3   TELFGVRIERNVPQAKLKELHVYTWPKWSCGPSKFDWTFSAMETVYQLEGKAKIKI---E 62
           TE+ GV+I R     KL +L V +WPKW   PSKF W F   ET+Y +EGK K+ +   +
Sbjct: 43  TEIHGVKILRQASDTKLAQLGVASWPKWEGAPSKFPWEFKKTETIYFMEGKVKVNVDGYD 102

Query: 63  EHNETFEIGAGDMAVFP-GMKINLDVIEPIDKHY 93
           E  ETFEIG GD+ VFP  MK+  ++ E + K Y
Sbjct: 103 EEEETFEIGKGDVVVFPKDMKVVWEITEAVKKQY 136

[Close]

BLAST of MC11g1316.1 vs. TAIR 10
Match: AT4G10290.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 89.4 bits (220), Expect = 1.7e-18
Identity = 43/94 (45.74%), Postives = 57/94 (60.64%), Query Frame = 0


Query: 3   TELFGVRIERNVPQAKLKELHVYTWPKWSCGPSKFDWTFSAMETVYQLEGKAKIKIEEHN 62
           TE+ GV++ R    AKL EL V +W  W   P KF W F   ET+Y +EGK K+K+E+H+
Sbjct: 15  TEIHGVKVMRQTSDAKLAELGVTSWQLWESMPRKFPWKFKKTETMYFVEGKLKVKVEDHH 74

Query: 63  ---ETFEIGAGDMAVFP-GMKINLDVIEPIDKHY 93
              E  E  AGD+ VFP  M + +DVIE + K Y
Sbjct: 75  KEGEALEFVAGDLVVFPQDMNVFVDVIEDVKKRY 108

[Close]

BLAST of MC11g1316.1 vs. TAIR 10
Match: AT3G04300.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 75.5 bits (184), Expect = 2.5e-14
Identity = 36/84 (42.86%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 10 IERNVPQAKLKELHVYTWPKWSCGPSKFDWTFSAMETVYQLEGKAKIKIEEHNETFEIGA 69
          IE N    +L +L V +WPKWSC P K+   F   ET Y ++GK K+  +  +E  E GA
Sbjct: 5  IENNPSSRRLSDLGVMSWPKWSCQPGKYALVFEERETCYLVKGKVKVYPKGSSEFVEFGA 64

Query: 70 GDMAVFP-GMKINLDVIEPIDKHY 93
          GD+   P G+    DV   IDKHY
Sbjct: 65 GDLVTIPKGLSCTWDVSLFIDKHY 88

[Close]

BLAST of MC11g1316.1 vs. TAIR 10
Match: AT4G28703.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 8.1e-13
Identity = 38/102 (37.25%), Postives = 50/102 (49.02%), Query Frame = 0


Query: 1   MATELFGVRIERNVPQAKLKELHVYTWPKWSCGPSKFDWTFSAMETVYQLEGKAKI---- 60
           MA +   + +E+N  QA+L EL   +WPKW C P K+   + A E  Y L GK K+    
Sbjct: 1   MADQNPRIIVEQNPSQARLDELKFKSWPKWGCSPGKYHLKYEAEEICYILRGKVKVYPKP 60

Query: 61  -----KIEEHNETFEIGAGDMAVFP-GMKINLDVIEPIDKHY 93
                   E     E GAGD+  FP G+    DV   +DKHY
Sbjct: 61  PPSSSSDAEVEWCVEFGAGDIVTFPKGLSCTWDVSLSVDKHY 102

The following BLAST results are available for this feature:

BLAST of MC11g1316.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g1316.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156027.1	4.26e-49	98.68	uncharacterized protein LOC111022998 [Momordica charantia]	[more]
CAB4279449.1	2.03e-34	60.22	unnamed protein product [Prunus armeniaca] >CAB4309909.1 unnamed protein product...	[more]
XP_008238399.1	2.03e-34	60.22	PREDICTED: uncharacterized protein LOC103337036 [Prunus mume]	[more]
VVA35174.1	2.11e-34	59.14	PREDICTED: DUF861 domain-containing [Prunus dulcis]	[more]
KAF3951790.1	2.71e-34	58.06	hypothetical protein CMV_022594 [Castanea mollissima]	[more]

BLAST of MC11g1316.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DQY7	2.06e-49	98.68	uncharacterized protein LOC111022998 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J5USB1	9.82e-35	60.22	Cupin_3 domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS31...	[more]
A0A5E4G618	1.02e-34	59.14	PREDICTED: DUF861 domain-containing OS=Prunus dulcis OX=3755 GN=ALMOND_2B032801 ...	[more]
A0A6P5S959	1.98e-34	60.22	uncharacterized protein LOC110756390 OS=Prunus avium OX=42229 GN=LOC110756390 PE...	[more]
A0A2N9JA09	2.06e-34	60.22	Cupin_3 domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61316 ...	[more]

BLAST of MC11g1316.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10300.1	6.6e-23	52.17	RmlC-like cupins superfamily protein	[more]
AT4G10280.1	4.0e-20	46.81	RmlC-like cupins superfamily protein	[more]
AT4G10290.1	1.7e-18	45.74	RmlC-like cupins superfamily protein	[more]
AT3G04300.1	2.5e-14	42.86	RmlC-like cupins superfamily protein	[more]
AT4G28703.1	8.1e-13	37.25	RmlC-like cupins superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008579	(S)-ureidoglycine aminohydrolase, cupin-3 domain	PFAM	PF05899	Cupin_3	coord: 20..92 e-value: 2.4E-18 score: 65.6
IPR014710	RmlC-like jelly roll fold	GENE3D	2.60.120.10	Jelly Rolls	coord: 1..92 e-value: 4.7E-26 score: 92.3
None	No IPR available	PANTHER	PTHR33271	OS04G0445200 PROTEIN	coord: 1..92
None	No IPR available	PANTHER	PTHR33271:SF1	RMLC-LIKE JELLY ROLL PROTEIN-RELATED	coord: 1..92
None	No IPR available	CDD	cd02227	cupin_TM1112-like	coord: 26..92 e-value: 3.40173E-22 score: 79.932
IPR011051	RmlC-like cupin domain superfamily	SUPERFAMILY	51182	RmlC-like cupins	coord: 13..77

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g1316	MC11g1316	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g1316.1-cds	MC11g1316.1-cds-MC11:15982999..15983046	CDS
MC11g1316.1-cds	MC11g1316.1-cds-MC11:15983051..15983192	CDS
MC11g1316.1-cds	MC11g1316.1-cds-MC11:15983433..15983518	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g1316.1	MC11g1316.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane