MC11g1294.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g1294.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC11: 15265582 .. 15265857 (-)
Sequence length	276
RNA-Seq Expression	MC11g1294.1
Synteny	MC11g1294.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGCAAATCAAAGGCAAAAAAAGGCTCACTCTTCTTTCTCAATCTTCAGCTTCTTCAAATCCAAAAAGGCTAGAAAAGGCGGAGATCTTTACAACCACGGTGGCACCTGGGGTGAGGCGTCGAGTTCGAATAAGGTGTGGCCGAGCGATGAAGATAAGGCTCACCACTGGGTTGCTGAGCCTGGTATCGATAGAAAGGCCAAAGATTATATCGATAGAATCTATCGAAACCGTACTTTAGAAACTGAGCGACAAACCGTAACAATTCATCCT

mRNA sequence

ATGGGAGCAAATCAAAGGCAAAAAAAGGCTCACTCTTCTTTCTCAATCTTCAGCTTCTTCAAATCCAAAAAGGCTAGAAAAGGCGGAGATCTTTACAACCACGGTGGCACCTGGGGTGAGGCGTCGAGTTCGAATAAGGTGTGGCCGAGCGATGAAGATAAGGCTCACCACTGGGTTGCTGAGCCTGGTATCGATAGAAAGGCCAAAGATTATATCGATAGAATCTATCGAAACCGTACTTTAGAAACTGAGCGACAAACCGTAACAATTCATCCT

Coding sequence (CDS)

ATGGGAGCAAATCAAAGGCAAAAAAAGGCTCACTCTTCTTTCTCAATCTTCAGCTTCTTCAAATCCAAAAAGGCTAGAAAAGGCGGAGATCTTTACAACCACGGTGGCACCTGGGGTGAGGCGTCGAGTTCGAATAAGGTGTGGCCGAGCGATGAAGATAAGGCTCACCACTGGGTTGCTGAGCCTGGTATCGATAGAAAGGCCAAAGATTATATCGATAGAATCTATCGAAACCGTACTTTAGAAACTGAGCGACAAACCGTAACAATTCATCCT

Protein sequence

MGANQRQKKAHSSFSIFSFFKSKKARKGGDLYNHGGTWGEASSSNKVWPSDEDKAHHWVAEPGIDRKAKDYIDRIYRNRTLETERQTVTIHP

Homology

[Close]

BLAST of MC11g1294.1 vs. NCBI nr
Match: KGN45873.1 (hypothetical protein Csa_005148 [Cucumis sativus])

HSP 1 Score: 149 bits (375), Expect = 1.89e-44
Identity = 70/92 (76.09%), Postives = 77/92 (83.70%), Query Frame = 0


Query: 1  MGANQRQKKAHSSFSIFSFFKSKKARKGGDLYNHGGTWGEASSSNKVWPSDEDKAHHWVA 60
          MG + RQKK HSSFSIFSFFKSK+ RKG D+Y HG  W +  SS+KVWPSDEDK + WVA
Sbjct: 1  MGGSHRQKKTHSSFSIFSFFKSKRGRKG-DVYEHGTNWEDVPSSSKVWPSDEDKGYRWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRTLETERQTVTIHP 92
          EPGIDRKAKDYIDRIY+NR  ETERQTVTIHP
Sbjct: 61 EPGIDRKAKDYIDRIYKNRVFETERQTVTIHP 91

[Close]

BLAST of MC11g1294.1 vs. NCBI nr
Match: KGN45870.1 (hypothetical protein Csa_004960 [Cucumis sativus])

HSP 1 Score: 147 bits (372), Expect = 5.41e-44
Identity = 74/93 (79.57%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 1  MGANQRQKKAHSSFSIFSFFKSKKARKGGDLYNHGGTW-GEASSSNKVWPSDEDKAHHWV 60
          MG N RQKK+HSSFSIFSFFKSK+ RKG D Y+HGG W  E   SNKVWPSDEDKAHHW+
Sbjct: 1  MGGN-RQKKSHSSFSIFSFFKSKRGRKG-DHYDHGGAWPDEMPRSNKVWPSDEDKAHHWI 60

Query: 61 AEPGIDRKAKDYIDRIYRNRTLETERQTVTIHP 92
          AEPGIDRKAKDYIDRIYRNR  E+ERQTVTI P
Sbjct: 61 AEPGIDRKAKDYIDRIYRNRVFESERQTVTISP 91

[Close]

BLAST of MC11g1294.1 vs. NCBI nr
Match: KAA0035003.1 (hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343.1 hypothetical protein E5676_scaffold155G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 141 bits (356), Expect = 1.53e-41
Identity = 67/92 (72.83%), Postives = 74/92 (80.43%), Query Frame = 0


Query: 1  MGANQRQKKAHSSFSIFSFFKSKKARKGGDLYNHGGTWGEASSSNKVWPSDEDKAHHWVA 60
          MG N RQKK+HSSFSIFSFFKS++ RKG +  + G    E   S KVWPSDEDKAHHWVA
Sbjct: 1  MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRTLETERQTVTIHP 92
          EPGIDRKAKDYIDRIYRNR  E+ERQT+TI P
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTITISP 92

[Close]

BLAST of MC11g1294.1 vs. NCBI nr
Match: KGN45869.1 (hypothetical protein Csa_005516 [Cucumis sativus])

HSP 1 Score: 141 bits (355), Expect = 2.18e-41
Identity = 68/92 (73.91%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 1  MGANQRQKKAHSSFSIFSFFKSKKARKGGDLYNHGGTWGEASSSNKVWPSDEDKAHHWVA 60
          MG N RQKKAH+SFSIFSFFKS++ RKG    + G    E   S KVWPSDEDKAHHWVA
Sbjct: 1  MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRTLETERQTVTIHP 92
          EPGIDRKAKDYIDRIYRNR  E+ERQTVTI P
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISP 92

[Close]

BLAST of MC11g1294.1 vs. NCBI nr
Match: KAG6592313.1 (hypothetical protein SDJN03_14659, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137 bits (344), Expect = 1.00e-39
Identity = 65/90 (72.22%), Postives = 72/90 (80.00%), Query Frame = 0


Query: 1  MGANQRQKKAHSSFSIFSFFKSKKARKGGDLYNHGGTWGEASSSNKVWPSDEDKAHHWVA 60
          MG N R KK+HSSFSIF+FFK +K RK  D Y+HGG W E   S KVWPSDEDK H WVA
Sbjct: 1  MGGNNRSKKSHSSFSIFNFFKFRKGRKE-DHYDHGGYWNEMPRSGKVWPSDEDKTHRWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRTLETERQTVTI 90
          EPGIDRKAKDYID+IYRNR  E+ERQTVT+
Sbjct: 61 EPGIDRKAKDYIDKIYRNRIFESERQTVTL 89

[Close]

BLAST of MC11g1294.1 vs. ExPASy TrEMBL
Match: A0A0A0K8W0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 149 bits (375), Expect = 9.13e-45
Identity = 70/92 (76.09%), Postives = 77/92 (83.70%), Query Frame = 0


Query: 1  MGANQRQKKAHSSFSIFSFFKSKKARKGGDLYNHGGTWGEASSSNKVWPSDEDKAHHWVA 60
          MG + RQKK HSSFSIFSFFKSK+ RKG D+Y HG  W +  SS+KVWPSDEDK + WVA
Sbjct: 1  MGGSHRQKKTHSSFSIFSFFKSKRGRKG-DVYEHGTNWEDVPSSSKVWPSDEDKGYRWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRTLETERQTVTIHP 92
          EPGIDRKAKDYIDRIY+NR  ETERQTVTIHP
Sbjct: 61 EPGIDRKAKDYIDRIYKNRVFETERQTVTIHP 91

[Close]

BLAST of MC11g1294.1 vs. ExPASy TrEMBL
Match: A0A0A0K7Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 147 bits (372), Expect = 2.62e-44
Identity = 74/93 (79.57%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 1  MGANQRQKKAHSSFSIFSFFKSKKARKGGDLYNHGGTW-GEASSSNKVWPSDEDKAHHWV 60
          MG N RQKK+HSSFSIFSFFKSK+ RKG D Y+HGG W  E   SNKVWPSDEDKAHHW+
Sbjct: 1  MGGN-RQKKSHSSFSIFSFFKSKRGRKG-DHYDHGGAWPDEMPRSNKVWPSDEDKAHHWI 60

Query: 61 AEPGIDRKAKDYIDRIYRNRTLETERQTVTIHP 92
          AEPGIDRKAKDYIDRIYRNR  E+ERQTVTI P
Sbjct: 61 AEPGIDRKAKDYIDRIYRNRVFESERQTVTISP 91

[Close]

BLAST of MC11g1294.1 vs. ExPASy TrEMBL
Match: A0A0A0KBW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 147 bits (370), Expect = 5.29e-44
Identity = 74/93 (79.57%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 1  MGANQRQKKAHSSFSIFSFFKSKKARKGGDLYNHGGTW-GEASSSNKVWPSDEDKAHHWV 60
          MG N RQKK+HSSFSIFSFFKS++ RKG D Y+HGG W  E   SNKVWPSDEDKAHHWV
Sbjct: 1  MGGN-RQKKSHSSFSIFSFFKSRRGRKG-DHYDHGGAWLDEMPRSNKVWPSDEDKAHHWV 60

Query: 61 AEPGIDRKAKDYIDRIYRNRTLETERQTVTIHP 92
          AEPGIDRKAKDYIDRIYRNR  E+ERQTVTI P
Sbjct: 61 AEPGIDRKAKDYIDRIYRNRVFESERQTVTISP 91

[Close]

BLAST of MC11g1294.1 vs. ExPASy TrEMBL
Match: A0A5A7SWT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00350 PE=4 SV=1)

HSP 1 Score: 141 bits (356), Expect = 7.43e-42
Identity = 67/92 (72.83%), Postives = 74/92 (80.43%), Query Frame = 0


Query: 1  MGANQRQKKAHSSFSIFSFFKSKKARKGGDLYNHGGTWGEASSSNKVWPSDEDKAHHWVA 60
          MG N RQKK+HSSFSIFSFFKS++ RKG +  + G    E   S KVWPSDEDKAHHWVA
Sbjct: 1  MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRTLETERQTVTIHP 92
          EPGIDRKAKDYIDRIYRNR  E+ERQT+TI P
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTITISP 92

[Close]

BLAST of MC11g1294.1 vs. ExPASy TrEMBL
Match: A0A0A0KAK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 141 bits (355), Expect = 1.05e-41
Identity = 68/92 (73.91%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 1  MGANQRQKKAHSSFSIFSFFKSKKARKGGDLYNHGGTWGEASSSNKVWPSDEDKAHHWVA 60
          MG N RQKKAH+SFSIFSFFKS++ RKG    + G    E   S KVWPSDEDKAHHWVA
Sbjct: 1  MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRTLETERQTVTIHP 92
          EPGIDRKAKDYIDRIYRNR  E+ERQTVTI P
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISP 92

[Close]

BLAST of MC11g1294.1 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 65.1 bits (157), Expect = 3.4e-11
Identity = 36/85 (42.35%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 7  QKKAHSS--FSIFSFFKSKKARKGGDLYNHGGTWGEASSSNKVWPSDEDKAHHWVAEPGI 66
          + ++HSS  FS+FSFFK++++ +        G+W +   + K   SDEDK  +WVAEPGI
Sbjct: 4  KNRSHSSKRFSLFSFFKTRRSHR----VEADGSWDDFGYTRKAMASDEDK-RYWVAEPGI 63

Query: 67 DRKAKDYIDRIYRNRTLETERQTVT 90
          DRKA  +I + +  R  E+ERQT++
Sbjct: 64 DRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of MC11g1294.1 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-08
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 0


Query: 37 TWGEASSSNKVWPSDEDKAHHWVAEPGIDRKAKDYIDRIYRNRTLETERQTV 89
          +W +   + K W SDEDK  +WVAEPGIDRKA  +I + + +R  E+ERQT+
Sbjct: 16 SWDDVIYTRKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSESERQTL 66

The following BLAST results are available for this feature:

BLAST of MC11g1294.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g1294.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45873.1	1.89e-44	76.09	hypothetical protein Csa_005148 [Cucumis sativus]	[more]
KGN45870.1	5.41e-44	79.57	hypothetical protein Csa_004960 [Cucumis sativus]	[more]
KAA0035003.1	1.53e-41	72.83	hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343...	[more]
KGN45869.1	2.18e-41	73.91	hypothetical protein Csa_005516 [Cucumis sativus]	[more]
KAG6592313.1	1.00e-39	72.22	hypothetical protein SDJN03_14659, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MC11g1294.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8W0	9.13e-45	76.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1	[more]
A0A0A0K7Y2	2.62e-44	79.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1	[more]
A0A0A0KBW1	5.29e-44	79.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1	[more]
A0A5A7SWT9	7.43e-42	72.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KAK6	1.05e-41	73.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1	[more]

BLAST of MC11g1294.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05858.1	3.4e-11	42.35	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G26620.1	1.2e-08	50.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511	OS06G0632400 PROTEIN	coord: 1..89
None	No IPR available	PANTHER	PTHR33511:SF17	RIBOSOMAL PROTEIN S12	coord: 1..89

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g1294	MC11g1294	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g1294.1-cds	MC11g1294.1-cds-MC11:15265582..15265857	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g1294.1	MC11g1294.1-protein	polypeptide