MC11g1292.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC11g1292.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC11: 15244497 .. 15244772 (+)
Sequence length	276
RNA-Seq Expression	MC11g1292.1
Synteny	MC11g1292.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGAAACAGCGGTGAGAAAAAGGCTCGCTCTTCGTTCTCGATCTTCGGGTTTTTCAAATCCAAAAGAGGTAGAAAGGGAGATCTTTATAACCATTGTGGCACTTGGGATGAGACGTCGAGCGTGGGCAAAGTGTGGCCGAGCGATGAGGACAAAGCTCACCATTGGGTTGCTGAGCTTGGTATTGATAGAAAGGCGAAAGATTACATCGATAGGATCTATCGTAGTCGTGTCTTGGAAACCGAGCGTGAAACTATGATTGTTCGTCCATCT

mRNA sequence

ATGGGAAGAAACAGCGGTGAGAAAAAGGCTCGCTCTTCGTTCTCGATCTTCGGGTTTTTCAAATCCAAAAGAGGTAGAAAGGGAGATCTTTATAACCATTGTGGCACTTGGGATGAGACGTCGAGCGTGGGCAAAGTGTGGCCGAGCGATGAGGACAAAGCTCACCATTGGGTTGCTGAGCTTGGTATTGATAGAAAGGCGAAAGATTACATCGATAGGATCTATCGTAGTCGTGTCTTGGAAACCGAGCGTGAAACTATGATTGTTCGTCCATCT

Coding sequence (CDS)

ATGGGAAGAAACAGCGGTGAGAAAAAGGCTCGCTCTTCGTTCTCGATCTTCGGGTTTTTCAAATCCAAAAGAGGTAGAAAGGGAGATCTTTATAACCATTGTGGCACTTGGGATGAGACGTCGAGCGTGGGCAAAGTGTGGCCGAGCGATGAGGACAAAGCTCACCATTGGGTTGCTGAGCTTGGTATTGATAGAAAGGCGAAAGATTACATCGATAGGATCTATCGTAGTCGTGTCTTGGAAACCGAGCGTGAAACTATGATTGTTCGTCCATCT

Protein sequence

MGRNSGEKKARSSFSIFGFFKSKRGRKGDLYNHCGTWDETSSVGKVWPSDEDKAHHWVAELGIDRKAKDYIDRIYRSRVLETERETMIVRPS

Homology

[Close]

BLAST of MC11g1292.1 vs. NCBI nr
Match: KAA0035003.1 (hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343.1 hypothetical protein E5676_scaffold155G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 133 bits (335), Expect = 2.44e-38
Identity = 65/93 (69.89%), Postives = 76/93 (81.72%), Query Frame = 0


Query: 1  MGRNSGEKKARSSFSIFGFFKSKRGRKGDLYNHCGTW-DETSSVGKVWPSDEDKAHHWVA 60
          MG N+ +KK+ SSFSIF FFKS+RGRKGD  NH G+  DE    GKVWPSDEDKAHHWVA
Sbjct: 1  MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 ELGIDRKAKDYIDRIYRSRVLETERETMIVRPS 92
          E GIDRKAKDYIDRIYR+RV E+ER+T+ + P+
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTITISPN 93

[Close]

BLAST of MC11g1292.1 vs. NCBI nr
Match: KGN45869.1 (hypothetical protein Csa_005516 [Cucumis sativus])

HSP 1 Score: 133 bits (335), Expect = 2.44e-38
Identity = 65/93 (69.89%), Postives = 76/93 (81.72%), Query Frame = 0


Query: 1  MGRNSGEKKARSSFSIFGFFKSKRGRKGDLYNHCGTW-DETSSVGKVWPSDEDKAHHWVA 60
          MG N+ +KKA +SFSIF FFKS+RGRKGD  NH G+  DE    GKVWPSDEDKAHHWVA
Sbjct: 1  MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 ELGIDRKAKDYIDRIYRSRVLETERETMIVRPS 92
          E GIDRKAKDYIDRIYR+RV E+ER+T+ + P+
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISPN 93

[Close]

BLAST of MC11g1292.1 vs. NCBI nr
Match: KGN45870.1 (hypothetical protein Csa_004960 [Cucumis sativus])

HSP 1 Score: 133 bits (334), Expect = 3.36e-38
Identity = 65/93 (69.89%), Postives = 75/93 (80.65%), Query Frame = 0


Query: 1  MGRNSGEKKARSSFSIFGFFKSKRGRKGDLYNHCGTW-DETSSVGKVWPSDEDKAHHWVA 60
          MG N  +KK+ SSFSIF FFKSKRGRKGD Y+H G W DE     KVWPSDEDKAHHW+A
Sbjct: 1  MGGNR-QKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIA 60

Query: 61 ELGIDRKAKDYIDRIYRSRVLETERETMIVRPS 92
          E GIDRKAKDYIDRIYR+RV E+ER+T+ + P+
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISPN 92

[Close]

BLAST of MC11g1292.1 vs. NCBI nr
Match: KGN45873.1 (hypothetical protein Csa_005148 [Cucumis sativus])

HSP 1 Score: 130 bits (328), Expect = 2.76e-37
Identity = 60/92 (65.22%), Postives = 72/92 (78.26%), Query Frame = 0


Query: 1  MGRNSGEKKARSSFSIFGFFKSKRGRKGDLYNHCGTWDETSSVGKVWPSDEDKAHHWVAE 60
          MG +  +KK  SSFSIF FFKSKRGRKGD+Y H   W++  S  KVWPSDEDK + WVAE
Sbjct: 1  MGGSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNWEDVPSSSKVWPSDEDKGYRWVAE 60

Query: 61 LGIDRKAKDYIDRIYRSRVLETERETMIVRPS 92
           GIDRKAKDYIDRIY++RV ETER+T+ + P+
Sbjct: 61 PGIDRKAKDYIDRIYKNRVFETERQTVTIHPN 92

[Close]

BLAST of MC11g1292.1 vs. NCBI nr
Match: KAG6592315.1 (hypothetical protein SDJN03_14661, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129 bits (325), Expect = 7.91e-37
Identity = 62/87 (71.26%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 1  MGRNSGEKKARSSFSIFGFFKSKRGRKGDLYNHCGTWDETSSVGKVWPSDEDKAHHWVAE 60
          MGRN+  KKA SSFSIF FFK +RGRK D  +H   WDE     KVWPSDEDK HHWVAE
Sbjct: 1  MGRNNRSKKAHSSFSIFNFFKFRRGRKEDHSDHSDCWDEMPRSSKVWPSDEDKMHHWVAE 60

Query: 61 LGIDRKAKDYIDRIYRSRVLETERETM 87
           GIDRKAKDYIDRIYR+RVLE+ER+T+
Sbjct: 61 PGIDRKAKDYIDRIYRNRVLESERQTV 87

[Close]

BLAST of MC11g1292.1 vs. ExPASy TrEMBL
Match: A0A5A7SWT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00350 PE=4 SV=1)

HSP 1 Score: 133 bits (335), Expect = 1.18e-38
Identity = 65/93 (69.89%), Postives = 76/93 (81.72%), Query Frame = 0


Query: 1  MGRNSGEKKARSSFSIFGFFKSKRGRKGDLYNHCGTW-DETSSVGKVWPSDEDKAHHWVA 60
          MG N+ +KK+ SSFSIF FFKS+RGRKGD  NH G+  DE    GKVWPSDEDKAHHWVA
Sbjct: 1  MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 ELGIDRKAKDYIDRIYRSRVLETERETMIVRPS 92
          E GIDRKAKDYIDRIYR+RV E+ER+T+ + P+
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTITISPN 93

[Close]

BLAST of MC11g1292.1 vs. ExPASy TrEMBL
Match: A0A0A0KAK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 133 bits (335), Expect = 1.18e-38
Identity = 65/93 (69.89%), Postives = 76/93 (81.72%), Query Frame = 0


Query: 1  MGRNSGEKKARSSFSIFGFFKSKRGRKGDLYNHCGTW-DETSSVGKVWPSDEDKAHHWVA 60
          MG N+ +KKA +SFSIF FFKS+RGRKGD  NH G+  DE    GKVWPSDEDKAHHWVA
Sbjct: 1  MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 ELGIDRKAKDYIDRIYRSRVLETERETMIVRPS 92
          E GIDRKAKDYIDRIYR+RV E+ER+T+ + P+
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISPN 93

[Close]

BLAST of MC11g1292.1 vs. ExPASy TrEMBL
Match: A0A0A0K7Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 133 bits (334), Expect = 1.63e-38
Identity = 65/93 (69.89%), Postives = 75/93 (80.65%), Query Frame = 0


Query: 1  MGRNSGEKKARSSFSIFGFFKSKRGRKGDLYNHCGTW-DETSSVGKVWPSDEDKAHHWVA 60
          MG N  +KK+ SSFSIF FFKSKRGRKGD Y+H G W DE     KVWPSDEDKAHHW+A
Sbjct: 1  MGGNR-QKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIA 60

Query: 61 ELGIDRKAKDYIDRIYRSRVLETERETMIVRPS 92
          E GIDRKAKDYIDRIYR+RV E+ER+T+ + P+
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISPN 92

[Close]

BLAST of MC11g1292.1 vs. ExPASy TrEMBL
Match: A0A0A0KBW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 132 bits (332), Expect = 3.28e-38
Identity = 65/93 (69.89%), Postives = 75/93 (80.65%), Query Frame = 0


Query: 1  MGRNSGEKKARSSFSIFGFFKSKRGRKGDLYNHCGTW-DETSSVGKVWPSDEDKAHHWVA 60
          MG N  +KK+ SSFSIF FFKS+RGRKGD Y+H G W DE     KVWPSDEDKAHHWVA
Sbjct: 1  MGGNR-QKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVA 60

Query: 61 ELGIDRKAKDYIDRIYRSRVLETERETMIVRPS 92
          E GIDRKAKDYIDRIYR+RV E+ER+T+ + P+
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISPN 92

[Close]

BLAST of MC11g1292.1 vs. ExPASy TrEMBL
Match: A0A0A0K8W0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 130 bits (328), Expect = 1.34e-37
Identity = 60/92 (65.22%), Postives = 72/92 (78.26%), Query Frame = 0


Query: 1  MGRNSGEKKARSSFSIFGFFKSKRGRKGDLYNHCGTWDETSSVGKVWPSDEDKAHHWVAE 60
          MG +  +KK  SSFSIF FFKSKRGRKGD+Y H   W++  S  KVWPSDEDK + WVAE
Sbjct: 1  MGGSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNWEDVPSSSKVWPSDEDKGYRWVAE 60

Query: 61 LGIDRKAKDYIDRIYRSRVLETERETMIVRPS 92
           GIDRKAKDYIDRIY++RV ETER+T+ + P+
Sbjct: 61 PGIDRKAKDYIDRIYKNRVFETERQTVTIHPN 92

[Close]

BLAST of MC11g1292.1 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 64.3 bits (155), Expect = 5.8e-11
Identity = 36/84 (42.86%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 6  GEKKARSS--FSIFGFFKSKRGRKGDLYNHCGTWDETSSVGKVWPSDEDKAHHWVAELGI 65
          G+ ++ SS  FS+F FFK++R  + +     G+WD+     K   SDEDK  +WVAE GI
Sbjct: 3  GKNRSHSSKRFSLFSFFKTRRSHRVEA---DGSWDDFGYTRKAMASDEDK-RYWVAEPGI 62

Query: 66 DRKAKDYIDRIYRSRVLETERETM 88
          DRKA  +I + + +RV E+ER+T+
Sbjct: 63 DRKASAFIAKFHATRVSESERQTL 82

[Close]

BLAST of MC11g1292.1 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.4 bits (137), Expect = 7.1e-09
Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = 0


Query: 36 TWDETSSVGKVWPSDEDKAHHWVAELGIDRKAKDYIDRIYRSRVLETERETM 88
          +WD+     K W SDEDK  +WVAE GIDRKA  +I + + SRV E+ER+T+
Sbjct: 16 SWDDVIYTRKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSESERQTL 66

The following BLAST results are available for this feature:

BLAST of MC11g1292.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g1292.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035003.1	2.44e-38	69.89	hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343...	[more]
KGN45869.1	2.44e-38	69.89	hypothetical protein Csa_005516 [Cucumis sativus]	[more]
KGN45870.1	3.36e-38	69.89	hypothetical protein Csa_004960 [Cucumis sativus]	[more]
KGN45873.1	2.76e-37	65.22	hypothetical protein Csa_005148 [Cucumis sativus]	[more]
KAG6592315.1	7.91e-37	71.26	hypothetical protein SDJN03_14661, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MC11g1292.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SWT9	1.18e-38	69.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KAK6	1.18e-38	69.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1	[more]
A0A0A0K7Y2	1.63e-38	69.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1	[more]
A0A0A0KBW1	3.28e-38	69.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1	[more]
A0A0A0K8W0	1.34e-37	65.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1	[more]

BLAST of MC11g1292.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05858.1	5.8e-11	42.86	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G26620.1	7.1e-09	51.92	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511	OS06G0632400 PROTEIN	coord: 1..87
None	No IPR available	PANTHER	PTHR33511:SF17	RIBOSOMAL PROTEIN S12	coord: 1..87

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC11g1292	MC11g1292	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC11g1292.1-cds	MC11g1292.1-cds-MC11:15244497..15244772	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC11g1292.1	MC11g1292.1-protein	polypeptide