MC11g1121.1 (mRNA) Bitter gourd (Dali-11) v1

Overview
NameMC11g1121.1
TypemRNA
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionGlutamate-gated kainate-type ion channel receptor subunit GluR5
LocationMC11: 9645534 .. 9645752 (-)
Sequence length219
RNA-Seq ExpressionMC11g1121.1
SyntenyMC11g1121.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAGTTTCTTCGAAGTTTAGATTCATTCTGGTCTTAACGGCTGTTGTTATCGCCCTCGCCACTGTCTCGGAGGCGGCGAGGGTGCCAAGAGAGTATTGGGAGCAAATGATGCCAAAGAAGCTTCCATCGCCGTCCTCGGCACCATCGAAAGGGACCAACTCTGTGGCAAAGGCTGTGAAGGTTGATGGGATATTGCCCGCAAAGGAGGGGAAGGTT

mRNA sequence

ATGTTAGTTTCTTCGAAGTTTAGATTCATTCTGGTCTTAACGGCTGTTGTTATCGCCCTCGCCACTGTCTCGGAGGCGGCGAGGGTGCCAAGAGAGTATTGGGAGCAAATGATGCCAAAGAAGCTTCCATCGCCGTCCTCGGCACCATCGAAAGGGACCAACTCTGTGGCAAAGGCTGTGAAGGTTGATGGGATATTGCCCGCAAAGGAGGGGAAGGTT

Coding sequence (CDS)

ATGTTAGTTTCTTCGAAGTTTAGATTCATTCTGGTCTTAACGGCTGTTGTTATCGCCCTCGCCACTGTCTCGGAGGCGGCGAGGGTGCCAAGAGAGTATTGGGAGCAAATGATGCCAAAGAAGCTTCCATCGCCGTCCTCGGCACCATCGAAAGGGACCAACTCTGTGGCAAAGGCTGTGAAGGTTGATGGGATATTGCCCGCAAAGGAGGGGAAGGTT

Protein sequence

MLVSSKFRFILVLTAVVIALATVSEAARVPREYWEQMMPKKLPSPSSAPSKGTNSVAKAVKVDGILPAKEGKV
Homology
BLAST of MC11g1121.1 vs. NCBI nr
Match: KAE8646070.1 (hypothetical protein Csa_015561 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 6.75e-20
Identity = 49/77 (63.64%), Postives = 59/77 (76.62%), Query Frame = 0

Query: 1  MLVSSKFRFILVLTAVVIALATVSEAARVPREYWEQMMPKKLPSPSSAPSKGTNSVA--- 60
          ML+S  FRFIL LT V+   +  ++AARVP  YWEQM+PKKLPSPSSAPSKGTN+VA   
Sbjct: 1  MLLSFNFRFILFLTLVLALTSISTDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60

Query: 61 -KAVKVDGILPAKEGKV 73
           K +KV+G LPAK+G V
Sbjct: 61 SKPMKVNGNLPAKDGNV 77

BLAST of MC11g1121.1 vs. NCBI nr
Match: TYK23265.1 (glutamate-gated kainate-type ion channel receptor subunit GluR5 [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 9.59e-20
Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 0

Query: 1  MLVSSKFRFILVLTAVVIALATVSEAARVPREYWEQMMPKKLPSPSSAPSKGTNSVA--- 60
          ML++  FRFIL LT ++   +  S+AARVP  YWEQM+PKKLPSPSSAPSKGTN+VA   
Sbjct: 1  MLLAFNFRFILFLTLILALTSISSDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60

Query: 61 -KAVKVDGILPAKEGKV 73
           K +KV+G LPAK+G V
Sbjct: 61 SKPMKVNGNLPAKDGNV 77

BLAST of MC11g1121.1 vs. NCBI nr
Match: KAG6607702.1 (hypothetical protein SDJN03_01044, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.5 bits (197), Expect = 2.18e-17
Identity = 47/73 (64.38%), Postives = 55/73 (75.34%), Query Frame = 0

Query: 1  MLVSSKFRFILVLTAVVIALATVSEAARVPREYWEQMMPKKLPSPSSAPSKGTNSVA--- 60
          M +S + RFI +L  V+   +  SEAARVP +YWEQM+PKKLP+PSSAPSKGTNSVA   
Sbjct: 22 MFLSFRPRFIFILLLVLALASMSSEAARVPTKYWEQMLPKKLPTPSSAPSKGTNSVASSS 81

Query: 61 -KAVKVDGILPAK 69
           K VKVDG LPAK
Sbjct: 82 FKTVKVDGNLPAK 94

BLAST of MC11g1121.1 vs. NCBI nr
Match: TYH28223.1 (hypothetical protein ES288_A02G128000v1 [Gossypium darwinii])

HSP 1 Score: 73.2 bits (178), Expect = 4.79e-15
Identity = 43/77 (55.84%), Postives = 58/77 (75.32%), Query Frame = 0

Query: 1  MLVSSKFRFILVLTAVVIALATVSEAARVPREYWEQMMPKKLPSPSSAPSKGTNSV---- 60
          MLVS + + +L+L   ++A   +SEA+R P+ YWEQM+PKKLP+PSS+PSKGTNSV    
Sbjct: 1  MLVSCRHKCLLILF--LLAFILLSEASRSPKVYWEQMLPKKLPAPSSSPSKGTNSVTMST 60

Query: 61 AKAVKVDGILPAKEGKV 73
          +KAVK D  LP+ +GKV
Sbjct: 61 SKAVKPDRSLPSSDGKV 75

BLAST of MC11g1121.1 vs. NCBI nr
Match: PPR86316.1 (hypothetical protein GOBAR_AA34373 [Gossypium barbadense])

HSP 1 Score: 73.2 bits (178), Expect = 4.79e-15
Identity = 43/77 (55.84%), Postives = 58/77 (75.32%), Query Frame = 0

Query: 1  MLVSSKFRFILVLTAVVIALATVSEAARVPREYWEQMMPKKLPSPSSAPSKGTNSV---- 60
          MLVS + + +L+L   ++A   +SEA+R P+ YWEQM+PKKLP+PSS+PSKGTNSV    
Sbjct: 1  MLVSCRHKCLLILF--LLAFILLSEASRSPKVYWEQMLPKKLPTPSSSPSKGTNSVTMST 60

Query: 61 AKAVKVDGILPAKEGKV 73
          +KAVK D  LP+ +GKV
Sbjct: 61 SKAVKPDRSLPSSDGKV 75

BLAST of MC11g1121.1 vs. ExPASy TrEMBL
Match: A0A5D3DI56 (Glutamate-gated kainate-type ion channel receptor subunit GluR5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G003180 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.64e-20
Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 0

Query: 1  MLVSSKFRFILVLTAVVIALATVSEAARVPREYWEQMMPKKLPSPSSAPSKGTNSVA--- 60
          ML++  FRFIL LT ++   +  S+AARVP  YWEQM+PKKLPSPSSAPSKGTN+VA   
Sbjct: 1  MLLAFNFRFILFLTLILALTSISSDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60

Query: 61 -KAVKVDGILPAKEGKV 73
           K +KV+G LPAK+G V
Sbjct: 61 SKPMKVNGNLPAKDGNV 77

BLAST of MC11g1121.1 vs. ExPASy TrEMBL
Match: A0A2P5W5E0 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA34373 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.32e-15
Identity = 43/77 (55.84%), Postives = 58/77 (75.32%), Query Frame = 0

Query: 1  MLVSSKFRFILVLTAVVIALATVSEAARVPREYWEQMMPKKLPSPSSAPSKGTNSV---- 60
          MLVS + + +L+L   ++A   +SEA+R P+ YWEQM+PKKLP+PSS+PSKGTNSV    
Sbjct: 1  MLVSCRHKCLLILF--LLAFILLSEASRSPKVYWEQMLPKKLPTPSSSPSKGTNSVTMST 60

Query: 61 AKAVKVDGILPAKEGKV 73
          +KAVK D  LP+ +GKV
Sbjct: 61 SKAVKPDRSLPSSDGKV 75

BLAST of MC11g1121.1 vs. ExPASy TrEMBL
Match: A0A5D2HDH0 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A02G128000v1 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.32e-15
Identity = 43/77 (55.84%), Postives = 58/77 (75.32%), Query Frame = 0

Query: 1  MLVSSKFRFILVLTAVVIALATVSEAARVPREYWEQMMPKKLPSPSSAPSKGTNSV---- 60
          MLVS + + +L+L   ++A   +SEA+R P+ YWEQM+PKKLP+PSS+PSKGTNSV    
Sbjct: 1  MLVSCRHKCLLILF--LLAFILLSEASRSPKVYWEQMLPKKLPAPSSSPSKGTNSVTMST 60

Query: 61 AKAVKVDGILPAKEGKV 73
          +KAVK D  LP+ +GKV
Sbjct: 61 SKAVKPDRSLPSSDGKV 75

BLAST of MC11g1121.1 vs. ExPASy TrEMBL
Match: A0A803PR73 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.72e-14
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 0

Query: 18  IALATVSEAARVPREYWEQMMPKKLPSPSSAPSKGTNSV----AKAVKVDGILPAKEGKV 73
           IA   +SEA+R+P+EY++QMMPKKLPSPSS+PSKGTNSV    +KAVK D  LP+ +GKV
Sbjct: 53  IAFIDLSEASRLPKEYFKQMMPKKLPSPSSSPSKGTNSVTTSSSKAVKADANLPSFDGKV 112

BLAST of MC11g1121.1 vs. ExPASy TrEMBL
Match: A0A7J6I408 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_003228 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.72e-14
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 0

Query: 18  IALATVSEAARVPREYWEQMMPKKLPSPSSAPSKGTNSV----AKAVKVDGILPAKEGKV 73
           IA   +SEA+R+P+EY++QMMPKKLPSPSS+PSKGTNSV    +KAVK D  LP+ +GKV
Sbjct: 53  IAFIDLSEASRLPKEYFKQMMPKKLPSPSSSPSKGTNSVTTSSSKAVKADANLPSFDGKV 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8646070.16.75e-2063.64hypothetical protein Csa_015561 [Cucumis sativus][more]
TYK23265.19.59e-2062.34glutamate-gated kainate-type ion channel receptor subunit GluR5 [Cucumis melo va... [more]
KAG6607702.12.18e-1764.38hypothetical protein SDJN03_01044, partial [Cucurbita argyrosperma subsp. sorori... [more]
TYH28223.14.79e-1555.84hypothetical protein ES288_A02G128000v1 [Gossypium darwinii][more]
PPR86316.14.79e-1555.84hypothetical protein GOBAR_AA34373 [Gossypium barbadense][more]
Match NameE-valueIdentityDescription
A0A5D3DI564.64e-2062.34Glutamate-gated kainate-type ion channel receptor subunit GluR5 OS=Cucumis melo ... [more]
A0A2P5W5E02.32e-1555.84Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA34373 PE=4 SV... [more]
A0A5D2HDH02.32e-1555.84Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A02G128000v1 PE=... [more]
A0A803PR731.72e-1465.00Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A7J6I4081.72e-1465.00Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_003228 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MC11g1121MC11g1121gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MC11g1121.1-cdsMC11g1121.1-cds-MC11:9645534..9645752CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MC11g1121.1MC11g1121.1-proteinpolypeptide