MC10g_new0359.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC10g_new0359.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	DNA mismatch repair protein MLH3 isoform X2
Location	MC10: 17853016 .. 17855094 (-)
Sequence length	507
RNA-Seq Expression	MC10g_new0359.1
Synteny	MC10g_new0359.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTTGAAAGAAGCTGGAGATCTAGAGATAGGGGACACCCTTCCCTTCAGGGATTTGGTGGATGGTGAGGAAAAAGGCTGGGAATTTAATGATGCTAACATGTTGAAAGGTTCCAACAAAAGAAATTATTTCTCAAGTTGTATTCAATAGTAAACTGATAATTGATGATGTTTTTGATACAAGACTATACGCCTTAGTAACTTTCTTGAAAAACCAAGTAATTTTAAACATTCTTCTCCTATGGGTTCAGATATGCTCTCTGGTCAGAAAGATGTTTTTAGTTGGAGATTACTTAGAAAAGATTGTGAAAAAAGGCCAATAAGAGGCAATTTAGCTCCACCTTTCTAAGAAAGACTAGTTTCTATTGCCTGGACCAAAGAAAGGCAGAAAAGCTTAATGCCACTATTTTGGATTTTGCCTGTACCAAAGAAAGGCAGAAAAGGTCTTTAATGCCACTAATTCCTATTGCATGGACCAAGGGAAATTGAAAAGCTTAAGGCATCGGTCATATGACACCCCACCTCATTTTACCAGCAAGACTTTGTCACTATGAAATACTAATTTTGTGCCCTTGTAGTAGTGCACATAACTAGATGAACCGAGAGATTCCAAACATTTCTCTGGTACAAGTAATCTGATTGTCAAGCCATGTCCTGTTGATGACTTATTTATGGGAACCAGGTGGACAGCCATTCCTTTCCTCAATCAATTTAAGGTTGTAATAGTTGTTTTTAGGATATAAAGCACTTTTTCTTCACTTTCTGAACAGATACGAAAAAGATACCTGAGTTTAAGGAAAATAATGGAGAGAAACAAGGAGGAGAAATTTCCAAGCAGTTCCAGTCCCTTGATGATAAAGTTACCGCATCAACAGATACGAAAAAGATACCTGATTTTAAGGAAAATAATGAAGAGAAACAAGGAGGAGAAATTTCCAAGCAGTCCCAGTCCCTTGATGATAAAGTTACCGCATCTGCTATAGGTAACTACACTGTGTGTATGAAACTGATTATTTCTTTGTTCTTAAGGATTTGTCTTATGATATTTCAATATCTAGAGAGGTAATTGGTTCTTATGTGATTATAATACATCGGTAGAATCTTGTGCTATTATTTTCTTCTCATGCAGATTTAGTAGTTAATCATTTGTGGTAATAGTGTTTAATAAAAAATAGTGTTTAGTAAGGATACTTAAGTCAATTGGTCATCCAAAAGTTAGCTATTATAGCTAATTAGCATGCCACATTGGTTTATAATTTTGCTGTACTCGAATATTGATTTTTATGTGATGGTAGTAACATCTTTACTGGCTGAGAAATATTACTTCAGTGCTTTTTCTAGTCAGCATATTAGCTAAATTCTTAAATATCCTCCCCTTCTATTCAGATTGCATAGTTTTGACCCTGTGTTTCACCTCTAGAATTATGCTCAATGGAAACTGTCAAGAGTCCTCAAATTTATGGATCAAATGGCAAAATTGCTGTCTAATTGCAGTTAAGTTTGAAATTTAATTTGTTTACTTTAGTTTGATGTGAGGCTTTGTTTTGGGATTTTTTTTAATAATTTATTTCACTAACATTTAATAGTTCTTTTTTTAATTGATTTCAGTGAAATGATGAGTCACGTGCTTCGAAGATGAGTGTAGTATGCTCAATACCTCTTCAGGGTTCCTATTTCTTGCCAGCAATTCCTTAGTTATCAATTCCATCAATAAGAACTTCCTTGAAGATGCCAAGGTTCTTCTACAACTGGATAAGAAGTTCATTCCAGTTGTTTCTGGTGGCACGCTGGCTGTTATTGATCAGGTTAGTTCACTTCCTTTTAGGCGTTCTTTGTTTTTTCTGGTTTTGGGTCTACTAGGTGGTTTTAATTTTTTGTTTTCTTTTTTCCCGTACATGATCCATCGAATTAATTAGTGGCTGTTATAACTAAAAATTTGTTATGTAATAAGCTTTGATTGTAATCGGCAATATCGTCTCTCGTTTTCTCCTAAAAAAAAGTAACCATTTTAATTTGGTTCGTGTCATTATGTTAGAGTGTATTACTTAACCAATGTATAATAGAGAGCCTTAAATAA

mRNA sequence

ATGCAGTTGAAAGAAGCTGGAGATCTAGAGATAGGGGACACCCTTCCCTTCAGGGATTTGGTGGATGGTGAGGAAAAAGGCTGGGAATTTAATGATGCTAACATGTTGAAAGATACGAAAAAGATACCTGAGTTTAAGGAAAATAATGGAGAGAAACAAGGAGGAGAAATTTCCAAGCAGTTCCAGTCCCTTGATGATAAAGTTACCGCATCAACAGATACGAAAAAGATACCTGATTTTAAGGAAAATAATGAAGAGAAACAAGGAGGAGAAATTTCCAAGCAGTCCCAGTCCCTTGATGATAAAGTTACCGCATCTGCTATAGGGTTCCTATTTCTTGCCAGCAATTCCTTAGTTATCAATTCCATCAATAAGAACTTCCTTGAAGATGCCAAGGTTCTTCTACAACTGGATAAGAAGTTCATTCCAGTTGTTTCTGGTGGCACGCTGGCTGTTATTGATCAGAGTGTATTACTTAACCAATGTATAATAGAGAGCCTTAAATAA

Coding sequence (CDS)

ATGCAGTTGAAAGAAGCTGGAGATCTAGAGATAGGGGACACCCTTCCCTTCAGGGATTTGGTGGATGGTGAGGAAAAAGGCTGGGAATTTAATGATGCTAACATGTTGAAAGATACGAAAAAGATACCTGAGTTTAAGGAAAATAATGGAGAGAAACAAGGAGGAGAAATTTCCAAGCAGTTCCAGTCCCTTGATGATAAAGTTACCGCATCAACAGATACGAAAAAGATACCTGATTTTAAGGAAAATAATGAAGAGAAACAAGGAGGAGAAATTTCCAAGCAGTCCCAGTCCCTTGATGATAAAGTTACCGCATCTGCTATAGGGTTCCTATTTCTTGCCAGCAATTCCTTAGTTATCAATTCCATCAATAAGAACTTCCTTGAAGATGCCAAGGTTCTTCTACAACTGGATAAGAAGTTCATTCCAGTTGTTTCTGGTGGCACGCTGGCTGTTATTGATCAGAGTGTATTACTTAACCAATGTATAATAGAGAGCCTTAAATAA

Protein sequence

MQLKEAGDLEIGDTLPFRDLVDGEEKGWEFNDANMLKDTKKIPEFKENNGEKQGGEISKQFQSLDDKVTASTDTKKIPDFKENNEEKQGGEISKQSQSLDDKVTASAIGFLFLASNSLVINSINKNFLEDAKVLLQLDKKFIPVVSGGTLAVIDQSVLLNQCIIESLK

Homology

[Close]

BLAST of MC10g_new0359.1 vs. ExPASy Swiss-Prot
Match: F4JN26 (DNA mismatch repair protein MLH3 OS=Arabidopsis thaliana OX=3702 GN=MLH3 PE=2 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-07
Identity = 36/81 (44.44%), Postives = 53/81 (65.43%), Query Frame = 0


Query: 91  EISKQSQSL--DDKVTASAIGFLFLASN-SLVINSINKNFLEDAKVLLQLDKKFIPVVSG 150
           ++ K+S  L   D V   + G L L S+ SLV  SIN++ LEDAKVL Q+DKK+IP+V+ 
Sbjct: 878 QVPKESHELHGQDGVFDISSGLLHLRSDESLVPESINRHSLEDAKVLQQVDKKYIPIVAC 937

Query: 151 GTLAVIDQSVLLNQCIIESLK 169
           GT+A++DQ     +  +E L+
Sbjct: 938 GTVAIVDQHAADERIRLEELR 958

[Close]

BLAST of MC10g_new0359.1 vs. NCBI nr
Match: XP_022158272.1 (DNA mismatch repair protein MLH3 isoform X4 [Momordica charantia])

HSP 1 Score: 119 bits (297), Expect = 1.88e-27
Identity = 77/144 (53.47%), Postives = 83/144 (57.64%), Query Frame = 0


Query: 68   VTASTDTKKIPDFKENNEEKQGGEISKQSQSLDDKVTASAI------------------- 127
            +   TDTK+I DFKENN E QGGEISKQSQSLDDKVT SAI                   
Sbjct: 897  IGTRTDTKRIHDFKENNNENQGGEISKQSQSLDDKVTTSAIELCSKETQESSDLWIKWQH 956

Query: 128  ------------------------GFLFLASNSLVINSINKNFLEDAKVLLQLDKKFIPV 168
                                    GFL LASNSLV NSI+KNFLEDAKVLLQLD KFIPV
Sbjct: 957  CCPVARNYESHASEDEISILDISSGFLSLASNSLVPNSIDKNFLEDAKVLLQLDNKFIPV 1016

[Close]

BLAST of MC10g_new0359.1 vs. NCBI nr
Match: XP_022158270.1 (DNA mismatch repair protein MLH3 isoform X2 [Momordica charantia])

HSP 1 Score: 119 bits (297), Expect = 1.90e-27
Identity = 77/144 (53.47%), Postives = 83/144 (57.64%), Query Frame = 0


Query: 68   VTASTDTKKIPDFKENNEEKQGGEISKQSQSLDDKVTASAI------------------- 127
            +   TDTK+I DFKENN E QGGEISKQSQSLDDKVT SAI                   
Sbjct: 858  IGTRTDTKRIHDFKENNNENQGGEISKQSQSLDDKVTTSAIELCSKETQESSDLWIKWQH 917

Query: 128  ------------------------GFLFLASNSLVINSINKNFLEDAKVLLQLDKKFIPV 168
                                    GFL LASNSLV NSI+KNFLEDAKVLLQLD KFIPV
Sbjct: 918  CCPVARNYESHASEDEISILDISSGFLSLASNSLVPNSIDKNFLEDAKVLLQLDNKFIPV 977

[Close]

BLAST of MC10g_new0359.1 vs. NCBI nr
Match: XP_022158269.1 (DNA mismatch repair protein MLH3 isoform X1 [Momordica charantia])

HSP 1 Score: 119 bits (297), Expect = 1.90e-27
Identity = 77/144 (53.47%), Postives = 83/144 (57.64%), Query Frame = 0


Query: 68   VTASTDTKKIPDFKENNEEKQGGEISKQSQSLDDKVTASAI------------------- 127
            +   TDTK+I DFKENN E QGGEISKQSQSLDDKVT SAI                   
Sbjct: 883  IGTRTDTKRIHDFKENNNENQGGEISKQSQSLDDKVTTSAIELCSKETQESSDLWIKWQH 942

Query: 128  ------------------------GFLFLASNSLVINSINKNFLEDAKVLLQLDKKFIPV 168
                                    GFL LASNSLV NSI+KNFLEDAKVLLQLD KFIPV
Sbjct: 943  CCPVARNYESHASEDEISILDISSGFLSLASNSLVPNSIDKNFLEDAKVLLQLDNKFIPV 1002

[Close]

BLAST of MC10g_new0359.1 vs. NCBI nr
Match: XP_022158273.1 (DNA mismatch repair protein MLH3 isoform X5 [Momordica charantia])

HSP 1 Score: 117 bits (294), Expect = 4.75e-27
Identity = 75/131 (57.25%), Postives = 78/131 (59.54%), Query Frame = 0


Query: 68   VTASTDTKKIPDFKENNEEKQGGEISKQSQSLDDKVTASAI------------------- 127
            +   TDTK+I DFKENN E QGGEISKQSQSLDDKVT SAI                   
Sbjct: 897  IGTRTDTKRIHDFKENNNENQGGEISKQSQSLDDKVTTSAIELCSKETQESSDLWIKWQH 956

Query: 128  ------------------------GFLFLASNSLVINSINKNFLEDAKVLLQLDKKFIPV 155
                                    GFL LASNSLV NSI+KNFLEDAKVLLQLD KFIPV
Sbjct: 957  CCPVARNYESHASEDEISILDISSGFLSLASNSLVPNSIDKNFLEDAKVLLQLDNKFIPV 1016

[Close]

BLAST of MC10g_new0359.1 vs. NCBI nr
Match: XP_022158271.1 (DNA mismatch repair protein MLH3 isoform X3 [Momordica charantia])

HSP 1 Score: 117 bits (294), Expect = 4.77e-27
Identity = 75/131 (57.25%), Postives = 78/131 (59.54%), Query Frame = 0


Query: 68   VTASTDTKKIPDFKENNEEKQGGEISKQSQSLDDKVTASAI------------------- 127
            +   TDTK+I DFKENN E QGGEISKQSQSLDDKVT SAI                   
Sbjct: 897  IGTRTDTKRIHDFKENNNENQGGEISKQSQSLDDKVTTSAIELCSKETQESSDLWIKWQH 956

Query: 128  ------------------------GFLFLASNSLVINSINKNFLEDAKVLLQLDKKFIPV 155
                                    GFL LASNSLV NSI+KNFLEDAKVLLQLD KFIPV
Sbjct: 957  CCPVARNYESHASEDEISILDISSGFLSLASNSLVPNSIDKNFLEDAKVLLQLDNKFIPV 1016

[Close]

BLAST of MC10g_new0359.1 vs. ExPASy TrEMBL
Match: A0A6J1DWT6 (DNA mismatch repair protein MLH3 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111024800 PE=3 SV=1)

HSP 1 Score: 119 bits (297), Expect = 9.11e-28
Identity = 77/144 (53.47%), Postives = 83/144 (57.64%), Query Frame = 0


Query: 68   VTASTDTKKIPDFKENNEEKQGGEISKQSQSLDDKVTASAI------------------- 127
            +   TDTK+I DFKENN E QGGEISKQSQSLDDKVT SAI                   
Sbjct: 897  IGTRTDTKRIHDFKENNNENQGGEISKQSQSLDDKVTTSAIELCSKETQESSDLWIKWQH 956

Query: 128  ------------------------GFLFLASNSLVINSINKNFLEDAKVLLQLDKKFIPV 168
                                    GFL LASNSLV NSI+KNFLEDAKVLLQLD KFIPV
Sbjct: 957  CCPVARNYESHASEDEISILDISSGFLSLASNSLVPNSIDKNFLEDAKVLLQLDNKFIPV 1016

[Close]

BLAST of MC10g_new0359.1 vs. ExPASy TrEMBL
Match: A0A6J1DVD7 (DNA mismatch repair protein MLH3 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024800 PE=3 SV=1)

HSP 1 Score: 119 bits (297), Expect = 9.19e-28
Identity = 77/144 (53.47%), Postives = 83/144 (57.64%), Query Frame = 0


Query: 68   VTASTDTKKIPDFKENNEEKQGGEISKQSQSLDDKVTASAI------------------- 127
            +   TDTK+I DFKENN E QGGEISKQSQSLDDKVT SAI                   
Sbjct: 858  IGTRTDTKRIHDFKENNNENQGGEISKQSQSLDDKVTTSAIELCSKETQESSDLWIKWQH 917

Query: 128  ------------------------GFLFLASNSLVINSINKNFLEDAKVLLQLDKKFIPV 168
                                    GFL LASNSLV NSI+KNFLEDAKVLLQLD KFIPV
Sbjct: 918  CCPVARNYESHASEDEISILDISSGFLSLASNSLVPNSIDKNFLEDAKVLLQLDNKFIPV 977

[Close]

BLAST of MC10g_new0359.1 vs. ExPASy TrEMBL
Match: A0A6J1DYW9 (DNA mismatch repair protein MLH3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024800 PE=3 SV=1)

HSP 1 Score: 119 bits (297), Expect = 9.21e-28
Identity = 77/144 (53.47%), Postives = 83/144 (57.64%), Query Frame = 0


Query: 68   VTASTDTKKIPDFKENNEEKQGGEISKQSQSLDDKVTASAI------------------- 127
            +   TDTK+I DFKENN E QGGEISKQSQSLDDKVT SAI                   
Sbjct: 883  IGTRTDTKRIHDFKENNNENQGGEISKQSQSLDDKVTTSAIELCSKETQESSDLWIKWQH 942

Query: 128  ------------------------GFLFLASNSLVINSINKNFLEDAKVLLQLDKKFIPV 168
                                    GFL LASNSLV NSI+KNFLEDAKVLLQLD KFIPV
Sbjct: 943  CCPVARNYESHASEDEISILDISSGFLSLASNSLVPNSIDKNFLEDAKVLLQLDNKFIPV 1002

[Close]

BLAST of MC10g_new0359.1 vs. ExPASy TrEMBL
Match: A0A6J1DVM2 (DNA mismatch repair protein MLH3 isoform X5 OS=Momordica charantia OX=3673 GN=LOC111024800 PE=3 SV=1)

HSP 1 Score: 117 bits (294), Expect = 2.30e-27
Identity = 75/131 (57.25%), Postives = 78/131 (59.54%), Query Frame = 0


Query: 68   VTASTDTKKIPDFKENNEEKQGGEISKQSQSLDDKVTASAI------------------- 127
            +   TDTK+I DFKENN E QGGEISKQSQSLDDKVT SAI                   
Sbjct: 897  IGTRTDTKRIHDFKENNNENQGGEISKQSQSLDDKVTTSAIELCSKETQESSDLWIKWQH 956

Query: 128  ------------------------GFLFLASNSLVINSINKNFLEDAKVLLQLDKKFIPV 155
                                    GFL LASNSLV NSI+KNFLEDAKVLLQLD KFIPV
Sbjct: 957  CCPVARNYESHASEDEISILDISSGFLSLASNSLVPNSIDKNFLEDAKVLLQLDNKFIPV 1016

[Close]

BLAST of MC10g_new0359.1 vs. ExPASy TrEMBL
Match: A0A6J1E0G9 (DNA mismatch repair protein MLH3 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111024800 PE=3 SV=1)

HSP 1 Score: 117 bits (294), Expect = 2.31e-27
Identity = 75/131 (57.25%), Postives = 78/131 (59.54%), Query Frame = 0


Query: 68   VTASTDTKKIPDFKENNEEKQGGEISKQSQSLDDKVTASAI------------------- 127
            +   TDTK+I DFKENN E QGGEISKQSQSLDDKVT SAI                   
Sbjct: 897  IGTRTDTKRIHDFKENNNENQGGEISKQSQSLDDKVTTSAIELCSKETQESSDLWIKWQH 956

Query: 128  ------------------------GFLFLASNSLVINSINKNFLEDAKVLLQLDKKFIPV 155
                                    GFL LASNSLV NSI+KNFLEDAKVLLQLD KFIPV
Sbjct: 957  CCPVARNYESHASEDEISILDISSGFLSLASNSLVPNSIDKNFLEDAKVLLQLDNKFIPV 1016

[Close]

BLAST of MC10g_new0359.1 vs. TAIR 10
Match: AT4G35520.1 (MUTL protein homolog 3 )

HSP 1 Score: 58.2 bits (139), Expect = 7.6e-09
Identity = 36/81 (44.44%), Postives = 53/81 (65.43%), Query Frame = 0


Query: 91  EISKQSQSL--DDKVTASAIGFLFLASN-SLVINSINKNFLEDAKVLLQLDKKFIPVVSG 150
           ++ K+S  L   D V   + G L L S+ SLV  SIN++ LEDAKVL Q+DKK+IP+V+ 
Sbjct: 878 QVPKESHELHGQDGVFDISSGLLHLRSDESLVPESINRHSLEDAKVLQQVDKKYIPIVAC 937

Query: 151 GTLAVIDQSVLLNQCIIESLK 169
           GT+A++DQ     +  +E L+
Sbjct: 938 GTVAIVDQHAADERIRLEELR 958

The following BLAST results are available for this feature:

BLAST of MC10g_new0359.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JN26	1.1e-07	44.44	DNA mismatch repair protein MLH3 OS=Arabidopsis thaliana OX=3702 GN=MLH3 PE=2 SV...	[more]

BLAST of MC10g_new0359.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158272.1	1.88e-27	53.47	DNA mismatch repair protein MLH3 isoform X4 [Momordica charantia]	[more]
XP_022158270.1	1.90e-27	53.47	DNA mismatch repair protein MLH3 isoform X2 [Momordica charantia]	[more]
XP_022158269.1	1.90e-27	53.47	DNA mismatch repair protein MLH3 isoform X1 [Momordica charantia]	[more]
XP_022158273.1	4.75e-27	57.25	DNA mismatch repair protein MLH3 isoform X5 [Momordica charantia]	[more]
XP_022158271.1	4.77e-27	57.25	DNA mismatch repair protein MLH3 isoform X3 [Momordica charantia]	[more]

BLAST of MC10g_new0359.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DWT6	9.11e-28	53.47	DNA mismatch repair protein MLH3 isoform X4 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1DVD7	9.19e-28	53.47	DNA mismatch repair protein MLH3 isoform X2 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1DYW9	9.21e-28	53.47	DNA mismatch repair protein MLH3 isoform X1 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1DVM2	2.30e-27	57.25	DNA mismatch repair protein MLH3 isoform X5 OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1E0G9	2.31e-27	57.25	DNA mismatch repair protein MLH3 isoform X3 OS=Momordica charantia OX=3673 GN=LO...	[more]

BLAST of MC10g_new0359.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35520.1	7.6e-09	44.44	MUTL protein homolog 3	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..68

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC10g_new0359	MC10g_new0359	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC10g_new0359.1-cds	MC10g_new0359.1-cds-MC10:17853016..17853057	CDS
MC10g_new0359.1-cds	MC10g_new0359.1-cds-MC10:17853288..17853427	CDS
MC10g_new0359.1-cds	MC10g_new0359.1-cds-MC10:17854110..17854322	CDS
MC10g_new0359.1-cds	MC10g_new0359.1-cds-MC10:17854983..17855094	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC10g_new0359.1	MC10g_new0359.1-protein	polypeptide