MC10g1004.1 (mRNA) Bitter gourd (Dali-11) v1

Overview
NameMC10g1004.1
TypemRNA
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionAutophagy-related protein 3
LocationMC10: 9323638 .. 9323838 (+)
Sequence length201
RNA-Seq ExpressionMC10g1004.1
SyntenyMC10g1004.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGTAAACCGGAAAAATCTAGGGCTGTGACGAAGAATCTATCGGCATGCGATGTTGAAGCTCTCAGGAAATGCTTGCAGGAAAACAACGGCGATCGTATAAAGTGCGAGTCTCAAATACAGGCCTTCAAGTCTTCTTGCTCCCTGAAGAAACCAAACTCATCTCTGCAATCTGGAAGGGACCTCCAGACTGGTGTT

mRNA sequence

ATGGATGGTAAACCGGAAAAATCTAGGGCTGTGACGAAGAATCTATCGGCATGCGATGTTGAAGCTCTCAGGAAATGCTTGCAGGAAAACAACGGCGATCGTATAAAGTGCGAGTCTCAAATACAGGCCTTCAAGTCTTCTTGCTCCCTGAAGAAACCAAACTCATCTCTGCAATCTGGAAGGGACCTCCAGACTGGTGTT

Coding sequence (CDS)

ATGGATGGTAAACCGGAAAAATCTAGGGCTGTGACGAAGAATCTATCGGCATGCGATGTTGAAGCTCTCAGGAAATGCTTGCAGGAAAACAACGGCGATCGTATAAAGTGCGAGTCTCAAATACAGGCCTTCAAGTCTTCTTGCTCCCTGAAGAAACCAAACTCATCTCTGCAATCTGGAAGGGACCTCCAGACTGGTGTT

Protein sequence

MDGKPEKSRAVTKNLSACDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNSSLQSGRDLQTGV
Homology
BLAST of MC10g1004.1 vs. NCBI nr
Match: KAE8650146.1 (hypothetical protein Csa_010997, partial [Cucumis sativus])

HSP 1 Score: 102 bits (253), Expect = 1.09e-26
Identity = 51/62 (82.26%), Postives = 54/62 (87.10%), Query Frame = 0

Query: 1  MDGKPEKSRAVTKNLSACDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNSSLQSG 60
          MDG  EKSRAVTKN S CDVEAL+KCLQENNGDR+KCESQIQAF  SCSLKK N SLQSG
Sbjct: 1  MDGITEKSRAVTKNPSPCDVEALKKCLQENNGDRVKCESQIQAFMFSCSLKKSNPSLQSG 60

Query: 61 RD 62
          R+
Sbjct: 61 RN 62

BLAST of MC10g1004.1 vs. NCBI nr
Match: KAG2700530.1 (hypothetical protein I3760_06G001700 [Carya illinoinensis] >KAG6649858.1 hypothetical protein CIPAW_06G002300 [Carya illinoinensis] >KAG6706844.1 hypothetical protein I3842_06G001700 [Carya illinoinensis] >KAG7973556.1 hypothetical protein I3843_06G001700 [Carya illinoinensis])

HSP 1 Score: 85.5 bits (210), Expect = 4.39e-20
Identity = 44/67 (65.67%), Postives = 54/67 (80.60%), Query Frame = 0

Query: 1  MDGKPEKSRAVTKNLSACDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNSSLQSG 60
          MD K E S A+ K  S CDVEAL+KCL+EN+GD +KC+SQI+AFKSSCSLKKPN+S +S 
Sbjct: 1  MDEKAE-SIALMKIRSPCDVEALKKCLEENDGDYVKCQSQIEAFKSSCSLKKPNTSQESA 60

Query: 61 RDLQTGV 67
            L+TGV
Sbjct: 61 PQLRTGV 66

BLAST of MC10g1004.1 vs. NCBI nr
Match: KAE8077726.1 (hypothetical protein FH972_016259 [Carpinus fangiana])

HSP 1 Score: 83.6 bits (205), Expect = 2.90e-19
Identity = 42/65 (64.62%), Postives = 52/65 (80.00%), Query Frame = 0

Query: 1  MDGKPEKSRAVTKNLSACDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNSSLQSG 60
          MD + E S +  K +S CDVEAL+KCL+ENNGD +KC+SQI+AFKSSCSLKKPNSS +S 
Sbjct: 1  MDERAE-SNSAKKIMSPCDVEALKKCLEENNGDYVKCQSQIEAFKSSCSLKKPNSSQESE 60

Query: 61 RDLQT 65
            L+T
Sbjct: 61 PQLKT 64

BLAST of MC10g1004.1 vs. NCBI nr
Match: KAE9589066.1 (hypothetical protein Lalb_Chr21g0305111 [Lupinus albus])

HSP 1 Score: 82.4 bits (202), Expect = 5.50e-19
Identity = 37/56 (66.07%), Postives = 49/56 (87.50%), Query Frame = 0

Query: 1  MDGKPEKSRAVTKNLSACDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNSS 56
          MD K E++++V K +SACDV+AL+KCL++N GD +KC+SQI+AFKSSCSLKKPN S
Sbjct: 1  MDQKVEENKSVKKIISACDVDALKKCLEDNKGDYVKCQSQIEAFKSSCSLKKPNPS 56

BLAST of MC10g1004.1 vs. NCBI nr
Match: KAE8077725.1 (hypothetical protein FH972_016259 [Carpinus fangiana])

HSP 1 Score: 83.6 bits (205), Expect = 5.85e-19
Identity = 42/65 (64.62%), Postives = 52/65 (80.00%), Query Frame = 0

Query: 1  MDGKPEKSRAVTKNLSACDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNSSLQSG 60
          MD + E S +  K +S CDVEAL+KCL+ENNGD +KC+SQI+AFKSSCSLKKPNSS +S 
Sbjct: 1  MDERAE-SNSAKKIMSPCDVEALKKCLEENNGDYVKCQSQIEAFKSSCSLKKPNSSQESE 60

Query: 61 RDLQT 65
            L+T
Sbjct: 61 PQLKT 64

BLAST of MC10g1004.1 vs. ExPASy TrEMBL
Match: A0A0A0L2G8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G081365 PE=4 SV=1)

HSP 1 Score: 105 bits (262), Expect = 2.36e-28
Identity = 55/68 (80.88%), Postives = 57/68 (83.82%), Query Frame = 0

Query: 1  MDGKPEKSRAVTKNLSACDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNSSLQSG 60
          MDG  EKSRAVTKN S CDVEAL+KCLQENNGDR+KCESQIQAF  SCSLKK N SLQSG
Sbjct: 1  MDGITEKSRAVTKNPSPCDVEALKKCLQENNGDRVKCESQIQAFMFSCSLKKSNPSLQSG 60

Query: 61 R-DLQTGV 67
          R D  TGV
Sbjct: 61 RNDFDTGV 68

BLAST of MC10g1004.1 vs. ExPASy TrEMBL
Match: A0A5N6RHF1 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_016259 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.40e-19
Identity = 42/65 (64.62%), Postives = 52/65 (80.00%), Query Frame = 0

Query: 1  MDGKPEKSRAVTKNLSACDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNSSLQSG 60
          MD + E S +  K +S CDVEAL+KCL+ENNGD +KC+SQI+AFKSSCSLKKPNSS +S 
Sbjct: 1  MDERAE-SNSAKKIMSPCDVEALKKCLEENNGDYVKCQSQIEAFKSSCSLKKPNSSQESE 60

Query: 61 RDLQT 65
            L+T
Sbjct: 61 PQLKT 64

BLAST of MC10g1004.1 vs. ExPASy TrEMBL
Match: A0A6A4N3Q2 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr21g0305111 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.66e-19
Identity = 37/56 (66.07%), Postives = 49/56 (87.50%), Query Frame = 0

Query: 1  MDGKPEKSRAVTKNLSACDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNSS 56
          MD K E++++V K +SACDV+AL+KCL++N GD +KC+SQI+AFKSSCSLKKPN S
Sbjct: 1  MDQKVEENKSVKKIISACDVDALKKCLEDNKGDYVKCQSQIEAFKSSCSLKKPNPS 56

BLAST of MC10g1004.1 vs. ExPASy TrEMBL
Match: A0A5N6RFC3 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_016259 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.83e-19
Identity = 42/65 (64.62%), Postives = 52/65 (80.00%), Query Frame = 0

Query: 1  MDGKPEKSRAVTKNLSACDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNSSLQSG 60
          MD + E S +  K +S CDVEAL+KCL+ENNGD +KC+SQI+AFKSSCSLKKPNSS +S 
Sbjct: 1  MDERAE-SNSAKKIMSPCDVEALKKCLEENNGDYVKCQSQIEAFKSSCSLKKPNSSQESE 60

Query: 61 RDLQT 65
            L+T
Sbjct: 61 PQLKT 64

BLAST of MC10g1004.1 vs. ExPASy TrEMBL
Match: A0A067EDM2 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g035370mg PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.18e-19
Identity = 38/61 (62.30%), Postives = 49/61 (80.33%), Query Frame = 0

Query: 7  KSRAVTKNLSACDVEALRKCLQENNGDRIKCESQIQAFKSSCSLKKPNSSLQSGRDLQTG 66
          +S    K +S CDVEAL+KCL+EN GD +KC+SQI+AFKSSCSLKKP+SSL+S +   +G
Sbjct: 6  ESNGAKKIMSPCDVEALKKCLEENKGDYVKCQSQIEAFKSSCSLKKPSSSLESKQQFNSG 65

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8650146.11.09e-2682.26hypothetical protein Csa_010997, partial [Cucumis sativus][more]
KAG2700530.14.39e-2065.67hypothetical protein I3760_06G001700 [Carya illinoinensis] >KAG6649858.1 hypothe... [more]
KAE8077726.12.90e-1964.62hypothetical protein FH972_016259 [Carpinus fangiana][more]
KAE9589066.15.50e-1966.07hypothetical protein Lalb_Chr21g0305111 [Lupinus albus][more]
KAE8077725.15.85e-1964.62hypothetical protein FH972_016259 [Carpinus fangiana][more]
Match NameE-valueIdentityDescription
A0A0A0L2G82.36e-2880.88Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G081365 PE=4 SV=1[more]
A0A5N6RHF11.40e-1964.62Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_016259 PE=4 SV=1[more]
A0A6A4N3Q22.66e-1966.07Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr21g0305111 PE=4 SV=1[more]
A0A5N6RFC32.83e-1964.62Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_016259 PE=4 SV=1[more]
A0A067EDM23.18e-1962.30Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g035370mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36856:SF1OS07G0175200 PROTEINcoord: 1..62
NoneNo IPR availablePANTHERPTHR36856OS07G0175200 PROTEINcoord: 1..62
IPR009069Cysteine alpha-hairpin motif superfamilySUPERFAMILY47072Cysteine alpha-hairpin motifcoord: 21..48

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MC10g1004MC10g1004gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MC10g1004.1-cdsMC10g1004.1-cds-MC10:9323638..9323838CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MC10g1004.1MC10g1004.1-proteinpolypeptide