MC09g1081.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC09g1081.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	mRNA cap-binding protein
Location	MC09: 16666021 .. 16666350 (+)
Sequence length	237
RNA-Seq Expression	MC09g1081.1
Synteny	MC09g1081.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTATACTACAATATCCATCATCCAACCAAGTTGACATCCAGGGTAGATTTGATTTGTGCTGTTTTAAACATAAAACTGAGCATTAATTGTAGGATCCTGTTTGCGAGGGGAATGGACTGTAAACTTTCAAGGGGCAAATCTGACCATGGCTTGCTGTACACGCTACCACTCAAAATTGCGTGCTTAAGTTTACTGACACTAGTTATTTATTGTTTTTATAACAGTCAATCACTTTTCACAGCTGCTTGCTATCATTGGAGAACACAGATCAGTGATTGTGGTGATGACATTTGTGGAGCAGTTGTTAATGTTAGACCTCGGCAGGATAAA

mRNA sequence

GTATACTACAATATCCATCATCCAACCAAGTTGACATCCAGGGTAGATTTGATTTGTGCTGTTTTAAACATAAAACTGAGCATTAATTGTAGGATCCTGTTTGCGAGGGGAATGGACTGTAAACTTTCAAGGGGCAAATCTGACCATGGCTTGCTGTACACGCTACCACTCAAAATTGCTGATTGTGGTGATGACATTTGTGGAGCAGTTGTTAATGTTAGACCTCGGCAGGATAAA

Coding sequence (CDS)

GTATACTACAATATCCATCATCCAACCAAGTTGACATCCAGGGTAGATTTGATTTGTGCTGTTTTAAACATAAAACTGAGCATTAATTGTAGGATCCTGTTTGCGAGGGGAATGGACTGTAAACTTTCAAGGGGCAAATCTGACCATGGCTTGCTGTACACGCTACCACTCAAAATTGCTGATTGTGGTGATGACATTTGTGGAGCAGTTGTTAATGTTAGACCTCGGCAGGATAAA

Protein sequence

VYYNIHHPTKLTSRVDLICAVLNIKLSINCRILFARGMDCKLSRGKSDHGLLYTLPLKIADCGDDICGAVVNVRPRQDK

Homology

[Close]

BLAST of MC09g1081.1 vs. ExPASy Swiss-Prot
Match: P48599 (Eukaryotic translation initiation factor 4E-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0970400 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.2e-06
Identity = 34/83 (40.96%), Postives = 43/83 (51.81%), Query Frame = 0


Query: 1   VYYNIHHPTKLTSRVDLICAVLNIKLSINCRILFARG-MDCKLSRGKSDHGLLYTLPLKI 60
           +Y NIHHP+KL    D  C    I+      I    G       RGKSD   L+TL   I
Sbjct: 93  LYNNIHHPSKLVVGADFHCFKNKIEPKWEDPICANGGKWTFSCGRGKSDTMWLHTLLAMI 152

Query: 61  A---DCGDDICGAVVNVRPRQDK 80
               D GD+ICGAVV+VR +Q++
Sbjct: 153 GEQFDYGDEICGAVVSVRGKQER 175

[Close]

BLAST of MC09g1081.1 vs. ExPASy Swiss-Prot
Match: P29557 (Eukaryotic translation initiation factor 4E-1 OS=Triticum aestivum OX=4565 PE=1 SV=3)

HSP 1 Score: 49.3 bits (116), Expect = 2.3e-05
Identity = 33/83 (39.76%), Postives = 43/83 (51.81%), Query Frame = 0


Query: 1   VYYNIHHPTKLTSRVDLICAVLNIKLSINCRILFARG-MDCKLSRGKSDHGLLYTLPLKI 60
           +Y NIH+P+KL    D  C    I+      I    G       RGKSD   L+TL   I
Sbjct: 81  LYNNIHNPSKLNVGADFHCFKNKIEPKWEDPICANGGKWTISCGRGKSDTFWLHTLLAMI 140

Query: 61  A---DCGDDICGAVVNVRPRQDK 80
               D GD+ICGAVV+VR +Q++
Sbjct: 141 GEQFDFGDEICGAVVSVRQKQER 163

[Close]

BLAST of MC09g1081.1 vs. ExPASy Swiss-Prot
Match: O81481 (Eukaryotic translation initiation factor 4E-1 OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 4.0e-05
Identity = 33/83 (39.76%), Postives = 43/83 (51.81%), Query Frame = 0


Query: 1   VYYNIHHPTKLTSRVDLICAVLNIKLSINCRILFARG-MDCKLSRGKSDHGLLYTLPLKI 60
           +Y NI+HP+KL    D  C    I+      I    G       RGKSD   L+TL   I
Sbjct: 84  LYNNINHPSKLIVGADFHCFKNKIEPKWEDPICANGGKWTISCGRGKSDTFWLHTLLAMI 143

Query: 61  A---DCGDDICGAVVNVRPRQDK 80
               D GD+ICGAVV+VR +Q++
Sbjct: 144 GEQFDYGDEICGAVVSVRGKQER 166

[Close]

BLAST of MC09g1081.1 vs. ExPASy Swiss-Prot
Match: O23252 (Eukaryotic translation initiation factor 4E-1 OS=Arabidopsis thaliana OX=3702 GN=EIF4E1 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.5e-04
Identity = 31/83 (37.35%), Postives = 41/83 (49.40%), Query Frame = 0


Query: 1   VYYNIHHPTKLTSRVDLICAVLNIKLSINCRILFARG-MDCKLSRGKSDHGLLYTLPLKI 60
           +Y N+ HP+KL    D  C    I+      I    G       + KSD   LYTL   I
Sbjct: 101 LYNNMKHPSKLAHGADFYCFKHIIEPKWEDPICANGGKWTMTFPKEKSDKSWLYTLLALI 160

Query: 61  A---DCGDDICGAVVNVRPRQDK 80
               D GD+ICGAVVN+R +Q++
Sbjct: 161 GEQFDHGDEICGAVVNIRGKQER 183

[Close]

BLAST of MC09g1081.1 vs. NCBI nr
Match: XP_004147397.1 (eukaryotic translation initiation factor 4E-1 [Cucumis sativus] >ABY56085.1 eukaryotic initiation factor 4E [Cucumis sativus] >KGN65581.1 hypothetical protein Csa_020005 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 4.92e-14
Identity = 43/83 (51.81%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 1   VYYNIHHPTKLTSRVDLICAVLNIKLSINCRILFARGM-DCKLSRGKSDHGLLYTLPLKI 60
           VY NIHHP+KL  R DL C    I+      +  + G      SRGKSD+G LYTL   I
Sbjct: 101 VYNNIHHPSKLALRADLYCFKHKIEPKWEDPVCASGGKWTVNFSRGKSDNGWLYTLLAMI 160

Query: 61  A---DCGDDICGAVVNVRPRQDK 79
               DCGD+ICGAVVNVR  QDK
Sbjct: 161 GEQFDCGDEICGAVVNVRSGQDK 183

[Close]

BLAST of MC09g1081.1 vs. NCBI nr
Match: XP_022994876.1 (eukaryotic translation initiation factor 4E-1-like [Cucurbita maxima] >XP_023541524.1 eukaryotic translation initiation factor 4E-1-like [Cucurbita pepo subsp. pepo] >KAG6573340.1 hypothetical protein SDJN03_27227, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012504.1 hypothetical protein SDJN02_25256 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 73.9 bits (180), Expect = 9.65e-14
Identity = 43/83 (51.81%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 1   VYYNIHHPTKLTSRVDLICAVLNIKLSINCRILFARGM-DCKLSRGKSDHGLLYTLPLKI 60
           VY NIHHP+KL  R DL C   +I+      +    G      SRGKSD+G LYTL   I
Sbjct: 101 VYNNIHHPSKLALRADLYCFKHHIEPKWEDPVCANGGKWTVNFSRGKSDNGWLYTLLAMI 160

Query: 61  A---DCGDDICGAVVNVRPRQDK 79
               DCGD+ICGAVVNVR  QDK
Sbjct: 161 GEQFDCGDEICGAVVNVRSGQDK 183

[Close]

BLAST of MC09g1081.1 vs. NCBI nr
Match: XP_022954765.1 (eukaryotic translation initiation factor 4E-1-like [Cucurbita moschata])

HSP 1 Score: 73.9 bits (180), Expect = 9.65e-14
Identity = 43/83 (51.81%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 1   VYYNIHHPTKLTSRVDLICAVLNIKLSINCRILFARGM-DCKLSRGKSDHGLLYTLPLKI 60
           VY NIHHP+KL  R DL C   +I+      +    G      SRGKSD+G LYTL   I
Sbjct: 101 VYNNIHHPSKLALRADLYCFKHHIEPKWEDPVCANGGKWTVNFSRGKSDNGWLYTLLAMI 160

Query: 61  A---DCGDDICGAVVNVRPRQDK 79
               DCGD+ICGAVVNVR  QDK
Sbjct: 161 GEQFDCGDEICGAVVNVRSGQDK 183

[Close]

BLAST of MC09g1081.1 vs. NCBI nr
Match: XP_022139998.1 (eukaryotic translation initiation factor 4E-1 [Momordica charantia])

HSP 1 Score: 73.9 bits (180), Expect = 9.65e-14
Identity = 43/83 (51.81%), Postives = 48/83 (57.83%), Query Frame = 0


Query: 1   VYYNIHHPTKLTSRVDLICAVLNIKLSINCRILFARGM-DCKLSRGKSDHGLLYTLPLKI 60
           VY NIHHP+KL  R DL C    I+      +    G      SRGKSD+G LYTL   I
Sbjct: 101 VYNNIHHPSKLAXRADLYCFKHKIEPKWEDPVCANGGKWTVNFSRGKSDNGWLYTLLAMI 160

Query: 61  A---DCGDDICGAVVNVRPRQDK 79
               DCGD+ICGAVVNVR  QDK
Sbjct: 161 GEQFDCGDEICGAVVNVRSGQDK 183

[Close]

BLAST of MC09g1081.1 vs. NCBI nr
Match: AEK98516.1 (eukaryotic translation initiation factor 4E [Citrullus mucosospermus])

HSP 1 Score: 73.6 bits (179), Expect = 1.35e-13
Identity = 43/83 (51.81%), Postives = 48/83 (57.83%), Query Frame = 0


Query: 1   VYYNIHHPTKLTSRVDLICAVLNIKLSINCRILFARGM-DCKLSRGKSDHGLLYTLPLKI 60
           VY NIHHP+KL  R DL C    I+      +    G      SRGKSD+G LYTL   I
Sbjct: 101 VYNNIHHPSKLALRADLYCFKHKIEPKWEDPVCANGGKWTVNFSRGKSDNGWLYTLLAMI 160

Query: 61  A---DCGDDICGAVVNVRPRQDK 79
               DCGD+ICGAVVNVR  QDK
Sbjct: 161 GEQFDCGDEICGAVVNVRSGQDK 183

[Close]

BLAST of MC09g1081.1 vs. ExPASy TrEMBL
Match: B0F6T5 (mRNA cap-binding protein OS=Cucumis sativus OX=3659 GN=eIF4E PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.38e-14
Identity = 43/83 (51.81%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 1   VYYNIHHPTKLTSRVDLICAVLNIKLSINCRILFARGM-DCKLSRGKSDHGLLYTLPLKI 60
           VY NIHHP+KL  R DL C    I+      +  + G      SRGKSD+G LYTL   I
Sbjct: 101 VYNNIHHPSKLALRADLYCFKHKIEPKWEDPVCASGGKWTVNFSRGKSDNGWLYTLLAMI 160

Query: 61  A---DCGDDICGAVVNVRPRQDK 79
               DCGD+ICGAVVNVR  QDK
Sbjct: 161 GEQFDCGDEICGAVVNVRSGQDK 183

[Close]

BLAST of MC09g1081.1 vs. ExPASy TrEMBL
Match: A0A6J1K0I1 (mRNA cap-binding protein OS=Cucurbita maxima OX=3661 GN=LOC111490469 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.67e-14
Identity = 43/83 (51.81%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 1   VYYNIHHPTKLTSRVDLICAVLNIKLSINCRILFARGM-DCKLSRGKSDHGLLYTLPLKI 60
           VY NIHHP+KL  R DL C   +I+      +    G      SRGKSD+G LYTL   I
Sbjct: 101 VYNNIHHPSKLALRADLYCFKHHIEPKWEDPVCANGGKWTVNFSRGKSDNGWLYTLLAMI 160

Query: 61  A---DCGDDICGAVVNVRPRQDK 79
               DCGD+ICGAVVNVR  QDK
Sbjct: 161 GEQFDCGDEICGAVVNVRSGQDK 183

[Close]

BLAST of MC09g1081.1 vs. ExPASy TrEMBL
Match: A0A6J1CH05 (mRNA cap-binding protein OS=Momordica charantia OX=3673 GN=LOC111010768 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.67e-14
Identity = 43/83 (51.81%), Postives = 48/83 (57.83%), Query Frame = 0


Query: 1   VYYNIHHPTKLTSRVDLICAVLNIKLSINCRILFARGM-DCKLSRGKSDHGLLYTLPLKI 60
           VY NIHHP+KL  R DL C    I+      +    G      SRGKSD+G LYTL   I
Sbjct: 101 VYNNIHHPSKLAXRADLYCFKHKIEPKWEDPVCANGGKWTVNFSRGKSDNGWLYTLLAMI 160

Query: 61  A---DCGDDICGAVVNVRPRQDK 79
               DCGD+ICGAVVNVR  QDK
Sbjct: 161 GEQFDCGDEICGAVVNVRSGQDK 183

[Close]

BLAST of MC09g1081.1 vs. ExPASy TrEMBL
Match: A0A6J1GTC0 (mRNA cap-binding protein OS=Cucurbita moschata OX=3662 GN=LOC111456920 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.67e-14
Identity = 43/83 (51.81%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 1   VYYNIHHPTKLTSRVDLICAVLNIKLSINCRILFARGM-DCKLSRGKSDHGLLYTLPLKI 60
           VY NIHHP+KL  R DL C   +I+      +    G      SRGKSD+G LYTL   I
Sbjct: 101 VYNNIHHPSKLALRADLYCFKHHIEPKWEDPVCANGGKWTVNFSRGKSDNGWLYTLLAMI 160

Query: 61  A---DCGDDICGAVVNVRPRQDK 79
               DCGD+ICGAVVNVR  QDK
Sbjct: 161 GEQFDCGDEICGAVVNVRSGQDK 183

[Close]

BLAST of MC09g1081.1 vs. ExPASy TrEMBL
Match: C7SG34 (mRNA cap-binding protein OS=Citrullus lanatus OX=3654 GN=eIF4E PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.55e-14
Identity = 43/83 (51.81%), Postives = 48/83 (57.83%), Query Frame = 0


Query: 1   VYYNIHHPTKLTSRVDLICAVLNIKLSINCRILFARGM-DCKLSRGKSDHGLLYTLPLKI 60
           VY NIHHP+KL  R DL C    I+      +    G      SRGKSD+G LYTL   I
Sbjct: 101 VYNNIHHPSKLALRADLYCFKHKIEPKWEDPVCANGGKWTVNFSRGKSDNGWLYTLLAMI 160

Query: 61  A---DCGDDICGAVVNVRPRQDK 79
               DCGD+ICGAVVNVR  QDK
Sbjct: 161 GEQFDCGDEICGAVVNVRSGQDK 183

[Close]

BLAST of MC09g1081.1 vs. TAIR 10
Match: AT4G18040.1 (eukaryotic translation initiation factor 4E )

HSP 1 Score: 46.6 bits (109), Expect = 1.1e-05
Identity = 31/83 (37.35%), Postives = 41/83 (49.40%), Query Frame = 0


Query: 1   VYYNIHHPTKLTSRVDLICAVLNIKLSINCRILFARG-MDCKLSRGKSDHGLLYTLPLKI 60
           +Y N+ HP+KL    D  C    I+      I    G       + KSD   LYTL   I
Sbjct: 101 LYNNMKHPSKLAHGADFYCFKHIIEPKWEDPICANGGKWTMTFPKEKSDKSWLYTLLALI 160

Query: 61  A---DCGDDICGAVVNVRPRQDK 80
               D GD+ICGAVVN+R +Q++
Sbjct: 161 GEQFDHGDEICGAVVNIRGKQER 183

The following BLAST results are available for this feature:

BLAST of MC09g1081.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P48599	6.2e-06	40.96	Eukaryotic translation initiation factor 4E-1 OS=Oryza sativa subsp. japonica OX...	[more]
P29557	2.3e-05	39.76	Eukaryotic translation initiation factor 4E-1 OS=Triticum aestivum OX=4565 PE=1 ...	[more]
O81481	4.0e-05	39.76	Eukaryotic translation initiation factor 4E-1 OS=Zea mays OX=4577 PE=2 SV=1	[more]
O23252	1.5e-04	37.35	Eukaryotic translation initiation factor 4E-1 OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of MC09g1081.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147397.1	4.92e-14	51.81	eukaryotic translation initiation factor 4E-1 [Cucumis sativus] >ABY56085.1 euka...	[more]
XP_022994876.1	9.65e-14	51.81	eukaryotic translation initiation factor 4E-1-like [Cucurbita maxima] >XP_023541...	[more]
XP_022954765.1	9.65e-14	51.81	eukaryotic translation initiation factor 4E-1-like [Cucurbita moschata]	[more]
XP_022139998.1	9.65e-14	51.81	eukaryotic translation initiation factor 4E-1 [Momordica charantia]	[more]
AEK98516.1	1.35e-13	51.81	eukaryotic translation initiation factor 4E [Citrullus mucosospermus]	[more]

BLAST of MC09g1081.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
B0F6T5	2.38e-14	51.81	mRNA cap-binding protein OS=Cucumis sativus OX=3659 GN=eIF4E PE=3 SV=1	[more]
A0A6J1K0I1	4.67e-14	51.81	mRNA cap-binding protein OS=Cucurbita maxima OX=3661 GN=LOC111490469 PE=3 SV=1	[more]
A0A6J1CH05	4.67e-14	51.81	mRNA cap-binding protein OS=Momordica charantia OX=3673 GN=LOC111010768 PE=3 SV=...	[more]
A0A6J1GTC0	4.67e-14	51.81	mRNA cap-binding protein OS=Cucurbita moschata OX=3662 GN=LOC111456920 PE=3 SV=1	[more]
C7SG34	6.55e-14	51.81	mRNA cap-binding protein OS=Citrullus lanatus OX=3654 GN=eIF4E PE=2 SV=1	[more]

BLAST of MC09g1081.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G18040.1	1.1e-05	37.35	eukaryotic translation initiation factor 4E	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC09g1081	MC09g1081	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC09g1081.1-cds	MC09g1081.1-cds-MC09:16666021..16666199	CDS
MC09g1081.1-cds	MC09g1081.1-cds-MC09:16666293..16666350	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC09g1081.1	MC09g1081.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051607	defense response to virus
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005622	intracellular anatomical structure
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003743	translation initiation factor activity