MC08g_new0512.1 (mRNA) Bitter gourd (Dali-11) v1

Overview
NameMC08g_new0512.1
TypemRNA
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC08: 26726018 .. 26726359 (-)
Sequence length342
RNA-Seq ExpressionMC08g_new0512.1
SyntenyMC08g_new0512.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACATTCTTCAATCACGGGAGCTGCGATGGCAGTGGCAGTTCTGATGATGATGCTGAGCACAAGCCACTCTGCATCTCTGACTTCTTCGAATTTCCACAACGAGACCACCGTCGGATCGATATGGTGCGGTGGCCGGGCCGAGGAATGCCTGGCCGGAGAATACGAATTGGACATTCAGATGGCAATTTCATACCCTCCGAAATACGCTTCTTCACGGGCCGTAAAGCCGCAGAAACCTATATGCGATCGCCCAAATTCACCGTATGACTGTCTTGGCCCGCCCAACCCGGGACCTGGTTGTAGACGCCGCAACATCTATGACCGCACAATCTGTTAG

mRNA sequence

ATGGGACATTCTTCAATCACGGGAGCTGCGATGGCAGTGGCAGTTCTGATGATGATGCTGAGCACAAGCCACTCTGCATCTCTGACTTCTTCGAATTTCCACAACGAGACCACCGTCGGATCGATATGGTGCGGTGGCCGGGCCGAGGAATGCCTGGCCGGAGAATACGAATTGGACATTCAGATGGCAATTTCATACCCTCCGAAATACGCTTCTTCACGGGCCGTAAAGCCGCAGAAACCTATATGCGATCGCCCAAATTCACCGTATGACTGTCTTGGCCCGCCCAACCCGGGACCTGGTTGTAGACGCCGCAACATCTATGACCGCACAATCTGTTAG

Coding sequence (CDS)

ATGGGACATTCTTCAATCACGGGAGCTGCGATGGCAGTGGCAGTTCTGATGATGATGCTGAGCACAAGCCACTCTGCATCTCTGACTTCTTCGAATTTCCACAACGAGACCACCGTCGGATCGATATGGTGCGGTGGCCGGGCCGAGGAATGCCTGGCCGGAGAATACGAATTGGACATTCAGATGGCAATTTCATACCCTCCGAAATACGCTTCTTCACGGGCCGTAAAGCCGCAGAAACCTATATGCGATCGCCCAAATTCACCGTATGACTGTCTTGGCCCGCCCAACCCGGGACCTGGTTGTAGACGCCGCAACATCTATGACCGCACAATCTGTTAG

Protein sequence

MGHSSITGAAMAVAVLMMMLSTSHSASLTSSNFHNETTVGSIWCGGRAEECLAGEYELDIQMAISYPPKYASSRAVKPQKPICDRPNSPYDCLGPPNPGPGCRRRNIYDRTIC
Homology
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BLAST of MC08g_new0512.1 vs. NCBI nr
Match: KAG6607071.1 (hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 54.3 bits (129), Expect = 1.45e-06
Identity = 42/124 (33.87%), Postives = 58/124 (46.77%), Query Frame = 0 

Query: 1   MGHSSITG-----AAMAVAVLMMMLSTSHSASLTSSNFHNETTVG--SIWCGGRAEECLA 60
           MGHSS +G     AAM V +L++  S  + AS T S++ N T     S+WC GR EEC+ 
Sbjct: 1   MGHSSNSGGVMAAAAMGVFILVLSGSDCNVASPTPSSYGNNTVAAAASMWCDGRVEECVT 60

Query: 61  GEYELDIQMAISYPP------KYASSRAVKPQKPICDRPNSPYDCLGPPNPGPGCRRRNI 111
            E +     A ++P       KY S  +V   K +C+RP+    C  P    P       
Sbjct: 61  REGD----SASAFPSLQTSTRKYISPSSVNSNKAVCERPDEYRSCFNPRRSNPNPNNCGR 120

The following BLAST results are available for this feature:
BLAST of MC08g_new0512.1 vs.
Match NameE-valueIdentityDescription
BLAST of MC08g_new0512.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6607071.11.45e-0633.87hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of MC08g_new0512.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MC08g_new0512.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MC08g_new0512MC08g_new0512gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MC08g_new0512.1-cdsMC08g_new0512.1-cds-MC08:26726018..26726359CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MC08g_new0512.1MC08g_new0512.1-proteinpolypeptide