MC08g1906.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC08g1906.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC08: 27279749 .. 27280246 (+)
Sequence length	498
RNA-Seq Expression	MC08g1906.1
Synteny	MC08g1906.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTACCAAACGAGGAGCACTTATTGACGCCTTCGAGGGTAACGACGGCAGTGAGGATAAAGACAAAAGGCAAGAGAAATGCGAGGAGGAGGAAGGTGTGGAAAATGGTCCGGTAAGAGATATGGCGAGCTGCAACCTTGATCTTCATGAAATCAATAAAGCCATTATTGGTCGAGATCGTGATGCTTCTCATGCTAGGCGAGAAGTGAAGCTGCATCATCCTCTATGCAGCTTCCTTCAGGTAGTCATCGTCGGCCACGACAACACGACAACAACAGCAACCCTAGCACAGCTTCCCCACCATCCCTACCACCATCCATGGCGGACAAATACCACCATGAAATCTAAACCCGCATCTACCAAACACACAATGACTTTCAGATTGAGATCAAGAAACAAAAAGATTAAAAAAAACAGAAGAGATAAAAATCCCTCCCGAGATTGCCTTGAATCCAAATGCGTCGCCCAGGCAAAACTCGATCAAGAATTCCGAATCGGA

mRNA sequence

AGTACCAAACGAGGAGCACTTATTGACGCCTTCGAGGGTAACGACGGCAGTGAGGATAAAGACAAAAGGCAAGAGAAATGCGAGGAGGAGGAAGGTGTGGAAAATGGTCCGGTAAGAGATATGGCGAGCTGCAACCTTGATCTTCATGAAATCAATAAAGCCATTATTGGTCGAGATCGTGATGCTTCTCATGCTAGGCGAGAAGTGAAGCTGCATCATCCTCTATGCAGCTTCCTTCAGGTAGTCATCGTCGGCCACGACAACACGACAACAACAGCAACCCTAGCACAGCTTCCCCACCATCCCTACCACCATCCATGGCGGACAAATACCACCATGAAATCTAAACCCGCATCTACCAAACACACAATGACTTTCAGATTGAGATCAAGAAACAAAAAGATTAAAAAAAACAGAAGAGATAAAAATCCCTCCCGAGATTGCCTTGAATCCAAATGCGTCGCCCAGGCAAAACTCGATCAAGAATTCCGAATCGGA

Coding sequence (CDS)

AGTACCAAACGAGGAGCACTTATTGACGCCTTCGAGGGTAACGACGGCAGTGAGGATAAAGACAAAAGGCAAGAGAAATGCGAGGAGGAGGAAGGTGTGGAAAATGGTCCGGTAAGAGATATGGCGAGCTGCAACCTTGATCTTCATGAAATCAATAAAGCCATTATTGGTCGAGATCGTGATGCTTCTCATGCTAGGCGAGAAGTGAAGCTGCATCATCCTCTATGCAGCTTCCTTCAGGTAGTCATCGTCGGCCACGACAACACGACAACAACAGCAACCCTAGCACAGCTTCCCCACCATCCCTACCACCATCCATGGCGGACAAATACCACCATGAAATCTAAACCCGCATCTACCAAACACACAATGACTTTCAGATTGAGATCAAGAAACAAAAAGATTAAAAAAAACAGAAGAGATAAAAATCCCTCCCGAGATTGCCTTGAATCCAAATGCGTCGCCCAGGCAAAACTCGATCAAGAATTCCGAATCGGA

Protein sequence

STKRGALIDAFEGNDGSEDKDKRQEKCEEEEGVENGPVRDMASCNLDLHEINKAIIGRDRDASHARREVKLHHPLCSFLQVVIVGHDNTTTTATLAQLPHHPYHHPWRTNTTMKSKPASTKHTMTFRLRSRNKKIKKNRRDKNPSRDCLESKCVAQAKLDQEFRIG

Homology

[Close]

BLAST of MC08g1906.1 vs. NCBI nr
Match: RWV88847.1 (hypothetical protein GW17_00049039 [Ensete ventricosum])

HSP 1 Score: 85.9 bits (211), Expect = 2.87e-18
Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 2   TKRGALIDAFEGNDGSEDKDKRQEKCEEEEGVENGPVRDMASCNLDLHEINKAIIGRDRD 61
           T+ GAL+DA EG++G ED+D+ QE+ E+E+GVE GPV D+A  +L LH++ K I  R RD
Sbjct: 33  TEGGALVDALEGDNGGEDEDEWQEEGEDEDGVEQGPVGDVAGGDLHLHQVEKPIAARYRD 92

Query: 62  ASHARREVKLHHP 74
           ASHARRE  LH P
Sbjct: 93  ASHARRETNLHRP 105

[Close]

BLAST of MC08g1906.1 vs. NCBI nr
Match: RRT40574.1 (hypothetical protein B296_00032129 [Ensete ventricosum])

HSP 1 Score: 85.9 bits (211), Expect = 3.29e-18
Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 2   TKRGALIDAFEGNDGSEDKDKRQEKCEEEEGVENGPVRDMASCNLDLHEINKAIIGRDRD 61
           T+ GAL+DA EG++G ED+D+ QE+ E+E+GVE GPV D+A  +L LH++ K I  R RD
Sbjct: 38  TEGGALVDALEGDNGGEDEDEWQEEGEDEDGVEQGPVGDVAGGDLHLHQVEKPIAARYRD 97

Query: 62  ASHARREVKLHHP 74
           ASHARRE  LH P
Sbjct: 98  ASHARRETNLHRP 110

[Close]

BLAST of MC08g1906.1 vs. NCBI nr
Match: RWW62108.1 (hypothetical protein BHE74_00030780 [Ensete ventricosum] >RZS10942.1 hypothetical protein BHM03_00042253 [Ensete ventricosum])

HSP 1 Score: 85.9 bits (211), Expect = 1.61e-17
Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 2   TKRGALIDAFEGNDGSEDKDKRQEKCEEEEGVENGPVRDMASCNLDLHEINKAIIGRDRD 61
           T+ GAL+DA EG++G ED+D+ QE+ E+E+GVE GPV D+A  +L LH++ K I  R RD
Sbjct: 33  TEGGALVDALEGDNGGEDEDEWQEEGEDEDGVEQGPVGDVAGGDLHLHQVEKPIAARYRD 92

Query: 62  ASHARREVKLHHP 74
           ASHARRE  LH P
Sbjct: 93  ASHARRETNLHRP 105

[Close]

BLAST of MC08g1906.1 vs. NCBI nr
Match: RRT37498.1 (hypothetical protein B296_00047192, partial [Ensete ventricosum] >RZS21319.1 hypothetical protein BHM03_00053946, partial [Ensete ventricosum])

HSP 1 Score: 74.7 bits (182), Expect = 7.99e-13
Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 0


Query: 2   TKRGALIDAFEGNDGSEDKDKRQEKCEEEEGVENGPVRDMASCNLDLHEINKAIIGRDRD 61
           T+  AL+DA EG+DG EDKDK Q++ E+E+GVE GPV ++A  +L LH++ ++I     D
Sbjct: 30  TEGRALVDALEGDDGGEDKDKGQQEGEDEDGVEEGPVGEVAGGDLHLHQVKESIAAGYCD 89

Query: 62  ASHARREVKLH 72
           ASHARRE  LH
Sbjct: 90  ASHARREPYLH 100

[Close]

BLAST of MC08g1906.1 vs. NCBI nr
Match: RWW45914.1 (hypothetical protein BHE74_00048203, partial [Ensete ventricosum])

HSP 1 Score: 74.7 bits (182), Expect = 7.99e-13
Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 0


Query: 2   TKRGALIDAFEGNDGSEDKDKRQEKCEEEEGVENGPVRDMASCNLDLHEINKAIIGRDRD 61
           T+  AL+DA EG+DG EDKDK Q++ E+E+GVE GPV ++A  +L LH++ ++I     D
Sbjct: 30  TEGRALVDALEGDDGGEDKDKGQQEGEDEDGVEEGPVGEVAGGDLHLHQVKESIAAGYCD 89

Query: 62  ASHARREVKLH 72
           ASHARRE  LH
Sbjct: 90  ASHARREPYLH 100

[Close]

BLAST of MC08g1906.1 vs. ExPASy TrEMBL
Match: A0A444CSH1 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00049039 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.39e-18
Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 2   TKRGALIDAFEGNDGSEDKDKRQEKCEEEEGVENGPVRDMASCNLDLHEINKAIIGRDRD 61
           T+ GAL+DA EG++G ED+D+ QE+ E+E+GVE GPV D+A  +L LH++ K I  R RD
Sbjct: 33  TEGGALVDALEGDNGGEDEDEWQEEGEDEDGVEQGPVGDVAGGDLHLHQVEKPIAARYRD 92

Query: 62  ASHARREVKLHHP 74
           ASHARRE  LH P
Sbjct: 93  ASHARRETNLHRP 105

[Close]

BLAST of MC08g1906.1 vs. ExPASy TrEMBL
Match: A0A426XM74 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00032129 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.59e-18
Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 2   TKRGALIDAFEGNDGSEDKDKRQEKCEEEEGVENGPVRDMASCNLDLHEINKAIIGRDRD 61
           T+ GAL+DA EG++G ED+D+ QE+ E+E+GVE GPV D+A  +L LH++ K I  R RD
Sbjct: 38  TEGGALVDALEGDNGGEDEDEWQEEGEDEDGVEQGPVGDVAGGDLHLHQVEKPIAARYRD 97

Query: 62  ASHARREVKLHHP 74
           ASHARRE  LH P
Sbjct: 98  ASHARRETNLHRP 110

[Close]

BLAST of MC08g1906.1 vs. ExPASy TrEMBL
Match: A0A426XDG2 (Uncharacterized protein (Fragment) OS=Ensete ventricosum OX=4639 GN=B296_00047192 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.87e-13
Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 0


Query: 2   TKRGALIDAFEGNDGSEDKDKRQEKCEEEEGVENGPVRDMASCNLDLHEINKAIIGRDRD 61
           T+  AL+DA EG+DG EDKDK Q++ E+E+GVE GPV ++A  +L LH++ ++I     D
Sbjct: 30  TEGRALVDALEGDDGGEDKDKGQQEGEDEDGVEEGPVGEVAGGDLHLHQVKESIAAGYCD 89

Query: 62  ASHARREVKLH 72
           ASHARRE  LH
Sbjct: 90  ASHARREPYLH 100

[Close]

BLAST of MC08g1906.1 vs. ExPASy TrEMBL
Match: A0A444G3K2 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00006001 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.17e-12
Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 0


Query: 2   TKRGALIDAFEGNDGSEDKDKRQEKCEEEEGVENGPVRDMASCNLDLHEINKAIIGRDRD 61
           T+  AL+DA EG+DG EDKDK Q++ E+E+GVE GPV ++A  +L LH++ ++I     D
Sbjct: 30  TEGRALVDALEGDDGGEDKDKGQQEGEDEDGVEEGPVGEVAGGDLHLHQVKESIAAGYCD 89

Query: 62  ASHARREVKLH 72
           ASHARRE  LH
Sbjct: 90  ASHARREPYLH 100

The following BLAST results are available for this feature:

BLAST of MC08g1906.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC08g1906.1 vs. NCBI nr


Match Name	E-value	Identity	Description
RWV88847.1	2.87e-18	57.53	hypothetical protein GW17_00049039 [Ensete ventricosum]	[more]
RRT40574.1	3.29e-18	57.53	hypothetical protein B296_00032129 [Ensete ventricosum]	[more]
RWW62108.1	1.61e-17	57.53	hypothetical protein BHE74_00030780 [Ensete ventricosum] >RZS10942.1 hypothetica...	[more]
RRT37498.1	7.99e-13	53.52	hypothetical protein B296_00047192, partial [Ensete ventricosum] >RZS21319.1 hyp...	[more]
RWW45914.1	7.99e-13	53.52	hypothetical protein BHE74_00048203, partial [Ensete ventricosum]	[more]

BLAST of MC08g1906.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A444CSH1	1.39e-18	57.53	Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00049039 PE=4 SV=1	[more]
A0A426XM74	1.59e-18	57.53	Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00032129 PE=4 SV=1	[more]
A0A426XDG2	3.87e-13	53.52	Uncharacterized protein (Fragment) OS=Ensete ventricosum OX=4639 GN=B296_0004719...	[more]
A0A444G3K2	2.17e-12	53.52	Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00006001 PE=4 SV=1	[more]

BLAST of MC08g1906.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..36

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC08g1906	MC08g1906	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC08g1906.1-cds	MC08g1906.1-cds-MC08:27279749..27280246	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC08g1906.1	MC08g1906.1-protein	polypeptide