MC08g1831.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC08g1831.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC08: 26482098 .. 26482400 (+)
Sequence length	303
RNA-Seq Expression	MC08g1831.1
Synteny	MC08g1831.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCCTCATGAGCTCCAGGAACTGCGCCGGATTGAAGGGCGCGAGATCGCAGGCGTCGGGGCGCCACCGCCAGCGGAGGAATCCGGCGTCGGGGCGGCCGTACTTGAGGCAGTTCTGGTGCTCGTGGATGGCCCAGCAGGAGCGGTTGTCGTAGGGCGGGGCGGCGGAGGGGTTAGGGTTGGGGATCCAGTCGCCGGCGGCGAGATCGCAGTGGGGGGCGGAGAGGATGGGGATGTCGGTGGAGAAGATTTGGGGGCGGAAGGAGGCGGCGGCGGCGGCGGCGGGGGACTCGAGGGAGGTCTT

mRNA sequence

ATTCCTCATGAGCTCCAGGAACTGCGCCGGATTGAAGGGCGCGAGATCGCAGGCGTCGGGGCGCCACCGCCAGCGGAGGAATCCGGCGTCGGGGCGGCCGTACTTGAGGCAGTTCTGGTGCTCGTGGATGGCCCAGCAGGAGCGGTTGTCGTAGGGCGGGGCGGCGGAGGGGTTAGGGTTGGGGATCCAGTCGCCGGCGGCGAGATCGCAGTGGGGGGCGGAGAGGATGGGGATGTCGGTGGAGAAGATTTGGGGGCGGAAGGAGGCGGCGGCGGCGGCGGCGGGGGACTCGAGGGAGGTCTT

Coding sequence (CDS)

ATTCCTCATGAGCTCCAGGAACTGCGCCGGATTGAAGGGCGCGAGATCGCAGGCGTCGGGGCGCCACCGCCAGCGGAGGAATCCGGCGTCGGGGCGGCCGTACTTGAGGCAGTTCTGGTGCTCGTGGATGGCCCAGCAGGAGCGGTTGTCGTAGGGCGGGGCGGCGGAGGGGTTAGGGTTGGGGATCCAGTCGCCGGCGGCGAGATCGCAGTGGGGGGCGGAGAGGATGGGGATGTCGGTGGAGAAGATTTGGGGGCGGAAGGAGGCGGCGGCGGCGGCGGCGGGGGACTCGAGGGAGGTCTT

Protein sequence

IPHELQELRRIEGREIAGVGAPPPAEESGVGAAVLEAVLVLVDGPAGAVVVGRGGGGVRVGDPVAGGEIAVGGGEDGDVGGEDLGAEGGGGGGGGGLEGGL

Homology

[Close]

BLAST of MC08g1831.1 vs. NCBI nr
Match: RWV87760.1 (hypothetical protein GW17_00050212 [Ensete ventricosum])

HSP 1 Score: 54.3 bits (129), Expect = 3.06e-06
Identity = 37/68 (54.41%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 4   ELQELRRIEGREIAGVGAPPPAEESGVGAAVLEAVLVLVDGPAGAVVVGRGGGGVRVGDP 63
           E++E   +E RE+A +G PPP EE  V  AVL AVLVL+DG AG V V    GGV V +P
Sbjct: 63  EVEEPGGVEAREVAAIGLPPPLEEVQVRPAVLHAVLVLLDGEAGLVGVV---GGVGVPNP 122

Query: 64  VAGGEIAV 71
            A G+IAV
Sbjct: 123 FALGQIAV 127

[Close]

BLAST of MC08g1831.1 vs. ExPASy TrEMBL
Match: A0A444CPF4 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00050212 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.48e-06
Identity = 37/68 (54.41%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 4   ELQELRRIEGREIAGVGAPPPAEESGVGAAVLEAVLVLVDGPAGAVVVGRGGGGVRVGDP 63
           E++E   +E RE+A +G PPP EE  V  AVL AVLVL+DG AG V V    GGV V +P
Sbjct: 63  EVEEPGGVEAREVAAIGLPPPLEEVQVRPAVLHAVLVLLDGEAGLVGVV---GGVGVPNP 122

Query: 64  VAGGEIAV 71
            A G+IAV
Sbjct: 123 FALGQIAV 127

[Close]

BLAST of MC08g1831.1 vs. ExPASy TrEMBL
Match: A0A0A9L022 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.73e-04
Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 4   ELQELRRIEGREIAGVGAPPPAEESGVGAAVLEAVLVLVDGPAG-AVVVGRGGGGVRVGD 63
           EL+EL+ +E R++A   APPP EE  VGA VLEAVLVL+D  A   VVVGR    + V  
Sbjct: 72  ELEELQWVEARQLAPGRAPPPLEEPQVGAPVLEAVLVLLDQRARLVVVVGR----LGVRH 131

Query: 64  PVAGGEIAV 71
           P+A  ++A+
Sbjct: 132 PLAAEDVAI 136

The following BLAST results are available for this feature:

BLAST of MC08g1831.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC08g1831.1 vs. NCBI nr


Match Name	E-value	Identity	Description
RWV87760.1	3.06e-06	54.41	hypothetical protein GW17_00050212 [Ensete ventricosum]	[more]

BLAST of MC08g1831.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A444CPF4	1.48e-06	54.41	Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00050212 PE=4 SV=1	[more]
A0A0A9L022	1.73e-04	50.72	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]

BLAST of MC08g1831.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..101

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC08g1831	MC08g1831	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC08g1831.1-cds	MC08g1831.1-cds-MC08:26482098..26482400	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC08g1831.1	MC08g1831.1-protein	polypeptide