MC08g1805.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC08g1805.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	exosome complex exonuclease RRP44 homolog A-like
Location	MC08: 26194188 .. 26198037 (+)
Sequence length	1403
RNA-Seq Expression	MC08g1805.1
Synteny	MC08g1805.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5CDSpolypeptideutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTAATGTCTTGAGTACATTATTTTGGTTTATTATTTCTTTTGGTAAAAAAAGAAAAGAAAGGAAAACGAAAAGGGAAAAAGAAAAAAAAATTAAAAGAAACCAAAACCCTACCTTCCCTTTCTCCTTCTTCTTCTCTCCCTCCCTCTTGTTGCAGCCGCCCAGCCCACCACTTTTCCCACAGCATCCGAACGACGTTTCTCCTCCCTCGGATTGCGACGCACAACCCTTGTTACGATTTGAATAAACCCCACTCCAAGTTCAAAAAGCAAGCTCATCGCACAATTCAAGGAAGCAGCTACAAGTATTTCTGGCTGCTTATTTGCAAGCCTCACTGTTTACAAATTTGATTTTCAGGTACTCGGTCTTCCGGTTCTCGTTTTTAAATTCGTCATTGTTTGGTTCTCCAGCTTGTCCGATTGGTTTAAGGTATTGGGTTAGCGGTTTTGGCAATTTCAATTGGTTTTATATGTGATGGGTTCATTGAGTTGTAGACATTATGTTGATTTTCGTACTTTTTCTGCCGCAATTTCCTGTTGTTTTAGTGATTCGCCAATCTTTTAGGTTGTTTTTTGCTTTTGGGTAATTGCCATACTCCGAAAAGAAAATTAATGAGTTGTCTCATTTAAGAATCTGACTCAAATTCATGATTGTTCTTGTAGCTTTCAGTGTGTAGTGGAGTTTATCAAGTAGGCCCTGAGGTCCTTCATCTTAACGAAGGGGGTAGTTCAGATATAGGGTTCTGCGAGTAGCACGGAAAATAAGAGTTGAAGCTGCTGTCAGTAAACATGTTGCATAACAAGTCGTTTGTGAAAAAAACGAAGTCTGTGAAGGTGATGAAGGTCGGTAAATCACTAATCTTGGGTCTAATTTTATACATCTCATTACTTTCCTTTTTTTTTAATCGTTACTTTTTTTTTAAGCTTGAGAATCCGGCTATTGATGACGTGGTTATGCTATCAGTTGTGCTGGACGAGATTAAGAACAAGAACTTGTCTATTTACAATAGAGTTAGAGCTCTCTGCAGTAATCCACTGAGGAGATTCTTTGTCTTCTCCAACAAGCATCACAAGTAGGTTCTTGATTACCCTTTCACTAATGCTGCCTTTGACAGTCATCTACGATTGATATTGTACTGTAAATTTAAAACATTTATCAATGTTATTTATTTATTTTTTGTTTTGACAATAGTATAAATTCACGCTTGGTTGGAGTTTGAAAATCTATCCTCTCTCATTATGTTTCTGAGTTACACGGGAATTCAGGATATTGCTATTTGCTAATATCAATCTATAATTAGAATCTGTGAAGTGTGAAGCCAATTAAGCAGTTGATTGTTGCTGCCTTTGGTTTGAACTTCAAACCTGTACGTAAATTGAGCAAGTGATTTTATGTACCTTGTGTAAAAAATTGAAAGAAACAACCAATTACAAGAGCTTTTCTAGGGATGAGGCTGATTATGGTAATGGTTGAATGAGATGCGATGTTAAGGTTTTGGATAGAAAATGAACCCTCAACTCTAATACGCAGTGTTCCACTATAAATTTTTTTGTAATATCAGATGGCATGAAGTATTAAAATCTATATGAAAAAACATGCACTTTCATGGTGGATATATTTTTGAGCTTCCTTTAAATCATTGTTTTGGCAGGGATACATATGTTAAGGAGATGAGTGGAGAAAGTAAAAATGATCGAAATGATAGAGGTATTCTCTTGAAATTACGAGATCTGATGCTTTAGTGTTCATATGCTGAAGCTAAACTACATATATTTTTATTCATCCTCTCTTTACCACTTATACAATATTTACCTATGATACATATTCAAATACGTCCATCCATACTTACTTTCTAATTCATTGTTTACTGTAACTGTCAATCTATTTTGCATGTTTTCATAACTTTTTTTCCCCTAAAAGTTAATAACTGTGGGAAATACTTACTTAAATGATGTTGACTGTTATCTCCAACATTGTGATTCAGCAATTCGTGTGGCTACTCAGTGGTATCAGAAACACCTTGGTGGTGCAACTCGTGTTCTAGTCGTAATAAATGACAGAGAGAATAAGAGGAAGGCTATTGAAGAGGGAATTTATGCAGAGACAAGTATGTGTTGAGTGTTCTTTTGATGTCTTTATGTGTTGAGTGCTTGTAATGATTATACTCTTTTTTTTCCTCGTGTCATATACTTAGCTCACTTGGTTCTGAGAGTTTGTCTGTTTTCCCTAAGTTTTGGTTTTTATTTTGTCCACAGAGACAGATTTGGGGTTGGATTAATTCCAAGACTTCTACCACTAGGAGAGATATGCGTGGAGTTGTAAGAGCTGAAATGTTTGGTCAGTTGACAAGTGGCCTGGAGAGTGCTTAAAACAAGCTCAAAGAAGAAGGTCTGAATATCTTTATTCCTTTCAATCTGTTGCCTTATTTTAAGTTTGGTTTATATAGCTATGCTATACTTCAATGATCCAGAGAATAGCTTAATAGATGTTTTGGATTTGGTAAGAGAAATCAAATGATAATTAAATGACCTGTATATAATTCTCATACTGGAAGTACCCGAGTTGGTAAATGATAACTAACTTTAACTATTTGGCATTTAGAACAAAAGTATCCGTGCATCACGTCCCTTGCATGAGGTTATAATGACTGCTATCTCAATTTAGTAATGTGGTCTACCTGTAAGTATTTCCATGCTTATGTGTTATTTTGCAACTGATGGATTGCGGGGGGCTGTGGAGTGGGCTGGGGGGGGGGGGGCATTTTCCTCGTGTCTTTGCCGCTTCCCCTATTCCTCTTGAAATTCTTTGAGATTGGTTCTTGCTGGGTCGAATGTCCTCATCACTAGGCTCACAAGTTTTTAAGGTAGGGTTTATAAAATTTCAAGCAACATTTGTGAATCTTCATGAAACAAAAATTTATGTCAAAGTCTAACGAAGAAGCGGCTTGACCATGAGCTTGAGCTTGACCCAGTCCAATAAAATCCATCATTTCATCACAAGGCAGCGTTTGTTTTGATTGTTCTTCCTCCGACTCCTCCACATGATCCATTTCTCATCAATCTTTCGAAAACCAAGCTTTCAAACGTGGCACAGACGTTTCATTTTCATAATTTTTACCAAGCCCGGGCACCCCTCTTTTCCCTTGGACTCAGTCCCCCGTTTGTTTTGATTTTGGTTTTGAAATGGGTGAGGTTGAGAATCGGAATATCCATCGGTTTAGGAATCGATTGCGGGTTTATGGGTTGGTGGTAGTGAGTTTGCTGTTTCAGAGTTTTCATTTGTGTTGGTCGCTGGATGAAGAAGGTAATTGATCTTCGTGAATTCTTCGGAGGCTTTAGTTTAAGGTTTTTAATCTTCTGTTCTGATGAAATCAGAGGTGATATTTGAAGGGGTTTTTGAATTGCTCTGTTCTATTTTGTAGGTTTGACTCTTCTCAAGTTCAGAGAGAGAGAGTTGTGAATGATCCATTTGGCGCTTTATCTAACTGGAATGATCACAAAGAAGATATTAATCCATGTTTTTGGTTAGGAGTTGAATGCTCGTATAGGAAAGTTGTAGTCCTGTATGTTCTTCACCTTTTTCATCTTCCTTTCTCCTGTTTTTGATTGTTGGGCCATTTTTTGTTGGGTTAGTAGTTACTTGGTATAGTTTGTTTATGTACAGGGTTGAGAAAAACCTTCGTTGATGTATATATAATTTACTATATGTATACACTTTAAATTTGTAGGTGGGTTGGTGTACTAATGGATATATATGTTTTTGTATGTAAAATATGTCACAATTGACAGGTACAGGTACAACTATGGAAAGCGGTTTTTAATTACATTTATAAATGTCAACAAAATAGGTT

mRNA sequence

GTTTAATGTCTTGAGTACATTATTTTGGTTTATTATTTCTTTTGGTAAAAAAAGAAAAGAAAGGAAAACGAAAAGGGAAAAAGAAAAAAAAATTAAAAGAAACCAAAACCCTACCTTCCCTTTCTCCTTCTTCTTCTCTCCCTCCCTCTTGTTGCAGCCGCCCAGCCCACCACTTTTCCCACAGCATCCGAACGACGTTTCTCCTCCCTCGGATTGCGACGCACAACCCTTGTTACGATTTGAATAAACCCCACTCCAAGTTCAAAAAGCAAGCTCATCGCACAATTCAAGGAAGCAGCTACAAGTATTTCTGGCTGCTTATTTGCAAGCCTCACTGTTTACAAATTTGATTTTCAGCTTTCAGTGTGTAGTGGAGTTTATCAAGTAGGCCCTGAGGTCCTTCATCTTAACGAAGGGGGTAGTTCAGATATAGGGTTCTGCGAGTAGCACGGAAAATAAGAGTTGAAGCTGCTGTCAGTAAACATGTTGCATAACAAGTCGTTTGTGAAAAAAACGAAGTCTGTGAAGGTGATGAAGCTTGAGAATCCGGCTATTGATGACGTGGTTATGCTATCAGTTGTGCTGGACGAGATTAAGAACAAGAACTTGTCTATTTACAATAGAGTTAGAGCTCTCTGCAGTAATCCACTGAGGAGATTCTTTGTCTTCTCCAACAAGCATCACAAGGATACATATGTTAAGGAGATGAGTGGAGAAACAATTCGTGTGGCTACTCAGTGGTATCAGAAACACCTTGGTGGTGCAACTCGTGTTCTAGTCGTAATAAATGACAGAGAGAATAAGAGGAAGGCTATTGAAGAGGGAATTTATGCAGAGACAAAGACAGATTTGGGGTTGGATTAATTCCAAGACTTCTACCACTAGGAGAGATATGCGTGGAGTTGTAAGAGCTGAAATGTTTGGTCAGTTGACAAGTGGCCTGGAGAGTGCTTAAAACAAGCTCAAAGAAGAAGGTTTGACTCTTCTCAAGTTCAGAGAGAGAGAGTTGTGAATGATCCATTTGGCGCTTTATCTAACTGGAATGATCACAAAGAAGATATTAATCCATGTTTTTGGTTAGGAGTTGAATGCTCGTATAGGAAAGTTGTAGTCCTGTATGTTCTTCACCTTTTTCATCTTCCTTTCTCCTGTTTTTGATTGTTGGGCCATTTTTTGTTGGGTTAGTAGTTACTTGGTATAGTTTGTTTATGTACAGGGTTGAGAAAAACCTTCGTTGATGTATATATAATTTACTATATGTATACACTTTAAATTTGTAGGTGGGTTGGTGTACTAATGGATATATATGTTTTTGTATGTAAAATATGTCACAATTGACAGGTACAGGTACAACTATGGAAAGCGGTTTTTAATTACATTTATAAATGTCAACAAAATAGGTT

Coding sequence (CDS)

ATGTTGCATAACAAGTCGTTTGTGAAAAAAACGAAGTCTGTGAAGGTGATGAAGCTTGAGAATCCGGCTATTGATGACGTGGTTATGCTATCAGTTGTGCTGGACGAGATTAAGAACAAGAACTTGTCTATTTACAATAGAGTTAGAGCTCTCTGCAGTAATCCACTGAGGAGATTCTTTGTCTTCTCCAACAAGCATCACAAGGATACATATGTTAAGGAGATGAGTGGAGAAACAATTCGTGTGGCTACTCAGTGGTATCAGAAACACCTTGGTGGTGCAACTCGTGTTCTAGTCGTAATAAATGACAGAGAGAATAAGAGGAAGGCTATTGAAGAGGGAATTTATGCAGAGACAAAGACAGATTTGGGGTTGGATTAA

Protein sequence

MLHNKSFVKKTKSVKVMKLENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTYVKEMSGETIRVATQWYQKHLGGATRVLVVINDRENKRKAIEEGIYAETKTDLGLD

Homology

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BLAST of MC08g1805.1 vs. ExPASy Swiss-Prot
Match: Q9SHL7 (Exosome complex exonuclease RRP44 homolog A OS=Arabidopsis thaliana OX=3702 GN=RRP44A PE=2 SV=2)

HSP 1 Score: 142.9 bits (359), Expect = 2.5e-33
Identity = 73/109 (66.97%), Postives = 85/109 (77.98%), Query Frame = 0


Query: 19  LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTYVKEMSGE 78
           LEN AID VV+LSVVLDE+KN+N S+YNR+R LCSNP R+F+VFSN  HKDTYV+ M  E
Sbjct: 66  LENKAIDTVVVLSVVLDEVKNRNRSVYNRIRLLCSNPARQFYVFSNHVHKDTYVQAMEKE 125

Query: 79  T--------IRVATQWYQKHLGGATRVLVVINDRENKRKAIEEGIYAET 120
           +        IRVAT WYQKHLG  ++VL+V NDRENKRKA EEGI AET
Sbjct: 126 SANDHNDRAIRVATLWYQKHLGDTSQVLLVTNDRENKRKATEEGISAET 174

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BLAST of MC08g1805.1 vs. ExPASy Swiss-Prot
Match: Q9Y2L1 (Exosome complex exonuclease RRP44 OS=Homo sapiens OX=9606 GN=DIS3 PE=1 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 2.0e-19
Identity = 48/114 (42.11%), Postives = 73/114 (64.04%), Query Frame = 0


Query: 19  LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTYVKEMSGE 78
           LE+PAI +V++L  VL E++N++  +Y R+R + +N  + F+ F+N+HH++TYV++  GE
Sbjct: 80  LEDPAIRNVIVLQTVLQEVRNRSAPVYKRIRDVTNNQEKHFYTFTNEHHRETYVEQEQGE 139

Query: 79  --------TIRVATQWYQKHL-----GGATRVLVVINDRENKRKAIEEGIYAET 120
                    IRVA +WY +HL         +V+ + NDR NK KAIEEGI A T
Sbjct: 140 NANDRNDRAIRVAAKWYNEHLKKMSADNQLQVIFITNDRRNKEKAIEEGIPAFT 193

[Close]

BLAST of MC08g1805.1 vs. ExPASy Swiss-Prot
Match: Q9CSH3 (Exosome complex exonuclease RRP44 OS=Mus musculus OX=10090 GN=Dis3 PE=1 SV=4)

HSP 1 Score: 96.7 bits (239), Expect = 2.0e-19
Identity = 46/114 (40.35%), Postives = 75/114 (65.79%), Query Frame = 0


Query: 19  LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTYVKEMSGE 78
           LE+PAI +V++L  V+ E++N++  IY R+R + +N  + F+ F+N+HHK+TY+++  GE
Sbjct: 80  LEHPAIRNVIVLQTVMQEVRNRSAPIYKRIRDVTNNQEKHFYTFTNEHHKETYIEQEQGE 139

Query: 79  --------TIRVATQWYQKHL-----GGATRVLVVINDRENKRKAIEEGIYAET 120
                    IRVA +WY +HL         +V+++ NDR+NK KA++EGI A T
Sbjct: 140 NANDRNDRAIRVAAKWYNEHLKRVAADSQLQVILITNDRKNKEKAVQEGIPAFT 193

[Close]

BLAST of MC08g1805.1 vs. ExPASy Swiss-Prot
Match: P37202 (Exosome complex exonuclease dis3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dis3 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.8e-12
Identity = 38/106 (35.85%), Postives = 60/106 (56.60%), Query Frame = 0


Query: 26  DVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTYVKEMSGET------ 85
           DV++L  V  EI +K++ +YNR++ LC    +RF  FSN+   DT+V+ +  E+      
Sbjct: 107 DVIILQTVFSEISSKSIPLYNRMKRLCQEKTKRFTPFSNEFFVDTFVERLDDESANDRND 166

Query: 86  --IRVATQWYQKHLGG-ATRVLVVINDRENKRKAIEEGIYAETKTD 123
             IR A  W+  HL     +++++ +DREN R A E+GI   T  D
Sbjct: 167 RAIRNAASWFASHLASLGIKIVLLTDDRENARLAAEQGIQVSTLKD 212

[Close]

BLAST of MC08g1805.1 vs. ExPASy Swiss-Prot
Match: Q08162 (Exosome complex exonuclease DIS3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DIS3 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.5e-11
Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = 0


Query: 19  LENP-AIDDVVMLSVVLDEIKNKNLSIYNRVRALC--SNPLRRFFVFSNKHHKDTYVKEM 78
           LENP    DV++  +VLDE++NK+  +Y R+R LC  S+  +RF VF N+  + T+V+ +
Sbjct: 102 LENPNCFFDVIVPQIVLDEVRNKSYPVYTRLRTLCRDSDDHKRFIVFHNEFSEHTFVERL 161

Query: 79  SGET--------IRVATQWYQKHLGG-ATRVLVVINDRENKRKAIEE 114
             ET        IR   QWY +HL      V++V NDR N+  A +E
Sbjct: 162 PNETINDRNDRAIRKTCQWYSEHLKPYDINVVLVTNDRLNREAATKE 208

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BLAST of MC08g1805.1 vs. NCBI nr
Match: XP_022143443.1 (exosome complex exonuclease RRP44 homolog A-like [Momordica charantia])

HSP 1 Score: 240 bits (613), Expect = 1.22e-79
Identity = 125/134 (93.28%), Postives = 126/134 (94.03%), Query Frame = 0


Query: 1   MLHNKSFVKKTKSVKVMKLENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFF 60
           MLHNKSFVKKTKSVKVMKLENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFF
Sbjct: 1   MLHNKSFVKKTKSVKVMKLENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFF 60

Query: 61  VFSNKHHKDTYVKEMSGET--------IRVATQWYQKHLGGATRVLVVINDRENKRKAIE 120
           VFSNKHHKDTYVKEMSGE+        IRVATQWYQKHLGGATRVLVVINDRENKRKAIE
Sbjct: 61  VFSNKHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVLVVINDRENKRKAIE 120

Query: 121 EGIYAETKTDLGLD 126
           EGIYAETKTDLGLD
Sbjct: 121 EGIYAETKTDLGLD 134

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BLAST of MC08g1805.1 vs. NCBI nr
Match: XP_022135948.1 (exosome complex exonuclease RRP44 homolog A [Momordica charantia])

HSP 1 Score: 195 bits (495), Expect = 5.19e-55
Identity = 112/176 (63.64%), Postives = 117/176 (66.48%), Query Frame = 0


Query: 1   MLHNKSFVKKTKSVKVMK------------------------------------------ 60
           MLHNKSFVKKTKS KVMK                                          
Sbjct: 1   MLHNKSFVKKTKSGKVMKQVREHYLRDDIYCGTSICKSCDSSVARLSASTSPILVLDTNV 60

Query: 61  -------LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTY 119
                  LENPAIDDVVMLSVVLDE+KNKNLS+YNRVRALCSNPLRRFFVFSN+HHKDTY
Sbjct: 61  VLTQIDLLENPAIDDVVMLSVVLDEVKNKNLSVYNRVRALCSNPLRRFFVFSNEHHKDTY 120

[Close]

BLAST of MC08g1805.1 vs. NCBI nr
Match: XP_022952404.1 (exosome complex exonuclease RRP44 homolog A-like [Cucurbita moschata])

HSP 1 Score: 184 bits (468), Expect = 2.75e-51
Identity = 104/176 (59.09%), Postives = 114/176 (64.77%), Query Frame = 0


Query: 1   MLHNKSFVKKTKSVKVMK------------------------------------------ 60
           MLHNKSFVKKTKS KVMK                                          
Sbjct: 1   MLHNKSFVKKTKSGKVMKQVREHYLRDDIYCGTSICEKCDSSVARLSASTSPILVLDTNV 60

Query: 61  -------LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTY 119
                  LENPAIDDVVMLS+VLDE+KNKNLS+YNRVRALCSNPLRRFFVFSN+HHKDTY
Sbjct: 61  VLNQIDLLENPAIDDVVMLSIVLDEVKNKNLSVYNRVRALCSNPLRRFFVFSNEHHKDTY 120

[Close]

BLAST of MC08g1805.1 vs. NCBI nr
Match: XP_023554295.1 (exosome complex exonuclease RRP44 homolog A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184 bits (468), Expect = 2.75e-51
Identity = 104/176 (59.09%), Postives = 114/176 (64.77%), Query Frame = 0


Query: 1   MLHNKSFVKKTKSVKVMK------------------------------------------ 60
           MLHNKSFVKKTKS KVMK                                          
Sbjct: 1   MLHNKSFVKKTKSGKVMKQVREHYLRDDIYCGTSICKKCDSSVARLSASTAPILVLDTNV 60

Query: 61  -------LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTY 119
                  LENPAIDDVVMLS+VLDE+KNKNLS+YNRVRALCSNPLRRFFVFSN+HHKDTY
Sbjct: 61  VLNQIDLLENPAIDDVVMLSIVLDEVKNKNLSVYNRVRALCSNPLRRFFVFSNEHHKDTY 120

[Close]

BLAST of MC08g1805.1 vs. NCBI nr
Match: XP_022972336.1 (exosome complex exonuclease RRP44 homolog A-like [Cucurbita maxima])

HSP 1 Score: 184 bits (468), Expect = 2.75e-51
Identity = 104/176 (59.09%), Postives = 114/176 (64.77%), Query Frame = 0


Query: 1   MLHNKSFVKKTKSVKVMK------------------------------------------ 60
           MLHNKSFVKKTKS KVMK                                          
Sbjct: 1   MLHNKSFVKKTKSGKVMKQVREHYLRDDIYCGTSICKKCDSSVARLSASTSPILVLDTNV 60

Query: 61  -------LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTY 119
                  LENPAIDDVVMLS+VLDE+KNKNLS+YNRVRALCSNPLRRFFVFSN+HHKDTY
Sbjct: 61  VLNQIDLLENPAIDDVVMLSIVLDEVKNKNLSVYNRVRALCSNPLRRFFVFSNEHHKDTY 120

[Close]

BLAST of MC08g1805.1 vs. ExPASy TrEMBL
Match: A0A6J1CQQ6 (exosome complex exonuclease RRP44 homolog A-like OS=Momordica charantia OX=3673 GN=LOC111013318 PE=4 SV=1)

HSP 1 Score: 240 bits (613), Expect = 5.92e-80
Identity = 125/134 (93.28%), Postives = 126/134 (94.03%), Query Frame = 0


Query: 1   MLHNKSFVKKTKSVKVMKLENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFF 60
           MLHNKSFVKKTKSVKVMKLENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFF
Sbjct: 1   MLHNKSFVKKTKSVKVMKLENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFF 60

Query: 61  VFSNKHHKDTYVKEMSGET--------IRVATQWYQKHLGGATRVLVVINDRENKRKAIE 120
           VFSNKHHKDTYVKEMSGE+        IRVATQWYQKHLGGATRVLVVINDRENKRKAIE
Sbjct: 61  VFSNKHHKDTYVKEMSGESKNDRNDRAIRVATQWYQKHLGGATRVLVVINDRENKRKAIE 120

Query: 121 EGIYAETKTDLGLD 126
           EGIYAETKTDLGLD
Sbjct: 121 EGIYAETKTDLGLD 134

[Close]

BLAST of MC08g1805.1 vs. ExPASy TrEMBL
Match: A0A6J1C6A0 (exosome complex exonuclease RRP44 homolog A OS=Momordica charantia OX=3673 GN=LOC111007782 PE=3 SV=1)

HSP 1 Score: 195 bits (495), Expect = 2.51e-55
Identity = 112/176 (63.64%), Postives = 117/176 (66.48%), Query Frame = 0


Query: 1   MLHNKSFVKKTKSVKVMK------------------------------------------ 60
           MLHNKSFVKKTKS KVMK                                          
Sbjct: 1   MLHNKSFVKKTKSGKVMKQVREHYLRDDIYCGTSICKSCDSSVARLSASTSPILVLDTNV 60

Query: 61  -------LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTY 119
                  LENPAIDDVVMLSVVLDE+KNKNLS+YNRVRALCSNPLRRFFVFSN+HHKDTY
Sbjct: 61  VLTQIDLLENPAIDDVVMLSVVLDEVKNKNLSVYNRVRALCSNPLRRFFVFSNEHHKDTY 120

[Close]

BLAST of MC08g1805.1 vs. ExPASy TrEMBL
Match: A0A6J1I5P7 (exosome complex exonuclease RRP44 homolog A-like OS=Cucurbita maxima OX=3661 GN=LOC111470918 PE=3 SV=1)

HSP 1 Score: 184 bits (468), Expect = 1.33e-51
Identity = 104/176 (59.09%), Postives = 114/176 (64.77%), Query Frame = 0


Query: 1   MLHNKSFVKKTKSVKVMK------------------------------------------ 60
           MLHNKSFVKKTKS KVMK                                          
Sbjct: 1   MLHNKSFVKKTKSGKVMKQVREHYLRDDIYCGTSICKKCDSSVARLSASTSPILVLDTNV 60

Query: 61  -------LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTY 119
                  LENPAIDDVVMLS+VLDE+KNKNLS+YNRVRALCSNPLRRFFVFSN+HHKDTY
Sbjct: 61  VLNQIDLLENPAIDDVVMLSIVLDEVKNKNLSVYNRVRALCSNPLRRFFVFSNEHHKDTY 120

[Close]

BLAST of MC08g1805.1 vs. ExPASy TrEMBL
Match: A0A6J1GLL6 (exosome complex exonuclease RRP44 homolog A-like OS=Cucurbita moschata OX=3662 GN=LOC111455103 PE=3 SV=1)

HSP 1 Score: 184 bits (468), Expect = 1.33e-51
Identity = 104/176 (59.09%), Postives = 114/176 (64.77%), Query Frame = 0


Query: 1   MLHNKSFVKKTKSVKVMK------------------------------------------ 60
           MLHNKSFVKKTKS KVMK                                          
Sbjct: 1   MLHNKSFVKKTKSGKVMKQVREHYLRDDIYCGTSICEKCDSSVARLSASTSPILVLDTNV 60

Query: 61  -------LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTY 119
                  LENPAIDDVVMLS+VLDE+KNKNLS+YNRVRALCSNPLRRFFVFSN+HHKDTY
Sbjct: 61  VLNQIDLLENPAIDDVVMLSIVLDEVKNKNLSVYNRVRALCSNPLRRFFVFSNEHHKDTY 120

[Close]

BLAST of MC08g1805.1 vs. ExPASy TrEMBL
Match: A0A0A0K821 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G074840 PE=3 SV=1)

HSP 1 Score: 181 bits (459), Expect = 2.29e-50
Identity = 104/176 (59.09%), Postives = 113/176 (64.20%), Query Frame = 0


Query: 1   MLHNKSFVKKTKSVKVMK------------------------------------------ 60
           MLHNKSFVKKTKS KVMK                                          
Sbjct: 1   MLHNKSFVKKTKSGKVMKQVREHYLRDDIYCGASICKKCDSSVARLGASTSPILVLDTNV 60

Query: 61  -------LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTY 119
                  LEN AIDDVVMLSVVLDE+KNKNLS+YNRVRALCSNPLRRFFVFSN+HHKDTY
Sbjct: 61  VLTQIGLLENSAIDDVVMLSVVLDEVKNKNLSVYNRVRALCSNPLRRFFVFSNEHHKDTY 120

[Close]

BLAST of MC08g1805.1 vs. TAIR 10
Match: AT2G17510.1 (ribonuclease II family protein )

HSP 1 Score: 142.9 bits (359), Expect = 1.8e-34
Identity = 73/109 (66.97%), Postives = 85/109 (77.98%), Query Frame = 0


Query: 19  LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTYVKEMSGE 78
           LEN AID VV+LSVVLDE+KN+N S+YNR+R LCSNP R+F+VFSN  HKDTYV+ M  E
Sbjct: 66  LENKAIDTVVVLSVVLDEVKNRNRSVYNRIRLLCSNPARQFYVFSNHVHKDTYVQAMEKE 125

Query: 79  T--------IRVATQWYQKHLGGATRVLVVINDRENKRKAIEEGIYAET 120
           +        IRVAT WYQKHLG  ++VL+V NDRENKRKA EEGI AET
Sbjct: 126 SANDHNDRAIRVATLWYQKHLGDTSQVLLVTNDRENKRKATEEGISAET 174

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BLAST of MC08g1805.1 vs. TAIR 10
Match: AT2G17510.2 (ribonuclease II family protein )

HSP 1 Score: 142.9 bits (359), Expect = 1.8e-34
Identity = 73/109 (66.97%), Postives = 85/109 (77.98%), Query Frame = 0


Query: 19  LENPAIDDVVMLSVVLDEIKNKNLSIYNRVRALCSNPLRRFFVFSNKHHKDTYVKEMSGE 78
           LEN AID VV+LSVVLDE+KN+N S+YNR+R LCSNP R+F+VFSN  HKDTYV+ M  E
Sbjct: 111 LENKAIDTVVVLSVVLDEVKNRNRSVYNRIRLLCSNPARQFYVFSNHVHKDTYVQAMEKE 170

Query: 79  T--------IRVATQWYQKHLGGATRVLVVINDRENKRKAIEEGIYAET 120
           +        IRVAT WYQKHLG  ++VL+V NDRENKRKA EEGI AET
Sbjct: 171 SANDHNDRAIRVATLWYQKHLGDTSQVLLVTNDRENKRKATEEGISAET 219

The following BLAST results are available for this feature:

BLAST of MC08g1805.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SHL7	2.5e-33	66.97	Exosome complex exonuclease RRP44 homolog A OS=Arabidopsis thaliana OX=3702 GN=R...	[more]
Q9Y2L1	2.0e-19	42.11	Exosome complex exonuclease RRP44 OS=Homo sapiens OX=9606 GN=DIS3 PE=1 SV=2	[more]
Q9CSH3	2.0e-19	40.35	Exosome complex exonuclease RRP44 OS=Mus musculus OX=10090 GN=Dis3 PE=1 SV=4	[more]
P37202	1.8e-12	35.85	Exosome complex exonuclease dis3 OS=Schizosaccharomyces pombe (strain 972 / ATCC...	[more]
Q08162	3.5e-11	39.25	Exosome complex exonuclease DIS3 OS=Saccharomyces cerevisiae (strain ATCC 204508...	[more]

BLAST of MC08g1805.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143443.1	1.22e-79	93.28	exosome complex exonuclease RRP44 homolog A-like [Momordica charantia]	[more]
XP_022135948.1	5.19e-55	63.64	exosome complex exonuclease RRP44 homolog A [Momordica charantia]	[more]
XP_022952404.1	2.75e-51	59.09	exosome complex exonuclease RRP44 homolog A-like [Cucurbita moschata]	[more]
XP_023554295.1	2.75e-51	59.09	exosome complex exonuclease RRP44 homolog A-like [Cucurbita pepo subsp. pepo]	[more]
XP_022972336.1	2.75e-51	59.09	exosome complex exonuclease RRP44 homolog A-like [Cucurbita maxima]	[more]

BLAST of MC08g1805.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQQ6	5.92e-80	93.28	exosome complex exonuclease RRP44 homolog A-like OS=Momordica charantia OX=3673 ...	[more]
A0A6J1C6A0	2.51e-55	63.64	exosome complex exonuclease RRP44 homolog A OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1I5P7	1.33e-51	59.09	exosome complex exonuclease RRP44 homolog A-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1GLL6	1.33e-51	59.09	exosome complex exonuclease RRP44 homolog A-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A0A0K821	2.29e-50	59.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G074840 PE=3 SV=1	[more]

BLAST of MC08g1805.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G17510.1	1.8e-34	66.97	ribonuclease II family protein	[more]
AT2G17510.2	1.8e-34	66.97	ribonuclease II family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.1010		coord: 12..123 e-value: 1.0E-30 score: 108.8
None	No IPR available	PANTHER	PTHR23355:SF35	EXOSOME COMPLEX EXONUCLEASE RRP44	coord: 19..120
None	No IPR available	PANTHER	PTHR23355	RIBONUCLEASE	coord: 19..120

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC08g1805	MC08g1805	gene

The following utr5 feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC08g1805.1-utr5	MC08g1805.1-utr5-MC08:26194188..26194544	utr5
MC08g1805.1-utr5	MC08g1805.1-utr5-MC08:26194850..26194975	utr5

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC08g1805.1-cds	MC08g1805.1-cds-MC08:26194976..26195029	CDS
MC08g1805.1-cds	MC08g1805.1-cds-MC08:26195111..26195259	CDS
MC08g1805.1-cds	MC08g1805.1-cds-MC08:26195839..26195870	CDS
MC08g1805.1-cds	MC08g1805.1-cds-MC08:26196172..26196294	CDS
MC08g1805.1-cds	MC08g1805.1-cds-MC08:26196443..26196465	CDS

The following utr3 feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC08g1805.1-utr3	MC08g1805.1-utr3-MC08:26196466..26196575	utr3
MC08g1805.1-utr3	MC08g1805.1-utr3-MC08:26197609..26198037	utr3

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC08g1805.1	MC08g1805.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0016070	RNA metabolic process
cellular_component	GO:0000178	exosome (RNase complex)
cellular_component	GO:0005634	nucleus
molecular_function	GO:0004527	exonuclease activity
molecular_function	GO:0004540	ribonuclease activity