MC08g1395.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC08g1395.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Gibberellin-regulated protein
Location	MC08: 14414051 .. 14414239 (+)
Sequence length	189
RNA-Seq Expression	MC08g1395.1
Synteny	MC08g1395.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATGCACAGAATGCCCAAATCGGTGCGCGACTCGGTGCGGGAAGACGCAGTACCACAAGCCATGCATGTTCTTCTGCCAAAAGTGCTGCAGAAAGTGCTTGTGCGTGCCGCCTGGTTACTATGGAAACAAAGGCGTCTGCCCTTGCTACAACAACTGGAAGACCAAGGAAGGAGGGCCCAAATGCCCT

mRNA sequence

AAATGCACAGAATGCCCAAATCGGTGCGCGACTCGGTGCGGGAAGACGCAGTACCACAAGCCATGCATGTTCTTCTGCCAAAAGTGCTGCAGAAAGTGCTTGTGCGTGCCGCCTGGTTACTATGGAAACAAAGGCGTCTGCCCTTGCTACAACAACTGGAAGACCAAGGAAGGAGGGCCCAAATGCCCT

Coding sequence (CDS)

AAATGCACAGAATGCCCAAATCGGTGCGCGACTCGGTGCGGGAAGACGCAGTACCACAAGCCATGCATGTTCTTCTGCCAAAAGTGCTGCAGAAAGTGCTTGTGCGTGCCGCCTGGTTACTATGGAAACAAAGGCGTCTGCCCTTGCTACAACAACTGGAAGACCAAGGAAGGAGGGCCCAAATGCCCT

Protein sequence

KCTECPNRCATRCGKTQYHKPCMFFCQKCCRKCLCVPPGYYGNKGVCPCYNNWKTKEGGPKCP

Homology

[Close]

BLAST of MC08g1395.1 vs. ExPASy Swiss-Prot
Match: P46690 (Gibberellin-regulated protein 4 OS=Arabidopsis thaliana OX=3702 GN=GASA4 PE=1 SV=2)

HSP 1 Score: 122.5 bits (306), Expect = 1.7e-27
Identity = 49/63 (77.78%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 1   KCTECPNRCATRCGKTQYHKPCMFFCQKCCRKCLCVPPGYYGNKGVCPCYNNWKTKEGGP 60
           K T+CP+ C  RC KTQYHK C+ FC KCCRKCLCVPPGYYGNK VC CYNNWKT+EGGP
Sbjct: 44  KRTQCPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGP 103

Query: 61  KCP 64
           KCP
Sbjct: 104 KCP 106

[Close]

BLAST of MC08g1395.1 vs. ExPASy Swiss-Prot
Match: Q6NMQ7 (Gibberellin-regulated protein 6 OS=Arabidopsis thaliana OX=3702 GN=GASA6 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 5.0e-27
Identity = 47/63 (74.60%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1   KCTECPNRCATRCGKTQYHKPCMFFCQKCCRKCLCVPPGYYGNKGVCPCYNNWKTKEGGP 60
           K  +C  +C  RC  T+YHKPCMFFCQKCC KCLCVPPG YGNK VCPCYNNWKT++GGP
Sbjct: 39  KSYQCGGQCTRRCSNTKYHKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGP 98

Query: 61  KCP 64
           KCP
Sbjct: 99  KCP 101

[Close]

BLAST of MC08g1395.1 vs. ExPASy Swiss-Prot
Match: A8MR46 (Gibberellin-regulated protein 13 OS=Arabidopsis thaliana OX=3702 GN=GASA13 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.5e-26
Identity = 47/60 (78.33%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 4   ECPNRCATRCGKTQYHKPCMFFCQKCCRKCLCVPPGYYGNKGVCPCYNNWKTKEGGPKCP 63
           EC  RC  RC  TQY KPC+FFC KCC KCLCVPPG YGNK VCPCYNNWKTK GGPKCP
Sbjct: 44  ECGPRCGDRCSNTQYKKPCLFFCNKCCNKCLCVPPGTYGNKQVCPCYNNWKTKSGGPKCP 103

[Close]

BLAST of MC08g1395.1 vs. ExPASy Swiss-Prot
Match: P27057 (Protein GAST1 OS=Solanum lycopersicum OX=4081 GN=GAST1 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 8.0e-25
Identity = 45/60 (75.00%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 4   ECPNRCATRCGKTQYHKPCMFFCQKCCRKCLCVPPGYYGNKGVCPCYNNWKTKEGGPKCP 63
           +C  +C  RC KT Y KPCMFFCQKCC KCLCVP G YGNK  CPCYNNWKTK GGPKCP
Sbjct: 53  DCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112

[Close]

BLAST of MC08g1395.1 vs. ExPASy Swiss-Prot
Match: Q84J95 (Gibberellin-regulated protein 5 OS=Arabidopsis thaliana OX=3702 GN=GASA5 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 8.9e-24
Identity = 43/63 (68.25%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 1  KCTECPNRCATRCGKTQYHKPCMFFCQKCCRKCLCVPPGYYGNKGVCPCYNNWKTKEGGP 60
          K  +C ++C+ RC  T + KPCMFFC KCC+KCLCVPPG +GNK  CPCYNNWKTKEG P
Sbjct: 35 KPQQCNSKCSFRCSATSHKKPCMFFCLKCCKKCLCVPPGTFGNKQTCPCYNNWKTKEGRP 94

Query: 61 KCP 64
          KCP
Sbjct: 95 KCP 97

[Close]

BLAST of MC08g1395.1 vs. NCBI nr
Match: XP_023531468.1 (gibberellin-regulated protein 4-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147 bits (370), Expect = 1.18e-43
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1   KCTECPNRCATRCGKTQYHKPCMFFCQKCCRKCLCVPPGYYGNKGVCPCYNNWKTKEGGP 60
           K TECP+RCA+RCG+TQYHKPCMFFCQKCCRKCLCVPPGYYGNKGVCPCYNNWKTKEGGP
Sbjct: 78  KLTECPSRCASRCGRTQYHKPCMFFCQKCCRKCLCVPPGYYGNKGVCPCYNNWKTKEGGP 137

Query: 61  KCP 63
           KCP
Sbjct: 138 KCP 140

[Close]

BLAST of MC08g1395.1 vs. NCBI nr
Match: XP_004147472.1 (gibberellin-regulated protein 4 [Cucumis sativus] >KGN59572.1 hypothetical protein Csa_002031 [Cucumis sativus])

HSP 1 Score: 144 bits (364), Expect = 3.20e-43
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1   KCTECPNRCATRCGKTQYHKPCMFFCQKCCRKCLCVPPGYYGNKGVCPCYNNWKTKEGGP 60
           K  +CPNRCATRCG+TQYHKPCMFFCQKCCRKCLCVPPGYYGNK VCPCYNNWKTKEGGP
Sbjct: 42  KAFQCPNRCATRCGRTQYHKPCMFFCQKCCRKCLCVPPGYYGNKAVCPCYNNWKTKEGGP 101

Query: 61  KCP 63
           KCP
Sbjct: 102 KCP 104

[Close]

BLAST of MC08g1395.1 vs. NCBI nr
Match: XP_022933448.1 (gibberellin-regulated protein 4-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 144 bits (364), Expect = 3.61e-43
Identity = 57/60 (95.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 4   ECPNRCATRCGKTQYHKPCMFFCQKCCRKCLCVPPGYYGNKGVCPCYNNWKTKEGGPKCP 63
           +CP+RCATRCG+TQYHKPCMFFCQKCCRKCLCVPPGYYGNKGVCPCYNNWKTKEGGPKCP
Sbjct: 49  QCPSRCATRCGRTQYHKPCMFFCQKCCRKCLCVPPGYYGNKGVCPCYNNWKTKEGGPKCP 108

[Close]

BLAST of MC08g1395.1 vs. NCBI nr
Match: XP_038903602.1 (gibberellin-regulated protein 4 [Benincasa hispida])

HSP 1 Score: 144 bits (363), Expect = 4.54e-43
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 4   ECPNRCATRCGKTQYHKPCMFFCQKCCRKCLCVPPGYYGNKGVCPCYNNWKTKEGGPKCP 63
           +CPNRCATRCG+TQYHKPCMFFCQKCCRKCLCVPPGYYGNK VCPCYNNWKTKEGGPKCP
Sbjct: 45  QCPNRCATRCGRTQYHKPCMFFCQKCCRKCLCVPPGYYGNKAVCPCYNNWKTKEGGPKCP 104

[Close]

BLAST of MC08g1395.1 vs. NCBI nr
Match: XP_022935665.1 (gibberellin-regulated protein 4-like [Cucurbita moschata] >XP_022983885.1 gibberellin-regulated protein 4 [Cucurbita maxima] >XP_023528273.1 gibberellin-regulated protein 4-like [Cucurbita pepo subsp. pepo] >KAG6580967.1 Gibberellin-regulated protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144 bits (363), Expect = 4.83e-43
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 4   ECPNRCATRCGKTQYHKPCMFFCQKCCRKCLCVPPGYYGNKGVCPCYNNWKTKEGGPKCP 63
           +CPNRCATRCG+TQYHKPCMFFCQKCCRKCLCVPPGYYGNK VCPCYNNWKTKEGGPKCP
Sbjct: 47  QCPNRCATRCGRTQYHKPCMFFCQKCCRKCLCVPPGYYGNKAVCPCYNNWKTKEGGPKCP 106

[Close]

BLAST of MC08g1395.1 vs. ExPASy TrEMBL
Match: A0A0A0LG20 (Gip1-like protein OS=Cucumis sativus OX=3659 GN=Csa_3G826660 PE=3 SV=1)

HSP 1 Score: 144 bits (364), Expect = 1.55e-43
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1   KCTECPNRCATRCGKTQYHKPCMFFCQKCCRKCLCVPPGYYGNKGVCPCYNNWKTKEGGP 60
           K  +CPNRCATRCG+TQYHKPCMFFCQKCCRKCLCVPPGYYGNK VCPCYNNWKTKEGGP
Sbjct: 42  KAFQCPNRCATRCGRTQYHKPCMFFCQKCCRKCLCVPPGYYGNKAVCPCYNNWKTKEGGP 101

Query: 61  KCP 63
           KCP
Sbjct: 102 KCP 104

[Close]

BLAST of MC08g1395.1 vs. ExPASy TrEMBL
Match: A0A6J1F4S2 (gibberellin-regulated protein 4-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111440860 PE=3 SV=1)

HSP 1 Score: 144 bits (364), Expect = 1.75e-43
Identity = 57/60 (95.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 4   ECPNRCATRCGKTQYHKPCMFFCQKCCRKCLCVPPGYYGNKGVCPCYNNWKTKEGGPKCP 63
           +CP+RCATRCG+TQYHKPCMFFCQKCCRKCLCVPPGYYGNKGVCPCYNNWKTKEGGPKCP
Sbjct: 49  QCPSRCATRCGRTQYHKPCMFFCQKCCRKCLCVPPGYYGNKGVCPCYNNWKTKEGGPKCP 108

[Close]

BLAST of MC08g1395.1 vs. ExPASy TrEMBL
Match: A0A6J1J761 (gibberellin-regulated protein 4 OS=Cucurbita maxima OX=3661 GN=LOC111482365 PE=3 SV=1)

HSP 1 Score: 144 bits (363), Expect = 2.34e-43
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 4   ECPNRCATRCGKTQYHKPCMFFCQKCCRKCLCVPPGYYGNKGVCPCYNNWKTKEGGPKCP 63
           +CPNRCATRCG+TQYHKPCMFFCQKCCRKCLCVPPGYYGNK VCPCYNNWKTKEGGPKCP
Sbjct: 47  QCPNRCATRCGRTQYHKPCMFFCQKCCRKCLCVPPGYYGNKAVCPCYNNWKTKEGGPKCP 106

[Close]

BLAST of MC08g1395.1 vs. ExPASy TrEMBL
Match: A0A6J1FBA5 (gibberellin-regulated protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111442454 PE=3 SV=1)

HSP 1 Score: 144 bits (363), Expect = 2.34e-43
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 4   ECPNRCATRCGKTQYHKPCMFFCQKCCRKCLCVPPGYYGNKGVCPCYNNWKTKEGGPKCP 63
           +CPNRCATRCG+TQYHKPCMFFCQKCCRKCLCVPPGYYGNK VCPCYNNWKTKEGGPKCP
Sbjct: 47  QCPNRCATRCGRTQYHKPCMFFCQKCCRKCLCVPPGYYGNKAVCPCYNNWKTKEGGPKCP 106

[Close]

BLAST of MC08g1395.1 vs. ExPASy TrEMBL
Match: A0A1S3B8R3 (gibberellin-regulated protein 6 OS=Cucumis melo OX=3656 GN=LOC103487004 PE=3 SV=1)

HSP 1 Score: 142 bits (357), Expect = 8.83e-43
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 4  ECPNRCATRCGKTQYHKPCMFFCQKCCRKCLCVPPGYYGNKGVCPCYNNWKTKEGGPKCP 63
          +CPNRCA RCG+TQYHKPCMFFCQKCCRKCLCVPPGYYGNK VCPCYNNWKTKEGGPKCP
Sbjct: 21 QCPNRCAKRCGRTQYHKPCMFFCQKCCRKCLCVPPGYYGNKAVCPCYNNWKTKEGGPKCP 80

[Close]

BLAST of MC08g1395.1 vs. TAIR 10
Match: AT5G15230.1 (GAST1 protein homolog 4 )

HSP 1 Score: 122.5 bits (306), Expect = 1.2e-28
Identity = 49/63 (77.78%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 1   KCTECPNRCATRCGKTQYHKPCMFFCQKCCRKCLCVPPGYYGNKGVCPCYNNWKTKEGGP 60
           K T+CP+ C  RC KTQYHK C+ FC KCCRKCLCVPPGYYGNK VC CYNNWKT+EGGP
Sbjct: 44  KRTQCPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGP 103

Query: 61  KCP 64
           KCP
Sbjct: 104 KCP 106

[Close]

BLAST of MC08g1395.1 vs. TAIR 10
Match: AT5G15230.2 (GAST1 protein homolog 4 )

HSP 1 Score: 122.5 bits (306), Expect = 1.2e-28
Identity = 49/63 (77.78%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 1  KCTECPNRCATRCGKTQYHKPCMFFCQKCCRKCLCVPPGYYGNKGVCPCYNNWKTKEGGP 60
          K T+CP+ C  RC KTQYHK C+ FC KCCRKCLCVPPGYYGNK VC CYNNWKT+EGGP
Sbjct: 21 KRTQCPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGP 80

Query: 61 KCP 64
          KCP
Sbjct: 81 KCP 83

[Close]

BLAST of MC08g1395.1 vs. TAIR 10
Match: AT1G74670.1 (Gibberellin-regulated family protein )

HSP 1 Score: 120.9 bits (302), Expect = 3.6e-28
Identity = 47/63 (74.60%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1   KCTECPNRCATRCGKTQYHKPCMFFCQKCCRKCLCVPPGYYGNKGVCPCYNNWKTKEGGP 60
           K  +C  +C  RC  T+YHKPCMFFCQKCC KCLCVPPG YGNK VCPCYNNWKT++GGP
Sbjct: 39  KSYQCGGQCTRRCSNTKYHKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGP 98

Query: 61  KCP 64
           KCP
Sbjct: 99  KCP 101

[Close]

BLAST of MC08g1395.1 vs. TAIR 10
Match: AT3G10185.1 (Gibberellin-regulated family protein )

HSP 1 Score: 118.6 bits (296), Expect = 1.8e-27
Identity = 47/60 (78.33%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 4   ECPNRCATRCGKTQYHKPCMFFCQKCCRKCLCVPPGYYGNKGVCPCYNNWKTKEGGPKCP 63
           EC  RC  RC  TQY KPC+FFC KCC KCLCVPPG YGNK VCPCYNNWKTK GGPKCP
Sbjct: 44  ECGPRCGDRCSNTQYKKPCLFFCNKCCNKCLCVPPGTYGNKQVCPCYNNWKTKSGGPKCP 103

[Close]

BLAST of MC08g1395.1 vs. TAIR 10
Match: AT3G02885.1 (GAST1 protein homolog 5 )

HSP 1 Score: 110.2 bits (274), Expect = 6.3e-25
Identity = 43/63 (68.25%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 1  KCTECPNRCATRCGKTQYHKPCMFFCQKCCRKCLCVPPGYYGNKGVCPCYNNWKTKEGGP 60
          K  +C ++C+ RC  T + KPCMFFC KCC+KCLCVPPG +GNK  CPCYNNWKTKEG P
Sbjct: 35 KPQQCNSKCSFRCSATSHKKPCMFFCLKCCKKCLCVPPGTFGNKQTCPCYNNWKTKEGRP 94

Query: 61 KCP 64
          KCP
Sbjct: 95 KCP 97

The following BLAST results are available for this feature:

BLAST of MC08g1395.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46690	1.7e-27	77.78	Gibberellin-regulated protein 4 OS=Arabidopsis thaliana OX=3702 GN=GASA4 PE=1 SV...	[more]
Q6NMQ7	5.0e-27	74.60	Gibberellin-regulated protein 6 OS=Arabidopsis thaliana OX=3702 GN=GASA6 PE=3 SV...	[more]
A8MR46	2.5e-26	78.33	Gibberellin-regulated protein 13 OS=Arabidopsis thaliana OX=3702 GN=GASA13 PE=3 ...	[more]
P27057	8.0e-25	75.00	Protein GAST1 OS=Solanum lycopersicum OX=4081 GN=GAST1 PE=2 SV=1	[more]
Q84J95	8.9e-24	68.25	Gibberellin-regulated protein 5 OS=Arabidopsis thaliana OX=3702 GN=GASA5 PE=2 SV...	[more]

BLAST of MC08g1395.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531468.1	1.18e-43	93.65	gibberellin-regulated protein 4-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_004147472.1	3.20e-43	92.06	gibberellin-regulated protein 4 [Cucumis sativus] >KGN59572.1 hypothetical prote...	[more]
XP_022933448.1	3.61e-43	95.00	gibberellin-regulated protein 4-like isoform X2 [Cucurbita moschata]	[more]
XP_038903602.1	4.54e-43	95.00	gibberellin-regulated protein 4 [Benincasa hispida]	[more]
XP_022935665.1	4.83e-43	95.00	gibberellin-regulated protein 4-like [Cucurbita moschata] >XP_022983885.1 gibber...	[more]

BLAST of MC08g1395.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG20	1.55e-43	92.06	Gip1-like protein OS=Cucumis sativus OX=3659 GN=Csa_3G826660 PE=3 SV=1	[more]
A0A6J1F4S2	1.75e-43	95.00	gibberellin-regulated protein 4-like isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1J761	2.34e-43	95.00	gibberellin-regulated protein 4 OS=Cucurbita maxima OX=3661 GN=LOC111482365 PE=3...	[more]
A0A6J1FBA5	2.34e-43	95.00	gibberellin-regulated protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC1114424...	[more]
A0A1S3B8R3	8.83e-43	93.33	gibberellin-regulated protein 6 OS=Cucumis melo OX=3656 GN=LOC103487004 PE=3 SV=...	[more]

BLAST of MC08g1395.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15230.1	1.2e-28	77.78	GAST1 protein homolog 4	[more]
AT5G15230.2	1.2e-28	77.78	GAST1 protein homolog 4	[more]
AT1G74670.1	3.6e-28	74.60	Gibberellin-regulated family protein	[more]
AT3G10185.1	1.8e-27	78.33	Gibberellin-regulated family protein	[more]
AT3G02885.1	6.3e-25	68.25	GAST1 protein homolog 5	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003854	Gibberellin regulated protein	PFAM	PF02704	GASA	coord: 4..63 e-value: 2.4E-22 score: 78.8
None	No IPR available	PANTHER	PTHR23201	EXTENSIN, PROLINE-RICH PROTEIN	coord: 2..63
None	No IPR available	PANTHER	PTHR23201:SF69	GIBBERELLIN-REGULATED FAMILY PROTEIN	coord: 2..63

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC08g1395	MC08g1395	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC08g1395.1-cds	MC08g1395.1-cds-MC08:14414051..14414239	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC08g1395.1	MC08g1395.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
cellular_component	GO:0005576	extracellular region