MC06g_new0333.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC06g_new0333.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC06: 15259402 .. 15260489 (+)
Sequence length	879
RNA-Seq Expression	MC06g_new0333.1
Synteny	MC06g_new0333.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGACATCATTCCTAAATAGGACGTTCGAACCACCCGAGCCCGAAGATGAGGATGAAGTCCCGTGCGAGAACGATGCTGTTGAACCATCAAGTGCACGTGTAGGACCAGAGAAGGATGACGGGGGACAAGGAGCGAACGTCGACGAAGGTGTCAGAGAAGACATCCATGAAGAGCCTAAGGAGAAGGAGGAGAATGGACGTGGTAAGAAGGTACACATGTCCAGTATGTGTATGAGAAAAGTTGAGAAACGTTTGAAGCGCATGGACAGGCACATGGACGACGGGTTCGGAAGTATTAAGGCTGAATTAGAATCCATCCGGAAATTCTTGCGGAGAATCGCTAAGGTAATAACAATTTTCGACTTATAATAACTACGATGTCGTTTTCGCATAGCGAGAAATAACTTGTCCTCCATTCTATAGGGTTCACCTGTCGACTGGAATGACATGAGAAGAGGCAGCAGCTGTGATGGTACTGGGCCAGTAGATGGTTCGAGTGATGCACCTAGTGGAAGACCTATTGATGGACCCACTAGCGGACCTAGTGGTGGACCGTCACTAGCACTGATGGTGGTGATGGTTCAACCGTCACTAGCACTGATGGTGGTCGAGGTGATGGTTCTAAGGGTGGTGATGGTTCTACACCATCTCCTAGGGACGGGGACGACACAGATGACATGATCATCGAGCCTCTCCATGTCAACGTGCACGGGACAGAGGAACATCAGTCCGGCCAAACGACTGGAGAAAAGGCTGAACCAGAACGTGAGGTATGTGTTCGTAATCCATAAGTTCAAATTTGATCGTAACCATGGTCTAACGAAGGTTACTGTGTCCTGTTTCAATAGCATCCACCTGCCTTGTCGCGCAAGGAAGACATGTGTACAGAGGACGTGCACAAGGAGCGTATGGAGACCGGTCTACATGCACGTTGTGAGGTTGCCCCTCTCGAGGAGACTCCTGTTCAAAGCAAACCGGTGTACCATATTATGATCGATTCGCATCCGTTAGAGTCATCTATGGACGACGAGGTATTTATTTTTGACCTTTCACCTCTAAACACAAGATTTTATTTGCTAACATAA

mRNA sequence

ATGCTGACATCATTCCTAAATAGGACGTTCGAACCACCCGAGCCCGAAGATGAGGATGAAGTCCCGTGCGAGAACGATGCTGTTGAACCATCAAGTGCACGTGTAGGACCAGAGAAGGATGACGGGGGACAAGGAGCGAACGTCGACGAAGGTGTCAGAGAAGACATCCATGAAGAGCCTAAGGAGAAGGAGGAGAATGGACGTGGTAAGAAGGTACACATGTCCAGTATGTGTATGAGAAAAGTTGAGAAACGTTTGAAGCGCATGGACAGGCACATGGACGACGGGTTCGGAAGTATTAAGGCTGAATTAGAATCCATCCGGAAATTCTTGCGGAGAATCGCTAAGGGTTCACCTGTCGACTGGAATGACATGAGAAGAGGCAGCAGCTGTGATGGTACTGGGCCAGTAGATGGTTCGAGTGATGCACCTAGTGGAAGACCTATTGATGGACCCACTAGCGGACCTAGTGGTGGACCGTCACTAGCACTGATGGTGGGTGGTGATGGTTCTACACCATCTCCTAGGGACGGGGACGACACAGATGACATGATCATCGAGCCTCTCCATGTCAACGTGCACGGGACAGAGGAACATCAGTCCGGCCAAACGACTGGAGAAAAGGCTGAACCAGAACGTGAGCATCCACCTGCCTTGTCGCGCAAGGAAGACATGTGTACAGAGGACGTGCACAAGGAGCGTATGGAGACCGGTCTACATGCACGTTGTGAGGTTGCCCCTCTCGAGGAGACTCCTGTTCAAAGCAAACCGGTGTACCATATTATGATCGATTCGCATCCGTTAGAGTCATCTATGGACGACGAGGTATTTATTTTTGACCTTTCACCTCTAAACACAAGATTTTATTTGCTAACATAA

Coding sequence (CDS)

ATGCTGACATCATTCCTAAATAGGACGTTCGAACCACCCGAGCCCGAAGATGAGGATGAAGTCCCGTGCGAGAACGATGCTGTTGAACCATCAAGTGCACGTGTAGGACCAGAGAAGGATGACGGGGGACAAGGAGCGAACGTCGACGAAGGTGTCAGAGAAGACATCCATGAAGAGCCTAAGGAGAAGGAGGAGAATGGACGTGGTAAGAAGGTACACATGTCCAGTATGTGTATGAGAAAAGTTGAGAAACGTTTGAAGCGCATGGACAGGCACATGGACGACGGGTTCGGAAGTATTAAGGCTGAATTAGAATCCATCCGGAAATTCTTGCGGAGAATCGCTAAGGGTTCACCTGTCGACTGGAATGACATGAGAAGAGGCAGCAGCTGTGATGGTACTGGGCCAGTAGATGGTTCGAGTGATGCACCTAGTGGAAGACCTATTGATGGACCCACTAGCGGACCTAGTGGTGGACCGTCACTAGCACTGATGGTGGGTGGTGATGGTTCTACACCATCTCCTAGGGACGGGGACGACACAGATGACATGATCATCGAGCCTCTCCATGTCAACGTGCACGGGACAGAGGAACATCAGTCCGGCCAAACGACTGGAGAAAAGGCTGAACCAGAACGTGAGCATCCACCTGCCTTGTCGCGCAAGGAAGACATGTGTACAGAGGACGTGCACAAGGAGCGTATGGAGACCGGTCTACATGCACGTTGTGAGGTTGCCCCTCTCGAGGAGACTCCTGTTCAAAGCAAACCGGTGTACCATATTATGATCGATTCGCATCCGTTAGAGTCATCTATGGACGACGAGGTATTTATTTTTGACCTTTCACCTCTAAACACAAGATTTTATTTGCTAACATAA

Protein sequence

MLTSFLNRTFEPPEPEDEDEVPCENDAVEPSSARVGPEKDDGGQGANVDEGVREDIHEEPKEKEENGRGKKVHMSSMCMRKVEKRLKRMDRHMDDGFGSIKAELESIRKFLRRIAKGSPVDWNDMRRGSSCDGTGPVDGSSDAPSGRPIDGPTSGPSGGPSLALMVGGDGSTPSPRDGDDTDDMIIEPLHVNVHGTEEHQSGQTTGEKAEPEREHPPALSRKEDMCTEDVHKERMETGLHARCEVAPLEETPVQSKPVYHIMIDSHPLESSMDDEVFIFDLSPLNTRFYLLT

Homology

[Close]

BLAST of MC06g_new0333.1 vs. NCBI nr
Match: XP_022154561.1 (uncharacterized protein LOC111021802 [Momordica charantia])

HSP 1 Score: 73.2 bits (178), Expect = 1.36e-10
Identity = 47/110 (42.73%), Postives = 72/110 (65.45%), Query Frame = 0


Query: 3   TSFLNRTFEPPEPEDEDEVPCENDAVEPSSARVGPEKDDGGQGANVDEGVREDIHEEPKE 62
           TSFLNR+F+PP  +D+D +    D   PS+ R G + DD  +GA+V     E + ++ + 
Sbjct: 249 TSFLNRSFDPPVSDDDDVMEERGDNAGPSAVREGSQYDDESRGADV-----EMVEKDAEL 308

Query: 63  KEENGRGK-KVHMSSMCMRKVEKRLKRMDRHMDDGFGSIKAELESIRKFL 111
           + E  +GK KV +S+  +++VEK LK MD+ MD+  G I+AEL+SI+KFL
Sbjct: 309 ENEETKGKNKVCISTGRLKRVEKCLKSMDKRMDERMGDIEAELKSIKKFL 353

[Close]

BLAST of MC06g_new0333.1 vs. ExPASy TrEMBL
Match: A0A6J1DP34 (uncharacterized protein LOC111021802 OS=Momordica charantia OX=3673 GN=LOC111021802 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.58e-11
Identity = 47/110 (42.73%), Postives = 72/110 (65.45%), Query Frame = 0


Query: 3   TSFLNRTFEPPEPEDEDEVPCENDAVEPSSARVGPEKDDGGQGANVDEGVREDIHEEPKE 62
           TSFLNR+F+PP  +D+D +    D   PS+ R G + DD  +GA+V     E + ++ + 
Sbjct: 249 TSFLNRSFDPPVSDDDDVMEERGDNAGPSAVREGSQYDDESRGADV-----EMVEKDAEL 308

Query: 63  KEENGRGK-KVHMSSMCMRKVEKRLKRMDRHMDDGFGSIKAELESIRKFL 111
           + E  +GK KV +S+  +++VEK LK MD+ MD+  G I+AEL+SI+KFL
Sbjct: 309 ENEETKGKNKVCISTGRLKRVEKCLKSMDKRMDERMGDIEAELKSIKKFL 353

The following BLAST results are available for this feature:

BLAST of MC06g_new0333.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC06g_new0333.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154561.1	1.36e-10	42.73	uncharacterized protein LOC111021802 [Momordica charantia]	[more]

BLAST of MC06g_new0333.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DP34	6.58e-11	42.73	uncharacterized protein LOC111021802 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]

BLAST of MC06g_new0333.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..221
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 201..221
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..78

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC06g_new0333	MC06g_new0333	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC06g_new0333.1-cds	MC06g_new0333.1-cds-MC06:15259402..15259749	CDS
MC06g_new0333.1-cds	MC06g_new0333.1-cds-MC06:15259828..15259977	CDS
MC06g_new0333.1-cds	MC06g_new0333.1-cds-MC06:15260031..15260174	CDS
MC06g_new0333.1-cds	MC06g_new0333.1-cds-MC06:15260253..15260489	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC06g_new0333.1	MC06g_new0333.1-protein	polypeptide