MC06g0535.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC06g0535.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	60S ribosomal protein L39
Location	MC06: 4405790 .. 4406034 (+)
Sequence length	153
RNA-Seq Expression	MC06g0535.1
Synteny	MC06g0535.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGCCGTCGCACAAAACCTTCATTATCAAGAAAAAGCTGGCCAAGAAGATGAGGCAGAACAGGCCCATTCCTCACTGGATTCGATTGAGAACTGACAACACCATAAGGTTTTCCCCGGACTTTTACCGATTTCGTCCATGATTTTTAGTGATTTCACGGATCAGAGTTCTCATTTGGCCTTTTTGTTCGTTTGGCTCAGGTATAATGCCAAGCGTAGGCACTGGCGACGCACGAAGCTCGGTTTC

mRNA sequence

CAGCCGTCGCACAAAACCTTCATTATCAAGAAAAAGCTGGCCAAGAAGATGAGGCAGAACAGGCCCATTCCTCACTGGATTCGATTGAGAACTGACAACACCATAAGGTATAATGCCAAGCGTAGGCACTGGCGACGCACGAAGCTCGGTTTC

Coding sequence (CDS)

CAGCCGTCGCACAAAACCTTCATTATCAAGAAAAAGCTGGCCAAGAAGATGAGGCAGAACAGGCCCATTCCTCACTGGATTCGATTGAGAACTGACAACACCATAAGGTATAATGCCAAGCGTAGGCACTGGCGACGCACGAAGCTCGGTTTC

Protein sequence

QPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Homology

[Close]

BLAST of MC06g0535.1 vs. ExPASy Swiss-Prot
Match: P51424 (60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 103.2 bits (256), Expect = 8.8e-22
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 2  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          PSHK+F+IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of MC06g0535.1 vs. ExPASy Swiss-Prot
Match: Q6KAJ8 (60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 2.6e-21
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 2  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          PSHKTF IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of MC06g0535.1 vs. ExPASy Swiss-Prot
Match: P51426 (60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B PE=3 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 2.6e-21
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 2  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          PSHKTF IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of MC06g0535.1 vs. ExPASy Swiss-Prot
Match: Q5SMI4 (60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.6e-21
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 2  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          PSHKTF IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of MC06g0535.1 vs. ExPASy Swiss-Prot
Match: P51425 (60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.6e-21
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 2  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          PSHKTF IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of MC06g0535.1 vs. NCBI nr
Match: KAB1204673.1 (60S ribosomal protein L39-1 [Morella rubra])

HSP 1 Score: 106 bits (265), Expect = 6.45e-29
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  QPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51
          QPSHKTF+IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 7  QPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 57

[Close]

BLAST of MC06g0535.1 vs. NCBI nr
Match: XP_020414429.1 (60S ribosomal protein L39-1 [Prunus persica] >XP_021820892.1 60S ribosomal protein L39-1 [Prunus avium] >XP_022135168.1 60S ribosomal protein L39-1-like [Momordica charantia] >XP_022961506.1 60S ribosomal protein L39-1 [Cucurbita moschata] >XP_023516431.1 60S ribosomal protein L39-1 [Cucurbita pepo subsp. pepo] >XP_034198821.1 60S ribosomal protein L39-1 [Prunus dulcis] >ONI32872.1 hypothetical protein PRUPE_1G390600 [Prunus persica])

HSP 1 Score: 106 bits (264), Expect = 7.92e-29
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 2  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51
          PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of MC06g0535.1 vs. NCBI nr
Match: XP_008220702.1 (PREDICTED: 60S ribosomal protein L39-1 [Prunus mume])

HSP 1 Score: 105 bits (263), Expect = 1.13e-28
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 2  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51
          PSHKTF+IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKTFVIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of MC06g0535.1 vs. NCBI nr
Match: ESR63570.1 (hypothetical protein CICLE_v10010138mg [Citrus clementina] >GAY45925.1 hypothetical protein CUMW_093080 [Citrus unshiu])

HSP 1 Score: 105 bits (263), Expect = 1.18e-28
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  QPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51
          QPSHKTF+IKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 3  QPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 53

[Close]

BLAST of MC06g0535.1 vs. NCBI nr
Match: XP_030966914.1 (60S ribosomal protein L39-3 isoform X1 [Quercus lobata])

HSP 1 Score: 105 bits (263), Expect = 1.41e-28
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  QPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51
          QPSHKTF+IKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 10 QPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 60

[Close]

BLAST of MC06g0535.1 vs. ExPASy TrEMBL
Match: A0A6A1UWI8 (60S ribosomal protein L39-1 OS=Morella rubra OX=262757 GN=CJ030_MR8G012745 PE=3 SV=1)

HSP 1 Score: 106 bits (265), Expect = 3.12e-29
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  QPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51
          QPSHKTF+IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 7  QPSHKTFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 57

[Close]

BLAST of MC06g0535.1 vs. ExPASy TrEMBL
Match: A0A6P5T1X5 (60S ribosomal protein L39-1 OS=Prunus avium OX=42229 GN=LOC110762551 PE=3 SV=1)

HSP 1 Score: 106 bits (264), Expect = 3.83e-29
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 2  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51
          PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of MC06g0535.1 vs. ExPASy TrEMBL
Match: A0A6J1C421 (60S ribosomal protein L39-1-like OS=Momordica charantia OX=3673 GN=LOC111007203 PE=3 SV=1)

HSP 1 Score: 106 bits (264), Expect = 3.83e-29
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 2  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51
          PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of MC06g0535.1 vs. ExPASy TrEMBL
Match: A0A6J1HAJ4 (60S ribosomal protein L39-1 OS=Cucurbita moschata OX=3662 GN=LOC111462063 PE=3 SV=1)

HSP 1 Score: 106 bits (264), Expect = 3.83e-29
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 2  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51
          PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of MC06g0535.1 vs. ExPASy TrEMBL
Match: A0A251RA49 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G390600 PE=3 SV=1)

HSP 1 Score: 106 bits (264), Expect = 3.83e-29
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 2  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51
          PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of MC06g0535.1 vs. TAIR 10
Match: AT4G31985.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 103.2 bits (256), Expect = 6.3e-23
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 2  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          PSHK+F+IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of MC06g0535.1 vs. TAIR 10
Match: AT3G02190.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 98.2 bits (243), Expect = 2.0e-21
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 2  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          PSHK+F+IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of MC06g0535.1 vs. TAIR 10
Match: AT2G25210.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 90.9 bits (224), Expect = 3.2e-19
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 0


Query: 8  IIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          +IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 44

The following BLAST results are available for this feature:

BLAST of MC06g0535.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P51424	8.8e-22	94.00	60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2	[more]
Q6KAJ8	2.6e-21	94.00	60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A P...	[more]
P51426	2.6e-21	94.00	60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B P...	[more]
Q5SMI4	2.6e-21	94.00	60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C P...	[more]
P51425	2.6e-21	94.00	60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1	[more]

BLAST of MC06g0535.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAB1204673.1	6.45e-29	98.04	60S ribosomal protein L39-1 [Morella rubra]	[more]
XP_020414429.1	7.92e-29	100.00	60S ribosomal protein L39-1 [Prunus persica] >XP_021820892.1 60S ribosomal prote...	[more]
XP_008220702.1	1.13e-28	98.00	PREDICTED: 60S ribosomal protein L39-1 [Prunus mume]	[more]
ESR63570.1	1.18e-28	96.08	hypothetical protein CICLE_v10010138mg [Citrus clementina] >GAY45925.1 hypotheti...	[more]
XP_030966914.1	1.41e-28	96.08	60S ribosomal protein L39-3 isoform X1 [Quercus lobata]	[more]

BLAST of MC06g0535.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A1UWI8	3.12e-29	98.04	60S ribosomal protein L39-1 OS=Morella rubra OX=262757 GN=CJ030_MR8G012745 PE=3 ...	[more]
A0A6P5T1X5	3.83e-29	100.00	60S ribosomal protein L39-1 OS=Prunus avium OX=42229 GN=LOC110762551 PE=3 SV=1	[more]
A0A6J1C421	3.83e-29	100.00	60S ribosomal protein L39-1-like OS=Momordica charantia OX=3673 GN=LOC111007203 ...	[more]
A0A6J1HAJ4	3.83e-29	100.00	60S ribosomal protein L39-1 OS=Cucurbita moschata OX=3662 GN=LOC111462063 PE=3 S...	[more]
A0A251RA49	3.83e-29	100.00	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G390600 PE=3 SV=1	[more]

BLAST of MC06g0535.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G31985.1	6.3e-23	94.00	Ribosomal protein L39 family protein	[more]
AT3G02190.1	2.0e-21	90.00	Ribosomal protein L39 family protein	[more]
AT2G25210.1	3.2e-19	95.45	Ribosomal protein L39 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023626	Ribosomal protein L39e domain superfamily	GENE3D	1.10.1620.10	Ribosomal protein L39e	coord: 2..51 e-value: 3.2E-28 score: 99.4
IPR023626	Ribosomal protein L39e domain superfamily	SUPERFAMILY	48662	Ribosomal protein L39e	coord: 3..50
IPR000077	Ribosomal protein L39e	PFAM	PF00832	Ribosomal_L39	coord: 9..49 e-value: 1.8E-22 score: 78.7
None	No IPR available	PANTHER	PTHR19970	RIBOSOMAL PROTEIN L39E	coord: 2..51
None	No IPR available	PANTHER	PTHR19970:SF31	SUBFAMILY NOT NAMED	coord: 2..51
IPR020083	Ribosomal protein L39e, conserved site	PROSITE	PS00051	RIBOSOMAL_L39E	coord: 30..46

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC06g0535	MC06g0535	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC06g0535.1-cds	MC06g0535.1-cds-MC06:4405790..4405896	CDS
MC06g0535.1-cds	MC06g0535.1-cds-MC06:4405989..4406034	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC06g0535.1	MC06g0535.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome