MC06g0014.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC06g0014.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Dual specificity phosphatase family protein
Location	MC06: 129297 .. 129452 (-)
Sequence length	156
RNA-Seq Expression	MC06g0014.1
Synteny	MC06g0014.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAACGTTAAAGATCTATTGGGGGGAAACATCAGCAGTATCTTTGAAGAAGCTTGTGATTTTATTGATGATGTTGAAAGTAAAGGTGGAAAGGTCCTGGTTCATTGGTTTGAAGGGACGAGCAGAAGTGTCACATTAGTTCTTGCTTACCTGATG

mRNA sequence

ATTAACGTTAAAGATCTATTGGGGGGAAACATCAGCAGTATCTTTGAAGAAGCTTGTGATTTTATTGATGATGTTGAAAGTAAAGGTGGAAAGGTCCTGGTTCATTGGTTTGAAGGGACGAGCAGAAGTGTCACATTAGTTCTTGCTTACCTGATG

Coding sequence (CDS)

ATTAACGTTAAAGATCTATTGGGGGGAAACATCAGCAGTATCTTTGAAGAAGCTTGTGATTTTATTGATGATGTTGAAAGTAAAGGTGGAAAGGTCCTGGTTCATTGGTTTGAAGGGACGAGCAGAAGTGTCACATTAGTTCTTGCTTACCTGATG

Protein sequence

INVKDLLGGNISSIFEEACDFIDDVESKGGKVLVHWFEGTSRSVTLVLAYLM

Homology

[Close]

BLAST of MC06g0014.1 vs. ExPASy Swiss-Prot
Match: Q75QN6 (Dual specificity protein phosphatase PHS1 OS=Arabidopsis thaliana OX=3702 GN=PHS1 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.8e-09
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 2   NVKDLLGGNISSIFEEACDFIDDVESKGGKVLVHWFEGTSRSVTLVLAYLM 53
           ++ D    NI SIF+EA DFI   E  GGK+LVH FEG SRS T+VLAYLM
Sbjct: 758 SITDDEDSNIESIFQEALDFIKHGEETGGKILVHCFEGRSRSATVVLAYLM 808

[Close]

BLAST of MC06g0014.1 vs. ExPASy Swiss-Prot
Match: Q16690 (Dual specificity protein phosphatase 5 OS=Homo sapiens OX=9606 GN=DUSP5 PE=1 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 4.3e-08
Identity = 31/52 (59.62%), Postives = 36/52 (69.23%), Query Frame = 0


Query: 1   INVKDLLGGNISSIFEEACDFIDDVESKGGKVLVHWFEGTSRSVTLVLAYLM 53
           I V+D    +ISS F+EA DFID V  KGGKVLVH   G SRS T+ +AYLM
Sbjct: 228 IPVEDSHTADISSHFQEAIDFIDCVREKGGKVLVHCEAGISRSPTICMAYLM 279

[Close]

BLAST of MC06g0014.1 vs. ExPASy Swiss-Prot
Match: Q9ZR37 (Dual specificity protein phosphatase 1 OS=Arabidopsis thaliana OX=3702 GN=DSPTP1 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 5.6e-08
Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 1   INVKDLLGGNISSIFEEACDFIDDVESKGGKVLVHWFEGTSRSVTLVLAYLM 53
           + V D    N+   F+E  DFID+ + +GG VLVH F G SRSVT+V+AYLM
Sbjct: 100 VRVVDKEDTNLEMYFDECVDFIDEAKRQGGSVLVHCFVGKSRSVTIVVAYLM 151

[Close]

BLAST of MC06g0014.1 vs. ExPASy Swiss-Prot
Match: O54838 (Dual specificity protein phosphatase 5 OS=Rattus norvegicus OX=10116 GN=Dusp5 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 9.6e-08
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 0


Query: 1   INVKDLLGGNISSIFEEACDFIDDVESKGGKVLVHWFEGTSRSVTLVLAYLM 53
           I V+D    +ISS F+EA DFID V  +GGKVLVH   G SRS T+ +AYLM
Sbjct: 228 IPVEDSHTADISSHFQEAIDFIDCVREEGGKVLVHCEAGVSRSPTICMAYLM 279

[Close]

BLAST of MC06g0014.1 vs. ExPASy Swiss-Prot
Match: Q91790 (Dual specificity protein phosphatase 1-A OS=Xenopus laevis OX=8355 GN=dusp1-a PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.6e-07
Identity = 29/52 (55.77%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 1   INVKDLLGGNISSIFEEACDFIDDVESKGGKVLVHWFEGTSRSVTLVLAYLM 53
           I V+D    +ISS F EA DFID V++ GG+V VH   G SRS T+ LAYLM
Sbjct: 225 IPVEDSHKADISSWFNEAIDFIDSVKNSGGRVFVHCQAGISRSATICLAYLM 276

[Close]

BLAST of MC06g0014.1 vs. NCBI nr
Match: XP_022158997.1 (dual specificity protein phosphatase PHS1 [Momordica charantia])

HSP 1 Score: 79.3 bits (194), Expect = 1.63e-15
Identity = 39/51 (76.47%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 2   NVKDLLGGNISSIFEEACDFIDDVESKGGKVLVHWFEGTSRSVTLVLAYLM 52
           ++ D    NISSIFEEACDFIDD+ESK GKVLVH FEG SRS TLVLAYLM
Sbjct: 754 SISDNEDSNISSIFEEACDFIDDIESKSGKVLVHCFEGRSRSATLVLAYLM 804

[Close]

BLAST of MC06g0014.1 vs. NCBI nr
Match: KAA0057730.1 (dual specificity protein phosphatase PHS1 isoform X2 [Cucumis melo var. makuwa] >TYJ98415.1 dual specificity protein phosphatase PHS1 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 5.44e-15
Identity = 39/51 (76.47%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 2  NVKDLLGGNISSIFEEACDFIDDVESKGGKVLVHWFEGTSRSVTLVLAYLM 52
          N+ D    NISSIFEEA DFID VE KGGKVLVH FEG SRS TLVLAYLM
Sbjct: 37 NISDDEDSNISSIFEEASDFIDGVEGKGGKVLVHCFEGKSRSATLVLAYLM 87

[Close]

BLAST of MC06g0014.1 vs. NCBI nr
Match: XP_022987149.1 (dual specificity protein phosphatase PHS1 [Cucurbita maxima])

HSP 1 Score: 75.9 bits (185), Expect = 2.71e-14
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 2   NVKDLLGGNISSIFEEACDFIDDVESKGGKVLVHWFEGTSRSVTLVLAYLM 52
           ++ D    NISSIFEEA DF+DDVE KGGKVLVH FEG SRS TLVLAYLM
Sbjct: 751 SISDNEDSNISSIFEEASDFVDDVERKGGKVLVHCFEGKSRSATLVLAYLM 801

[Close]

BLAST of MC06g0014.1 vs. NCBI nr
Match: XP_023516562.1 (dual specificity protein phosphatase PHS1 [Cucurbita pepo subsp. pepo] >XP_023516563.1 dual specificity protein phosphatase PHS1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 75.9 bits (185), Expect = 2.71e-14
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 2   NVKDLLGGNISSIFEEACDFIDDVESKGGKVLVHWFEGTSRSVTLVLAYLM 52
           ++ D    NISSIFEEA DF+DDVE KGGKVLVH FEG SRS TLVLAYLM
Sbjct: 751 SISDNEDSNISSIFEEASDFVDDVERKGGKVLVHCFEGKSRSATLVLAYLM 801

[Close]

BLAST of MC06g0014.1 vs. NCBI nr
Match: XP_022921604.1 (dual specificity protein phosphatase PHS1 [Cucurbita moschata])

HSP 1 Score: 75.9 bits (185), Expect = 2.71e-14
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 2   NVKDLLGGNISSIFEEACDFIDDVESKGGKVLVHWFEGTSRSVTLVLAYLM 52
           ++ D    NISSIFEEA DF+DDVE KGGKVLVH FEG SRS TLVLAYLM
Sbjct: 751 SISDNEDSNISSIFEEASDFVDDVERKGGKVLVHCFEGKSRSATLVLAYLM 801

[Close]

BLAST of MC06g0014.1 vs. ExPASy TrEMBL
Match: A0A6J1DYL9 (dual specificity protein phosphatase PHS1 OS=Momordica charantia OX=3673 GN=LOC111025440 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 7.91e-16
Identity = 39/51 (76.47%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 2   NVKDLLGGNISSIFEEACDFIDDVESKGGKVLVHWFEGTSRSVTLVLAYLM 52
           ++ D    NISSIFEEACDFIDD+ESK GKVLVH FEG SRS TLVLAYLM
Sbjct: 754 SISDNEDSNISSIFEEACDFIDDIESKSGKVLVHCFEGRSRSATLVLAYLM 804

[Close]

BLAST of MC06g0014.1 vs. ExPASy TrEMBL
Match: A0A5A7URI3 (Dual specificity protein phosphatase PHS1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00110 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.63e-15
Identity = 39/51 (76.47%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 2  NVKDLLGGNISSIFEEACDFIDDVESKGGKVLVHWFEGTSRSVTLVLAYLM 52
          N+ D    NISSIFEEA DFID VE KGGKVLVH FEG SRS TLVLAYLM
Sbjct: 37 NISDDEDSNISSIFEEASDFIDGVEGKGGKVLVHCFEGKSRSATLVLAYLM 87

[Close]

BLAST of MC06g0014.1 vs. ExPASy TrEMBL
Match: A0A6J1JI25 (dual specificity protein phosphatase PHS1 OS=Cucurbita maxima OX=3661 GN=LOC111484787 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.31e-14
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 2   NVKDLLGGNISSIFEEACDFIDDVESKGGKVLVHWFEGTSRSVTLVLAYLM 52
           ++ D    NISSIFEEA DF+DDVE KGGKVLVH FEG SRS TLVLAYLM
Sbjct: 751 SISDNEDSNISSIFEEASDFVDDVERKGGKVLVHCFEGKSRSATLVLAYLM 801

[Close]

BLAST of MC06g0014.1 vs. ExPASy TrEMBL
Match: A0A6J1E0Y9 (dual specificity protein phosphatase PHS1 OS=Cucurbita moschata OX=3662 GN=LOC111429819 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.31e-14
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 2   NVKDLLGGNISSIFEEACDFIDDVESKGGKVLVHWFEGTSRSVTLVLAYLM 52
           ++ D    NISSIFEEA DF+DDVE KGGKVLVH FEG SRS TLVLAYLM
Sbjct: 751 SISDNEDSNISSIFEEASDFVDDVERKGGKVLVHCFEGKSRSATLVLAYLM 801

[Close]

BLAST of MC06g0014.1 vs. ExPASy TrEMBL
Match: B9RA78 (Phosphoprotein phosphatase, putative OS=Ricinus communis OX=3988 GN=RCOM_1504160 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.56e-14
Identity = 39/51 (76.47%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 2   NVKDLLGGNISSIFEEACDFIDDVESKGGKVLVHWFEGTSRSVTLVLAYLM 52
           ++ D    NISSIFEEA DFIDDVESKG KVLVH FEG SRS TLVLAYLM
Sbjct: 766 SICDSEDSNISSIFEEASDFIDDVESKGRKVLVHCFEGKSRSATLVLAYLM 816

[Close]

BLAST of MC06g0014.1 vs. TAIR 10
Match: AT5G23720.1 (dual specificity protein phosphatase family protein )

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-10
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 2   NVKDLLGGNISSIFEEACDFIDDVESKGGKVLVHWFEGTSRSVTLVLAYLM 53
           ++ D    NI SIF+EA DFI   E  GGK+LVH FEG SRS T+VLAYLM
Sbjct: 758 SITDDEDSNIESIFQEALDFIKHGEETGGKILVHCFEGRSRSATVVLAYLM 808

[Close]

BLAST of MC06g0014.1 vs. TAIR 10
Match: AT5G23720.2 (dual specificity protein phosphatase family protein )

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-10
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 2   NVKDLLGGNISSIFEEACDFIDDVESKGGKVLVHWFEGTSRSVTLVLAYLM 53
           ++ D    NI SIF+EA DFI   E  GGK+LVH FEG SRS T+VLAYLM
Sbjct: 674 SITDDEDSNIESIFQEALDFIKHGEETGGKILVHCFEGRSRSATVVLAYLM 724

[Close]

BLAST of MC06g0014.1 vs. TAIR 10
Match: AT5G23720.3 (dual specificity protein phosphatase family protein )

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-10
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 2   NVKDLLGGNISSIFEEACDFIDDVESKGGKVLVHWFEGTSRSVTLVLAYLM 53
           ++ D    NI SIF+EA DFI   E  GGK+LVH FEG SRS T+VLAYLM
Sbjct: 749 SITDDEDSNIESIFQEALDFIKHGEETGGKILVHCFEGRSRSATVVLAYLM 799

[Close]

BLAST of MC06g0014.1 vs. TAIR 10
Match: AT3G23610.1 (dual specificity protein phosphatase 1 )

HSP 1 Score: 57.4 bits (137), Expect = 4.0e-09
Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 1   INVKDLLGGNISSIFEEACDFIDDVESKGGKVLVHWFEGTSRSVTLVLAYLM 53
           + V D    N+   F+E  DFID+ + +GG VLVH F G SRSVT+V+AYLM
Sbjct: 100 VRVVDKEDTNLEMYFDECVDFIDEAKRQGGSVLVHCFVGKSRSVTIVVAYLM 151

[Close]

BLAST of MC06g0014.1 vs. TAIR 10
Match: AT3G23610.2 (dual specificity protein phosphatase 1 )

HSP 1 Score: 57.4 bits (137), Expect = 4.0e-09
Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 1   INVKDLLGGNISSIFEEACDFIDDVESKGGKVLVHWFEGTSRSVTLVLAYLM 53
           + V D    N+   F+E  DFID+ + +GG VLVH F G SRSVT+V+AYLM
Sbjct: 100 VRVVDKEDTNLEMYFDECVDFIDEAKRQGGSVLVHCFVGKSRSVTIVVAYLM 151

The following BLAST results are available for this feature:

BLAST of MC06g0014.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q75QN6	1.8e-09	60.78	Dual specificity protein phosphatase PHS1 OS=Arabidopsis thaliana OX=3702 GN=PHS...	[more]
Q16690	4.3e-08	59.62	Dual specificity protein phosphatase 5 OS=Homo sapiens OX=9606 GN=DUSP5 PE=1 SV=...	[more]
Q9ZR37	5.6e-08	51.92	Dual specificity protein phosphatase 1 OS=Arabidopsis thaliana OX=3702 GN=DSPTP1...	[more]
O54838	9.6e-08	57.69	Dual specificity protein phosphatase 5 OS=Rattus norvegicus OX=10116 GN=Dusp5 PE...	[more]
Q91790	1.6e-07	55.77	Dual specificity protein phosphatase 1-A OS=Xenopus laevis OX=8355 GN=dusp1-a PE...	[more]

BLAST of MC06g0014.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158997.1	1.63e-15	76.47	dual specificity protein phosphatase PHS1 [Momordica charantia]	[more]
KAA0057730.1	5.44e-15	76.47	dual specificity protein phosphatase PHS1 isoform X2 [Cucumis melo var. makuwa] ...	[more]
XP_022987149.1	2.71e-14	74.51	dual specificity protein phosphatase PHS1 [Cucurbita maxima]	[more]
XP_023516562.1	2.71e-14	74.51	dual specificity protein phosphatase PHS1 [Cucurbita pepo subsp. pepo] >XP_02351...	[more]
XP_022921604.1	2.71e-14	74.51	dual specificity protein phosphatase PHS1 [Cucurbita moschata]	[more]

BLAST of MC06g0014.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DYL9	7.91e-16	76.47	dual specificity protein phosphatase PHS1 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A5A7URI3	2.63e-15	76.47	Dual specificity protein phosphatase PHS1 isoform X2 OS=Cucumis melo var. makuwa...	[more]
A0A6J1JI25	1.31e-14	74.51	dual specificity protein phosphatase PHS1 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1E0Y9	1.31e-14	74.51	dual specificity protein phosphatase PHS1 OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
B9RA78	4.56e-14	76.47	Phosphoprotein phosphatase, putative OS=Ricinus communis OX=3988 GN=RCOM_1504160...	[more]

BLAST of MC06g0014.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23720.1	1.2e-10	60.78	dual specificity protein phosphatase family protein	[more]
AT5G23720.2	1.2e-10	60.78	dual specificity protein phosphatase family protein	[more]
AT5G23720.3	1.2e-10	60.78	dual specificity protein phosphatase family protein	[more]
AT3G23610.1	4.0e-09	51.92	dual specificity protein phosphatase 1	[more]
AT3G23610.2	4.0e-09	51.92	dual specificity protein phosphatase 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029021	Protein-tyrosine phosphatase-like	GENE3D	3.90.190.10	Protein tyrosine phosphatase superfamily	coord: 1..52 e-value: 1.0E-17 score: 66.0
IPR029021	Protein-tyrosine phosphatase-like	SUPERFAMILY	52799	(Phosphotyrosine protein) phosphatases II	coord: 3..52
IPR000340	Dual specificity phosphatase, catalytic domain	PFAM	PF00782	DSPc	coord: 3..52 e-value: 5.0E-14 score: 52.3
IPR035010	Dual specificity protein phosphatase PHS1	PANTHER	PTHR47100	DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1	coord: 2..52
None	No IPR available	PANTHER	PTHR47100:SF5	DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1	coord: 2..52
None	No IPR available	CDD	cd14498	DSP	coord: 1..52 e-value: 4.74334E-21 score: 76.8159

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC06g0014	MC06g0014	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC06g0014.1-cds	MC06g0014.1-cds-MC06:129297..129452	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC06g0014.1	MC06g0014.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043622	cortical microtubule organization
biological_process	GO:0016311	dephosphorylation
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0035335	peptidyl-tyrosine dephosphorylation
biological_process	GO:0016310	phosphorylation
molecular_function	GO:0004721	phosphoprotein phosphatase activity
molecular_function	GO:0008138	protein tyrosine/serine/threonine phosphatase activity
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0004722	protein serine/threonine phosphatase activity
molecular_function	GO:0004725	protein tyrosine phosphatase activity