MC05g_new0283.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC05g_new0283.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC05: 14183774 .. 14184601 (-)
Sequence length	264
RNA-Seq Expression	MC05g_new0283.1
Synteny	MC05g_new0283.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTGCGCAAAATGGTCGAGTTGAGCGTAAACATCGTCATATTGTTGAGACCGGTCTCACTTTGCTCGCTCAAGCTTCCATGCCTCTAAGTTTTTGGTGGGAGGCCTTCCTAACATCAACCTTATTAATCAATGGTCTTCCTTCCCCTCTGCTTAATGGTAAGTCTCCAATGGAGTTATTGATACAACGAGGTCTTAACGTCTCCGAGTTTAGAATATTTGGGTGTGCATGCTATCCCTTTTTACGCCCTTACCATACTCATAAGTTTCAATTTCGAACTAACAAGTGTGTTTATCTTGGTCCAAGTCCAGCTCATAAGGGTCATAAATGTCTCAACTCATCGGAAGAGTCTTCATCTCACGACATGTTCAATTCAATGAAGGTGATTATCCATTTGCTTCTGGATTTGGCCTTCAACAATCCACTATGTCTGACAATTCTTTATCTCATTCCACTGCTGCTCCAAACCTATACACGTGGTTCGGAAGCCTGCCTACTCTTAAACCTGCTACTCACCCACCATCCAACACCCCTCACCCATGCCCACCAAATTTGTCTATCACCCATAACTCACAGCCTCCTAGATCCTAGGCCCCAACAACCTCTCCAACCTCACCTCCCCAATCACGACCTAATAATCTAGAATTCCTCATAAACAGTCCCCTAAGCCATGAACCTTTACCAATTGACACATCTCTTATTTCTAGCCCATCCCATCAGCTCCCTAGTACGATTTCAGCTGACTAACATGCGTTCTCCACCCCCTCCAATCCACCATCTTTCCCTCTATCTTCACTACCCACACCTGAAGCATCTGACCTAAATATAC

mRNA sequence

ATGTCTCAACTCATCGGAAGAGTCTTCATCTCACGACATGTTCAATTCAATGAAGGTGATTATCCATTTGCTTCTGGATTTGGCCTTCAACAATCCACTATGTCTGACAATTCTTTATCTCATTCCACTGCTGCTCCAAACCTATACACGTGGTTCGGAAGCCTGCCTACTCTTAAACCTGCTACTCACCCACCATCCAACACCCCTCACCCATGCCCACCAAATTTGTCTATCACCCATAACTCACAGCCTCCTAGATCCTAG

Coding sequence (CDS)

ATGTCTCAACTCATCGGAAGAGTCTTCATCTCACGACATGTTCAATTCAATGAAGGTGATTATCCATTTGCTTCTGGATTTGGCCTTCAACAATCCACTATGTCTGACAATTCTTTATCTCATTCCACTGCTGCTCCAAACCTATACACGTGGTTCGGAAGCCTGCCTACTCTTAAACCTGCTACTCACCCACCATCCAACACCCCTCACCCATGCCCACCAAATTTGTCTATCACCCATAACTCACAGCCTCCTAGATCCTAG

Protein sequence

MSQLIGRVFISRHVQFNEGDYPFASGFGLQQSTMSDNSLSHSTAAPNLYTWFGSLPTLKPATHPPSNTPHPCPPNLSITHNSQPPRS

Homology

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BLAST of MC05g_new0283.1 vs. ExPASy TrEMBL
Match: A0A803PR45 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 2.96e-04
Identity = 29/66 (43.94%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 6   GRVFISRHVQFNEGDYPFASGFGLQQSTMSDNSLSHSTAAPNLYTWFGSLPTLKPATHPP 65
           GR++ISRHVQFNE D+PF++GF       SD ++S   A      WF  LP  +P +   
Sbjct: 233 GRLYISRHVQFNERDFPFSAGFLNNYRQESDVTISSPDA------WF-ELPIQQPDSTQT 291

Query: 66  SNTPHP 71
           S+TP P
Sbjct: 293 SHTPEP 291

The following BLAST results are available for this feature:

BLAST of MC05g_new0283.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC05g_new0283.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC05g_new0283.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A803PR45	2.96e-04	43.94	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of MC05g_new0283.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..87

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC05g_new0283	MC05g_new0283	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC05g_new0283.1-cds	MC05g_new0283.1-cds-MC05:14184012..14184275	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC05g_new0283.1	MC05g_new0283.1-protein	polypeptide