MC05g0558.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC05g0558.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	EF-hand calcium-binding domain-containing protein 4A
Location	MC05: 4245661 .. 4246092 (-)
Sequence length	432
RNA-Seq Expression	MC05g0558.1
Synteny	MC05g0558.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGGGGCTGGGCGTTTTCAGGCTCGGGAGGTGCTTCGACGGGTGCGTCGAGCACGGTGGAGCGTCGGGGTTGGGGACGAGAATATGGAATATGAGCGACAGGGCGGTCGAGGTGCAGATAAGGGTAGGATCAATATTGAAAAAGGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGCAAGAGCATTTACAAAGCATACATGCCGGGAACAGGGAGGAGTATGAAGAGCTTGCTTTATTACTACGATCAAGCTTCTCAACCTTATGTTTGGATACATGAAACCGGGGGTGATTCCATCAGAATGGTGAAGCAGCAGTACATTAGTCTTGAGGATCTAAGGGAGTTTTCCGAGATCAGAATCTTTCGAGATCATCAGCGTGGCTGCGTATCCATTCGCAAGAAACCGAGGCCCGATTTTTGC

mRNA sequence

ATGCCGGGGCTGGGCGTTTTCAGGCTCGGGAGGTGCTTCGACGGGTGCGTCGAGCACGGTGGAGCGTCGGGGTTGGGGACGAGAATATGGAATATGAGCGACAGGGCGGTCGAGGTGCAGATAAGGGTAGGATCAATATTGAAAAAGGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGCAAGAGCATTTACAAAGCATACATGCCGGGAACAGGGAGGAGTATGAAGAGCTTGCTTTATTACTACGATCAAGCTTCTCAACCTTATGTTTGGATACATGAAACCGGGGGTGATTCCATCAGAATGGTGAAGCAGCAGTACATTAGTCTTGAGGATCTAAGGGAGTTTTCCGAGATCAGAATCTTTCGAGATCATCAGCGTGGCTGCGTATCCATTCGCAAGAAACCGAGGCCCGATTTTTGC

Coding sequence (CDS)

ATGCCGGGGCTGGGCGTTTTCAGGCTCGGGAGGTGCTTCGACGGGTGCGTCGAGCACGGTGGAGCGTCGGGGTTGGGGACGAGAATATGGAATATGAGCGACAGGGCGGTCGAGGTGCAGATAAGGGTAGGATCAATATTGAAAAAGGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGCAAGAGCATTTACAAAGCATACATGCCGGGAACAGGGAGGAGTATGAAGAGCTTGCTTTATTACTACGATCAAGCTTCTCAACCTTATGTTTGGATACATGAAACCGGGGGTGATTCCATCAGAATGGTGAAGCAGCAGTACATTAGTCTTGAGGATCTAAGGGAGTTTTCCGAGATCAGAATCTTTCGAGATCATCAGCGTGGCTGCGTATCCATTCGCAAGAAACCGAGGCCCGATTTTTGC

Protein sequence

MPGLGVFRLGRCFDGCVEHGGASGLGTRIWNMSDRAVEVQIRVGSILKKVHSLKPGCSKRLKCKSIYKAYMPGTGRSMKSLLYYYDQASQPYVWIHETGGDSIRMVKQQYISLEDLREFSEIRIFRDHQRGCVSIRKKPRPDFC

Homology

[Close]

BLAST of MC05g0558.1 vs. NCBI nr
Match: XP_022138034.1 (uncharacterized protein LOC111009291 [Momordica charantia])

HSP 1 Score: 300 bits (768), Expect = 8.20e-103
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MPGLGVFRLGRCFDGCVEHGGASGLGTRIWNMSDRAVEVQIRVGSILKKVHSLKPGCSKR 60
           MPGLGVFRLGRCFDGCVEHGGASGLGTRIWNMSDRAVEVQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGLGVFRLGRCFDGCVEHGGASGLGTRIWNMSDRAVEVQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGTGRSMKSLLYYYDQASQPYVWIHETGGDSIRMVKQQYISLEDLREFS 120
           LKCKSIYKAYMPGTGRSMKSLLYYYDQASQPYVWIHETGGDSIRMVKQQYISLEDLREFS
Sbjct: 61  LKCKSIYKAYMPGTGRSMKSLLYYYDQASQPYVWIHETGGDSIRMVKQQYISLEDLREFS 120

Query: 121 EIRIFRDHQRGCVSIRKKPRPDFC 144
           EIRIFRDHQRGCVSIRKKPRPDFC
Sbjct: 121 EIRIFRDHQRGCVSIRKKPRPDFC 144

[Close]

BLAST of MC05g0558.1 vs. NCBI nr
Match: XP_008438723.1 (PREDICTED: uncharacterized protein LOC103483746 [Cucumis melo] >KAA0049398.1 uncharacterized protein E6C27_scaffold171G006430 [Cucumis melo var. makuwa] >TYK17161.1 uncharacterized protein E5676_scaffold434G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 262 bits (669), Expect = 9.64e-88
Identity = 123/144 (85.42%), Postives = 133/144 (92.36%), Query Frame = 0


Query: 1   MPGLGVFRLGRCFDGCVEHGGASGLGTRIWNMSDRAVEVQIRVGSILKKVHSLKPGCSKR 60
           MPG GVF LG CFDGC +H  ASG GTR+WN+SDR VE+QIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGTGRSMKSLLYYYDQASQPYVWIHETGGDSIRMVKQQYISLEDLREFS 120
           LKCKSIYKAYMPG  RSMKSLLYYYD+A QPYVWIHE+GGDS+RMVKQQY+SLEDLREFS
Sbjct: 61  LKCKSIYKAYMPG--RSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFS 120

Query: 121 EIRIFRDHQRGCVSIRKKPRPDFC 144
           EIRIFRDHQRGC+S+RKKPRPDFC
Sbjct: 121 EIRIFRDHQRGCISVRKKPRPDFC 142

[Close]

BLAST of MC05g0558.1 vs. NCBI nr
Match: XP_011650993.1 (uncharacterized protein LOC105434839 [Cucumis sativus] >KGN57027.1 hypothetical protein Csa_009946 [Cucumis sativus])

HSP 1 Score: 259 bits (662), Expect = 1.13e-86
Identity = 123/144 (85.42%), Postives = 132/144 (91.67%), Query Frame = 0


Query: 1   MPGLGVFRLGRCFDGCVEHGGASGLGTRIWNMSDRAVEVQIRVGSILKKVHSLKPGCSKR 60
           MPG GVF LG CFDGC +H  ASG GTRIWN+SDR VE+QIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGTGRSMKSLLYYYDQASQPYVWIHETGGDSIRMVKQQYISLEDLREFS 120
           LKCKSIYKAYMPG  RSMKSLLYYYD+A QPYVWIHE+GGDS+RMVKQQY+SLEDLREFS
Sbjct: 61  LKCKSIYKAYMPG--RSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFS 120

Query: 121 EIRIFRDHQRGCVSIRKKPRPDFC 144
           EIRIFRDHQRGC+S+RKK RPDFC
Sbjct: 121 EIRIFRDHQRGCISVRKKQRPDFC 142

[Close]

BLAST of MC05g0558.1 vs. NCBI nr
Match: XP_038875149.1 (uncharacterized protein LOC120067683 [Benincasa hispida])

HSP 1 Score: 259 bits (661), Expect = 1.60e-86
Identity = 123/144 (85.42%), Postives = 132/144 (91.67%), Query Frame = 0


Query: 1   MPGLGVFRLGRCFDGCVEHGGASGLGTRIWNMSDRAVEVQIRVGSILKKVHSLKPGCSKR 60
           MPG GVF LG CFDGC +H  ASG GTRIWN+SDR VE+QIRVGSILK+VH+LKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKRVHNLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGTGRSMKSLLYYYDQASQPYVWIHETGGDSIRMVKQQYISLEDLREFS 120
           LKCKSIYKAYMPG  RSMKSLLYYYD+A QPYVWIHE+GGDS+RMVKQQYISLEDLREFS
Sbjct: 61  LKCKSIYKAYMPG--RSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFS 120

Query: 121 EIRIFRDHQRGCVSIRKKPRPDFC 144
           EIRIFRDHQRGCVS+ KKPRPDFC
Sbjct: 121 EIRIFRDHQRGCVSVHKKPRPDFC 142

[Close]

BLAST of MC05g0558.1 vs. NCBI nr
Match: XP_022936946.1 (uncharacterized protein LOC111443378 [Cucurbita moschata] >KAG6597467.1 hypothetical protein SDJN03_10647, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028926.1 hypothetical protein SDJN02_10109, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 255 bits (651), Expect = 5.36e-85
Identity = 123/144 (85.42%), Postives = 131/144 (90.97%), Query Frame = 0


Query: 1   MPGLGVFRLGRCFDGCVEHGGASGLGTRIWNMSDRAVEVQIRVGSILKKVHSLKPGCSKR 60
           MPG GVF LG CFDGC +H  ASG GTRIWN+SDR VE+QIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGTGRSMKSLLYYYDQASQPYVWIHETGGDSIRMVKQQYISLEDLREFS 120
           LKCKSIYKAYMPG  RSMKSLLYYYD+A QPYVWIHE+GGDS+RMVKQQ+ISLEDLREFS
Sbjct: 61  LKCKSIYKAYMPG--RSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFS 120

Query: 121 EIRIFRDHQRGCVSIRKKPRPDFC 144
           EIRIFRDHQRGCVS+RKKPR  FC
Sbjct: 121 EIRIFRDHQRGCVSVRKKPRLGFC 142

[Close]

BLAST of MC05g0558.1 vs. ExPASy TrEMBL
Match: A0A6J1C8Y4 (uncharacterized protein LOC111009291 OS=Momordica charantia OX=3673 GN=LOC111009291 PE=4 SV=1)

HSP 1 Score: 300 bits (768), Expect = 3.97e-103
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MPGLGVFRLGRCFDGCVEHGGASGLGTRIWNMSDRAVEVQIRVGSILKKVHSLKPGCSKR 60
           MPGLGVFRLGRCFDGCVEHGGASGLGTRIWNMSDRAVEVQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGLGVFRLGRCFDGCVEHGGASGLGTRIWNMSDRAVEVQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGTGRSMKSLLYYYDQASQPYVWIHETGGDSIRMVKQQYISLEDLREFS 120
           LKCKSIYKAYMPGTGRSMKSLLYYYDQASQPYVWIHETGGDSIRMVKQQYISLEDLREFS
Sbjct: 61  LKCKSIYKAYMPGTGRSMKSLLYYYDQASQPYVWIHETGGDSIRMVKQQYISLEDLREFS 120

Query: 121 EIRIFRDHQRGCVSIRKKPRPDFC 144
           EIRIFRDHQRGCVSIRKKPRPDFC
Sbjct: 121 EIRIFRDHQRGCVSIRKKPRPDFC 144

[Close]

BLAST of MC05g0558.1 vs. ExPASy TrEMBL
Match: A0A5A7U2C9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00050 PE=4 SV=1)

HSP 1 Score: 262 bits (669), Expect = 4.67e-88
Identity = 123/144 (85.42%), Postives = 133/144 (92.36%), Query Frame = 0


Query: 1   MPGLGVFRLGRCFDGCVEHGGASGLGTRIWNMSDRAVEVQIRVGSILKKVHSLKPGCSKR 60
           MPG GVF LG CFDGC +H  ASG GTR+WN+SDR VE+QIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGTGRSMKSLLYYYDQASQPYVWIHETGGDSIRMVKQQYISLEDLREFS 120
           LKCKSIYKAYMPG  RSMKSLLYYYD+A QPYVWIHE+GGDS+RMVKQQY+SLEDLREFS
Sbjct: 61  LKCKSIYKAYMPG--RSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFS 120

Query: 121 EIRIFRDHQRGCVSIRKKPRPDFC 144
           EIRIFRDHQRGC+S+RKKPRPDFC
Sbjct: 121 EIRIFRDHQRGCISVRKKPRPDFC 142

[Close]

BLAST of MC05g0558.1 vs. ExPASy TrEMBL
Match: A0A1S3AWR3 (uncharacterized protein LOC103483746 OS=Cucumis melo OX=3656 GN=LOC103483746 PE=4 SV=1)

HSP 1 Score: 262 bits (669), Expect = 4.67e-88
Identity = 123/144 (85.42%), Postives = 133/144 (92.36%), Query Frame = 0


Query: 1   MPGLGVFRLGRCFDGCVEHGGASGLGTRIWNMSDRAVEVQIRVGSILKKVHSLKPGCSKR 60
           MPG GVF LG CFDGC +H  ASG GTR+WN+SDR VE+QIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGTGRSMKSLLYYYDQASQPYVWIHETGGDSIRMVKQQYISLEDLREFS 120
           LKCKSIYKAYMPG  RSMKSLLYYYD+A QPYVWIHE+GGDS+RMVKQQY+SLEDLREFS
Sbjct: 61  LKCKSIYKAYMPG--RSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFS 120

Query: 121 EIRIFRDHQRGCVSIRKKPRPDFC 144
           EIRIFRDHQRGC+S+RKKPRPDFC
Sbjct: 121 EIRIFRDHQRGCISVRKKPRPDFC 142

[Close]

BLAST of MC05g0558.1 vs. ExPASy TrEMBL
Match: A0A0A0L8V0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G150060 PE=4 SV=1)

HSP 1 Score: 259 bits (662), Expect = 5.45e-87
Identity = 123/144 (85.42%), Postives = 132/144 (91.67%), Query Frame = 0


Query: 1   MPGLGVFRLGRCFDGCVEHGGASGLGTRIWNMSDRAVEVQIRVGSILKKVHSLKPGCSKR 60
           MPG GVF LG CFDGC +H  ASG GTRIWN+SDR VE+QIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGTGRSMKSLLYYYDQASQPYVWIHETGGDSIRMVKQQYISLEDLREFS 120
           LKCKSIYKAYMPG  RSMKSLLYYYD+A QPYVWIHE+GGDS+RMVKQQY+SLEDLREFS
Sbjct: 61  LKCKSIYKAYMPG--RSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFS 120

Query: 121 EIRIFRDHQRGCVSIRKKPRPDFC 144
           EIRIFRDHQRGC+S+RKK RPDFC
Sbjct: 121 EIRIFRDHQRGCISVRKKQRPDFC 142

[Close]

BLAST of MC05g0558.1 vs. ExPASy TrEMBL
Match: A0A6J1F8W2 (uncharacterized protein LOC111443378 OS=Cucurbita moschata OX=3662 GN=LOC111443378 PE=4 SV=1)

HSP 1 Score: 255 bits (651), Expect = 2.59e-85
Identity = 123/144 (85.42%), Postives = 131/144 (90.97%), Query Frame = 0


Query: 1   MPGLGVFRLGRCFDGCVEHGGASGLGTRIWNMSDRAVEVQIRVGSILKKVHSLKPGCSKR 60
           MPG GVF LG CFDGC +H  ASG GTRIWN+SDR VE+QIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGTGRSMKSLLYYYDQASQPYVWIHETGGDSIRMVKQQYISLEDLREFS 120
           LKCKSIYKAYMPG  RSMKSLLYYYD+A QPYVWIHE+GGDS+RMVKQQ+ISLEDLREFS
Sbjct: 61  LKCKSIYKAYMPG--RSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFS 120

Query: 121 EIRIFRDHQRGCVSIRKKPRPDFC 144
           EIRIFRDHQRGCVS+RKKPR  FC
Sbjct: 121 EIRIFRDHQRGCVSVRKKPRLGFC 142

[Close]

BLAST of MC05g0558.1 vs. TAIR 10
Match: AT3G06145.1 (unknown protein; Has 15 Blast hits to 15 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 147.9 bits (372), Expect = 6.3e-36
Identity = 74/138 (53.62%), Postives = 98/138 (71.01%), Query Frame = 0


Query: 9   LGRCFDGCVEHG-----GASGLGTRIWNMSDRAVEVQIRVGSILKKVHSLKPGCSKRLKC 68
           L +C+ GC +         +   TR WN+SDR VE+QIRVGSILK+VH+LKPG SK+L+ 
Sbjct: 28  LRQCYGGCGDRTHLLPCSIATTSTRFWNLSDRPVELQIRVGSILKRVHTLKPGRSKKLRH 87

Query: 69  KSIYKAYMPG-TGRSMKSLLYYYDQASQPYVWIHETGGDSIRMVKQQYISLEDLREFSEI 128
           +SI++AY+    GR       YYD    PYVW+HETG D  +MVKQQY+SLEDLR++SEI
Sbjct: 88  RSIHRAYVDDQEGRRW----LYYDDTCLPYVWVHETGTDLSKMVKQQYVSLEDLRDYSEI 147

Query: 129 RIFRDHQRGCVSIRKKPR 141
           R+F+D QRGCV++ K+ R
Sbjct: 148 RVFKDLQRGCVAVEKRDR 161

The following BLAST results are available for this feature:

BLAST of MC05g0558.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC05g0558.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138034.1	8.20e-103	100.00	uncharacterized protein LOC111009291 [Momordica charantia]	[more]
XP_008438723.1	9.64e-88	85.42	PREDICTED: uncharacterized protein LOC103483746 [Cucumis melo] >KAA0049398.1 unc...	[more]
XP_011650993.1	1.13e-86	85.42	uncharacterized protein LOC105434839 [Cucumis sativus] >KGN57027.1 hypothetical ...	[more]
XP_038875149.1	1.60e-86	85.42	uncharacterized protein LOC120067683 [Benincasa hispida]	[more]
XP_022936946.1	5.36e-85	85.42	uncharacterized protein LOC111443378 [Cucurbita moschata] >KAG6597467.1 hypothet...	[more]

BLAST of MC05g0558.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C8Y4	3.97e-103	100.00	uncharacterized protein LOC111009291 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A5A7U2C9	4.67e-88	85.42	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AWR3	4.67e-88	85.42	uncharacterized protein LOC103483746 OS=Cucumis melo OX=3656 GN=LOC103483746 PE=...	[more]
A0A0A0L8V0	5.45e-87	85.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G150060 PE=4 SV=1	[more]
A0A6J1F8W2	2.59e-85	85.42	uncharacterized protein LOC111443378 OS=Cucurbita moschata OX=3662 GN=LOC1114433...	[more]

BLAST of MC05g0558.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06145.1	6.3e-36	53.62	unknown protein; Has 15 Blast hits to 15 proteins in 7 species: Archae - 0; Bact...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC05g0558	MC05g0558	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC05g0558.1-cds	MC05g0558.1-cds-MC05:4245661..4246092	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC05g0558.1	MC05g0558.1-protein	polypeptide