MC04g_new0095.1 (mRNA) Bitter gourd (Dali-11) v1

Overview
NameMC04g_new0095.1
TypemRNA
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC04: 3293125 .. 3294846 (+)
Sequence length168
RNA-Seq ExpressionMC04g_new0095.1
SyntenyMC04g_new0095.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAACATTCCAAAGTTTTGGCGGAGCACAGGGTTTGATGCAATGAAGAAAGAGATCGAAGAAACAAACAAATCCCATTACCCATTTCTTTCTGGGATTGCAAGAACAAAATCACTGCAACATATAACGCAAAACAATCCCTCCATTAAGCTTTCTTGTAAGCAGCAAACATAAACAGAAATCGAAGTTTCAGACTGATAATCGAGACGAGAAAATATGCTCTCAGACGGCCAGATTCCTCGCCAAAATCCCTTCAAACGAAATCCCAGGTCCAAATGCCAGAATCAGTCCCCATTCCTCATTTTCCCGCCCACCCATCTTCGTCTTCAAGCTCTCTTCCACCATGTATTCCAGCACGTACACGATCGTGTTGCTACTCGCATTTCCATAGTCCATCAGAGCTCGCCGGCTCGCCGTCAGCTTCTCGGGTAACAGTTCGAGTCTCTTCTCCAACCTATTCAGTATCGCTGGCCCGCCTGGATGCACTGCCCAGAACATTTTGTTGTATTCTTTCTCGTGCAGCCCAACTGTTTGAAGAAATGCCTCACAGAAACTCTCGATGTTATCTTCGATGATCTGGGGAAGTTCTCTTGCTATTGTGAAGCTAATACCCTCCTCTGATAGTCGCCCATCGATTATGTTCTGTGTGTTGGGAATGAATTTCTGGGTTGCCCTGTGGAGTTCAAAGAGTGGCCGTTCACTGCCCAGAACAGGGTCAGCGCCTATTATCATTGCTCCAGCCCCGTCCCCGAATAGCGCCACACCTACCAGATCGTATGGACGATTGGCGCTCGGTGGCTTGTAGCTGTTAAGAAGTTGATATTTGTGTTTAAATCTTGAGAACAACTGTTATATAATGTGGTATGATAATAGAAGATTCAATAGCTTTTTGGGAGTGTCAAAGTGTTACCCGATGATGGTTGTTTCGGAGGTGACAAGTAGAACTCGGCTTCCAGGGTTGTTTTCAGCCAAATCCTTGGCGACTCGAAGGCCTGCCACGCCTCCTGAGCAACCCATGAAGTAAAGCATGAGGCGTTGGGTGTGAGGGGCGAGCCCAAGGCCCCTTGCTAGGAAGAGATCTCCACCGGGTAGGCGAGCTTCACTGGATGAGACATAGACTAAGTGGGTAATGTCTGAAACAGACCTTCCCCAGTTCTTAATGGCAGCCTGTGAGGCTTCAATGGCCATGTCTGTCACAGCTTTGTTGCAGATCTCCAGTCTCTGCTTTATGGTTGCTCGACCTTCCATTGCTAGATCTGGGTACTTCTTCAGGATCTCTTCTGACATCACCACGTATCTGGTTTTGACTGTTGTTGTCTTGCCTGTGGATTGCCATCAGAGGAATGACAGTTAATTCAGTTAAGAGGAGGAAGTTTTTACAAGTGCAGGCAGATATATCTGCTCCCTCTAAAGGTCACCATCACAAAGTGGTTCTCTTATTATTTAAATCTCAGGTATGCAAACTAAAACTCAGATGGAGGAGAAGGGCATCTAGAGAATGATAAAGTGTACCTGTAAAATTCTTTAAAAATCATCTTCTTAGGAGTTAAAAGGTTTTATCCAAATCGAATATTCAGTCAAGTATTGGCAAATTTTTTCAGATCATTGACATTTGAAACGTTATTTTGATTTCAAAATTAAGAACTCCCCATACCGAGAAATTATGGGAGGCCCCATAATGTGGTATTCTGAATCCTATAACTTATAGTAATGTATTTAACCAG

mRNA sequence

ATGTGGTATGATAATAGAAGATTCAATAGCTTTTTGGGAGTGTCAAAGTGTTACCCGATGATGGTTGTTTCGGAGGTGACAAGTAGAACTCGGCTTCCAGGGTTGTTTTCAGCCAAATCCTTGGCGACTCGAAGGCCTGCCACGCCTCCTGAGCAACCCATGAAGTAA

Coding sequence (CDS)

ATGTGGTATGATAATAGAAGATTCAATAGCTTTTTGGGAGTGTCAAAGTGTTACCCGATGATGGTTGTTTCGGAGGTGACAAGTAGAACTCGGCTTCCAGGGTTGTTTTCAGCCAAATCCTTGGCGACTCGAAGGCCTGCCACGCCTCCTGAGCAACCCATGAAGTAA

Protein sequence

MWYDNRRFNSFLGVSKCYPMMVVSEVTSRTRLPGLFSAKSLATRRPATPPEQPMK
Homology
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BLAST of MC04g_new0095.1 vs. NCBI nr
Match: KAG7011747.1 (hypothetical protein SDJN02_26653, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 75.9 bits (185), Expect = 1.25e-15
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = 0 

Query: 14  VSKCYPMMVVSEVTSRTRLPGLFSAKSLATRRPATPPEQPMK 55
           V   YPMMVVSEVTSRTRLPGLFSAKSLAT RPATPPEQPMK
Sbjct: 107 VDYSYPMMVVSEVTSRTRLPGLFSAKSLATLRPATPPEQPMK 148

The following BLAST results are available for this feature:
BLAST of MC04g_new0095.1 vs.
Match NameE-valueIdentityDescription
BLAST of MC04g_new0095.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7011747.11.25e-1590.48hypothetical protein SDJN02_26653, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of MC04g_new0095.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MC04g_new0095.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MC04g_new0095MC04g_new0095gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MC04g_new0095.1-cdsMC04g_new0095.1-cds-MC04:3293979..3294146CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MC04g_new0095.1MC04g_new0095.1-proteinpolypeptide