MC04g_new0052.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC04g_new0052.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Pathogen-induced protein CuPi1
Location	MC04: 1895160 .. 1896262 (+)
Sequence length	306
RNA-Seq Expression	MC04g_new0052.1
Synteny	MC04g_new0052.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGGCGCGCGGTAGGTGATGTGGGCAAGCGGTAGACAGTGTGCGGCATAGGGAATGGGTAGGACAACTGCCTGACCTTACAATATTTGGTGTAAAGAAACACATAATAATAACTAATTCTTAACGCAGGCAGGTAGCTATGATAAATTTAAACTCATTCCCTCCTAACTAATCCTAGTCCCTTCACACCAATAAGTCATCTACTAATGGTTAAAACAAGTGGTCTATTCTGAAAACAAACTCTTAAAACTCTTGTTATTGAAAATTCTCCCATCTTTGTTGCGCTATAAAACATAGTGGAAAGTGGAAACCTGTGTCACAACTCCATCCCCAACTACAAGTTCCTCTTGTTTCTTCATAAAGAAACTAAAAAATGAGTAGTGGTCGGATGGGTATTATTAGAGTGGTTGGTTTCTTATTCTTCCTCATCCTCATCATCTCCTCGGAGGTGGCTGCAGCAAGGAGCCTGAATCTCGCCCGCAAAAATGGTCAGTTTCTTCGCTTTTTAACTTCATTTTTTCTCTCTCTTCTTTTGTAAGGTAATTAAGTACTGTTTTAGTAACGTTCTTATTTCTTATTTCTGATTGCAGTAGCCATACATGGAGATGAAAGCAGCCTTAGTTCCGTAGGCTTTACCAGCCCCCGCACAGGAAACCCCAACAAACCCATTTGTGATCGTCCCGGGCGTTACTCCGATTGCATAGGCAAAAAACAGCCGCCGCCCTGCAATGATCCCTATAAACGCAACTGTGGTCCACCGCAGAGTAAACCCCAAAACTGAACTGCCCTTGAACCCAAAACCATAAACCCATCTCAAAACCCTCCTCCTCCTTTCTGTCTTCTCTTACTTTCTCATAATAAGATGTTTCGGTCTGTGTCGTTTTTTCGATTCGGTATAATAATTGTAAGGCGATGATTATTTAAACTTCTGATCTCGAAGGAAAGGAAGGAGGCGATGTTTTAATATTTGATCAGCTTTGTCCAATTGTGTGTGTCAAAATGGCAGTTAATGTGATGTTATGGGGATTTGTGTGTTTTTATGTCGAGTATTTACAGCTATAAAACGAGATGATATTGTTTTGAGCCATTTATTTTGAACACAT

mRNA sequence

ATGAGTAGTGGTCGGATGGGTATTATTAGAGTGGTTGGTTTCTTATTCTTCCTCATCCTCATCATCTCCTCGGAGGTGGCTGCAGCAAGGAGCCTGAATCTCGCCCGCAAAAATGTAGCCATACATGGAGATGAAAGCAGCCTTAGTTCCGTAGGCTTTACCAGCCCCCGCACAGGAAACCCCAACAAACCCATTTGTGATCGTCCCGGGCGTTACTCCGATTGCATAGGCAAAAAACAGCCGCCGCCCTGCAATGATCCCTATAAACGCAACTGTGGTCCACCGCAGAGTAAACCCCAAAACTGA

Coding sequence (CDS)

ATGAGTAGTGGTCGGATGGGTATTATTAGAGTGGTTGGTTTCTTATTCTTCCTCATCCTCATCATCTCCTCGGAGGTGGCTGCAGCAAGGAGCCTGAATCTCGCCCGCAAAAATGTAGCCATACATGGAGATGAAAGCAGCCTTAGTTCCGTAGGCTTTACCAGCCCCCGCACAGGAAACCCCAACAAACCCATTTGTGATCGTCCCGGGCGTTACTCCGATTGCATAGGCAAAAAACAGCCGCCGCCCTGCAATGATCCCTATAAACGCAACTGTGGTCCACCGCAGAGTAAACCCCAAAACTGA

Protein sequence

MSSGRMGIIRVVGFLFFLILIISSEVAAARSLNLARKNVAIHGDESSLSSVGFTSPRTGNPNKPICDRPGRYSDCIGKKQPPPCNDPYKRNCGPPQSKPQN

Homology

[Close]

BLAST of MC04g_new0052.1 vs. NCBI nr
Match: XP_004144528.1 (uncharacterized protein LOC101208804 [Cucumis sativus] >AAB71340.1 pathogen-induced protein CuPi1 [Cucumis sativus] >KGN43457.1 hypothetical protein Csa_020505 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 1.14e-10
Identity = 40/94 (42.55%), Postives = 51/94 (54.26%), Query Frame = 0


Query: 1  MSSGRMGIIRVVGFLFFLILIISSEVAAARSLNLARKNVAIHGDESSLSSVGFTSPRTGN 60
          MSSG+     ++ F FF +L ISSEV AAR L + + N            + + +PRT  
Sbjct: 1  MSSGKGRGYSLLAFFFFFVLFISSEVTAARKLKMHQNNE---------KGIVYLTPRTAI 60

Query: 61 PNKPICDRPGRYSDCIGKKQPPP--CNDPYKRNC 92
           NKPICD  G YS CI + +PP   CN PY R C
Sbjct: 61 RNKPICDGSGPYSRCIPRSKPPKEKCN-PYVRGC 84

[Close]

BLAST of MC04g_new0052.1 vs. ExPASy TrEMBL
Match: O24512 (Pathogen-induced protein CuPi1 OS=Cucumis sativus OX=3659 GN=Csa_7G037610 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.51e-11
Identity = 40/94 (42.55%), Postives = 51/94 (54.26%), Query Frame = 0


Query: 1  MSSGRMGIIRVVGFLFFLILIISSEVAAARSLNLARKNVAIHGDESSLSSVGFTSPRTGN 60
          MSSG+     ++ F FF +L ISSEV AAR L + + N            + + +PRT  
Sbjct: 1  MSSGKGRGYSLLAFFFFFVLFISSEVTAARKLKMHQNNE---------KGIVYLTPRTAI 60

Query: 61 PNKPICDRPGRYSDCIGKKQPPP--CNDPYKRNC 92
           NKPICD  G YS CI + +PP   CN PY R C
Sbjct: 61 RNKPICDGSGPYSRCIPRSKPPKEKCN-PYVRGC 84

The following BLAST results are available for this feature:

BLAST of MC04g_new0052.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC04g_new0052.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144528.1	1.14e-10	42.55	uncharacterized protein LOC101208804 [Cucumis sativus] >AAB71340.1 pathogen-indu...	[more]

BLAST of MC04g_new0052.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
O24512	5.51e-11	42.55	Pathogen-induced protein CuPi1 OS=Cucumis sativus OX=3659 GN=Csa_7G037610 PE=2 S...	[more]

BLAST of MC04g_new0052.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..61

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC04g_new0052	MC04g_new0052	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC04g_new0052.1-cds	MC04g_new0052.1-cds-MC04:1895533..1895647	CDS
MC04g_new0052.1-cds	MC04g_new0052.1-cds-MC04:1895750..1895940	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC04g_new0052.1	MC04g_new0052.1-protein	polypeptide