MC04g1990.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC04g1990.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC04: 26669012 .. 26669245 (+)
Sequence length	234
RNA-Seq Expression	MC04g1990.1
Synteny	MC04g1990.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATTCCACTCCGATACCACAAATTGAGCGTCGGCGTCTTCAGAGAAGGGGACGATTCGCTCTTCAACTATCTTAAAGCGTGGCTATCGAGGTACGGACTCAATGATAACATCAAACCCATGGCCAATGCAATCATCCGTAAATGGATTGAGATCAAGGACGTCGTGTTGAGAACTTATGATCGGAAAGTGTTTCCGTTGTTCGTGGATTTGATTATAATAAACGAAGTAGTT

mRNA sequence

AAAATTCCACTCCGATACCACAAATTGAGCGTCGGCGTCTTCAGAGAAGGGGACGATTCGCTCTTCAACTATCTTAAAGCGTGGCTATCGAGGTACGGACTCAATGATAACATCAAACCCATGGCCAATGCAATCATCCGTAAATGGATTGAGATCAAGGACGTCGTGTTGAGAACTTATGATCGGAAAGTGTTTCCGTTGTTCGTGGATTTGATTATAATAAACGAAGTAGTT

Coding sequence (CDS)

AAAATTCCACTCCGATACCACAAATTGAGCGTCGGCGTCTTCAGAGAAGGGGACGATTCGCTCTTCAACTATCTTAAAGCGTGGCTATCGAGGTACGGACTCAATGATAACATCAAACCCATGGCCAATGCAATCATCCGTAAATGGATTGAGATCAAGGACGTCGTGTTGAGAACTTATGATCGGAAAGTGTTTCCGTTGTTCGTGGATTTGATTATAATAAACGAAGTAGTT

Protein sequence

KIPLRYHKLSVGVFREGDDSLFNYLKAWLSRYGLNDNIKPMANAIIRKWIEIKDVVLRTYDRKVFPLFVDLIIINEVV

Homology

[Close]

BLAST of MC04g1990.1 vs. NCBI nr
Match: KAG6571896.1 (E3 ubiquitin-protein ligase MPSR1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 48.9 bits (115), Expect = 1.97e-04
Identity = 26/73 (35.62%), Postives = 41/73 (56.16%), Query Frame = 0


Query: 1   KIPLRYHKLSVGVFREGDDSLFNYLKAWLSRYGLNDNIKPMANAIIRKWIEIKDVVLRTY 60
           KIPL  ++    +F   DDSLF+ L      +    + +P+A+A+I +WIEI+D      
Sbjct: 66  KIPLCDNQFRAEIFNRDDDSLFHSLSCSFQNFKPEIDAEPVADALIERWIEIRDEANSRS 125

Query: 61  DRKVFPLFVDLII 73
             +VFP+ V+L I
Sbjct: 126 SDRVFPMTVNLTI 138

[Close]

BLAST of MC04g1990.1 vs. NCBI nr
Match: XP_023511497.1 (ERAD-associated E3 ubiquitin-protein ligase HRD1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 48.9 bits (115), Expect = 1.97e-04
Identity = 26/73 (35.62%), Postives = 41/73 (56.16%), Query Frame = 0


Query: 1   KIPLRYHKLSVGVFREGDDSLFNYLKAWLSRYGLNDNIKPMANAIIRKWIEIKDVVLRTY 60
           KIPL  ++    +F   DDSLF+ L      +    + +P+A+A+I +WIEI+D      
Sbjct: 66  KIPLCDNQFRAEIFNRDDDSLFHSLSCSFQNFKPEIDAEPVADALIERWIEIRDEANSRS 125

Query: 61  DRKVFPLFVDLII 73
             +VFP+ V+L I
Sbjct: 126 SDRVFPMTVNLTI 138

[Close]

BLAST of MC04g1990.1 vs. NCBI nr
Match: XP_022972455.1 (ERAD-associated E3 ubiquitin-protein ligase HRD1-like [Cucurbita maxima])

HSP 1 Score: 48.9 bits (115), Expect = 2.03e-04
Identity = 25/71 (35.21%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 1   KIPLRYHKLSVGVFREGDDSLFNYLKAWLSRYGLNDNIKPMANAIIRKWIEIKDVVLRTY 60
           KIPL  ++    +F   DDSLF+ L +    +    + +P+A+A+I +WIEI+D      
Sbjct: 66  KIPLCDNQFRAEIFNRDDDSLFHNLSSSFQNFKPEIDAEPVADALIERWIEIRDEANSRS 125

Query: 61  DRKVFPLFVDL 71
             +VFP+ V+L
Sbjct: 126 SDRVFPMTVNL 136

[Close]

BLAST of MC04g1990.1 vs. NCBI nr
Match: XP_022952293.1 (ERAD-associated E3 ubiquitin-protein ligase HRD1-like [Cucurbita moschata] >KAG7011584.1 HRD1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 48.5 bits (114), Expect = 2.72e-04
Identity = 25/71 (35.21%), Postives = 40/71 (56.34%), Query Frame = 0


Query: 1   KIPLRYHKLSVGVFREGDDSLFNYLKAWLSRYGLNDNIKPMANAIIRKWIEIKDVVLRTY 60
           KIPL  ++    +F   DDSLF+ L      +    + +P+A+A+I +WIEI+D      
Sbjct: 66  KIPLCDNQFRAEIFNRDDDSLFHSLSCSFQNFKPEIDAEPVADALIERWIEIRDEANSRS 125

Query: 61  DRKVFPLFVDL 71
             +VFP+ V+L
Sbjct: 126 SDRVFPMTVNL 136

[Close]

BLAST of MC04g1990.1 vs. ExPASy TrEMBL
Match: A0A6J1I8N9 (ERAD-associated E3 ubiquitin-protein ligase HRD1-like OS=Cucurbita maxima OX=3661 GN=LOC111471014 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 9.80e-05
Identity = 25/71 (35.21%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 1   KIPLRYHKLSVGVFREGDDSLFNYLKAWLSRYGLNDNIKPMANAIIRKWIEIKDVVLRTY 60
           KIPL  ++    +F   DDSLF+ L +    +    + +P+A+A+I +WIEI+D      
Sbjct: 66  KIPLCDNQFRAEIFNRDDDSLFHNLSSSFQNFKPEIDAEPVADALIERWIEIRDEANSRS 125

Query: 61  DRKVFPLFVDL 71
             +VFP+ V+L
Sbjct: 126 SDRVFPMTVNL 136

[Close]

BLAST of MC04g1990.1 vs. ExPASy TrEMBL
Match: A0A6J1GK53 (ERAD-associated E3 ubiquitin-protein ligase HRD1-like OS=Cucurbita moschata OX=3662 GN=LOC111455016 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.32e-04
Identity = 25/71 (35.21%), Postives = 40/71 (56.34%), Query Frame = 0


Query: 1   KIPLRYHKLSVGVFREGDDSLFNYLKAWLSRYGLNDNIKPMANAIIRKWIEIKDVVLRTY 60
           KIPL  ++    +F   DDSLF+ L      +    + +P+A+A+I +WIEI+D      
Sbjct: 66  KIPLCDNQFRAEIFNRDDDSLFHSLSCSFQNFKPEIDAEPVADALIERWIEIRDEANSRS 125

Query: 61  DRKVFPLFVDL 71
             +VFP+ V+L
Sbjct: 126 SDRVFPMTVNL 136

[Close]

BLAST of MC04g1990.1 vs. ExPASy TrEMBL
Match: A0A5A7SNF1 (RING finger protein 141-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00770 PE=4 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 6.76e-04
Identity = 28/78 (35.90%), Postives = 42/78 (53.85%), Query Frame = 0


Query: 1   KIPLRYHKLSVGVFREGDDSLFNYLKAWLSRYGLNDNIKPMANAIIRKWIEIKDVVLRTY 60
           K+PL  H+  V +F   D+SLF YL      Y    + + +A A+I +WI I+D +    
Sbjct: 66  KVPLCDHQFPVEIFNGDDNSLFQYLCCSFENYEPKIDAEVVATALIEQWIGIRDQLNSRS 125

Query: 61  DRKVFPLFVDLIIINEVV 78
             KVF + V+L I + VV
Sbjct: 126 CHKVFSMTVNLTITDVVV 143

[Close]

BLAST of MC04g1990.1 vs. ExPASy TrEMBL
Match: A0A1S4E0Q9 (RING finger protein 141-like OS=Cucumis melo OX=3656 GN=LOC103495859 PE=4 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 6.76e-04
Identity = 28/78 (35.90%), Postives = 42/78 (53.85%), Query Frame = 0


Query: 1   KIPLRYHKLSVGVFREGDDSLFNYLKAWLSRYGLNDNIKPMANAIIRKWIEIKDVVLRTY 60
           K+PL  H+  V +F   D+SLF YL      Y    + + +A A+I +WI I+D +    
Sbjct: 66  KVPLCDHQFPVEIFNGDDNSLFQYLCCSFENYEPKIDAEVVATALIEQWIGIRDQLNSRS 125

Query: 61  DRKVFPLFVDLIIINEVV 78
             KVF + V+L I + VV
Sbjct: 126 CHKVFSMTVNLTITDVVV 143

The following BLAST results are available for this feature:

BLAST of MC04g1990.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC04g1990.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571896.1	1.97e-04	35.62	E3 ubiquitin-protein ligase MPSR1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023511497.1	1.97e-04	35.62	ERAD-associated E3 ubiquitin-protein ligase HRD1-like [Cucurbita pepo subsp. pep...	[more]
XP_022972455.1	2.03e-04	35.21	ERAD-associated E3 ubiquitin-protein ligase HRD1-like [Cucurbita maxima]	[more]
XP_022952293.1	2.72e-04	35.21	ERAD-associated E3 ubiquitin-protein ligase HRD1-like [Cucurbita moschata] >KAG7...	[more]

BLAST of MC04g1990.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I8N9	9.80e-05	35.21	ERAD-associated E3 ubiquitin-protein ligase HRD1-like OS=Cucurbita maxima OX=366...	[more]
A0A6J1GK53	1.32e-04	35.21	ERAD-associated E3 ubiquitin-protein ligase HRD1-like OS=Cucurbita moschata OX=3...	[more]
A0A5A7SNF1	6.76e-04	35.90	RING finger protein 141-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S4E0Q9	6.76e-04	35.90	RING finger protein 141-like OS=Cucumis melo OX=3656 GN=LOC103495859 PE=4 SV=1	[more]

BLAST of MC04g1990.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC04g1990	MC04g1990	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC04g1990.1-cds	MC04g1990.1-cds-MC04:26669012..26669245	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC04g1990.1	MC04g1990.1-protein	polypeptide