MC04g1950.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC04g1950.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Protein of unknown function (DUF 3339)
Location	MC04: 26327426 .. 26327629 (-)
Sequence length	204
RNA-Seq Expression	MC04g1950.1
Synteny	MC04g1950.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGCTGACTGGGGACCGGTTGTCATCGCGGTGGCGCTGTTCATCCTCCTGTCGCCGGGGCTGCTTTTTCAGTTGCCGGCGAGAATCAGGGTGGTGGAGTTTGGGAACATGAACACCAGTGGGATTGCCATTCTGGTGCACGCCATCATTTTCTTCTGCATACTCACCATTTTGGTCATCGCAATTGGTATTCACATACAC

mRNA sequence

ATGAGTGCTGACTGGGGACCGGTTGTCATCGCGGTGGCGCTGTTCATCCTCCTGTCGCCGGGGCTGCTTTTTCAGTTGCCGGCGAGAATCAGGGTGGTGGAGTTTGGGAACATGAACACCAGTGGGATTGCCATTCTGGTGCACGCCATCATTTTCTTCTGCATACTCACCATTTTGGTCATCGCAATTGGTATTCACATACAC

Coding sequence (CDS)

ATGAGTGCTGACTGGGGACCGGTTGTCATCGCGGTGGCGCTGTTCATCCTCCTGTCGCCGGGGCTGCTTTTTCAGTTGCCGGCGAGAATCAGGGTGGTGGAGTTTGGGAACATGAACACCAGTGGGATTGCCATTCTGGTGCACGCCATCATTTTCTTCTGCATACTCACCATTTTGGTCATCGCAATTGGTATTCACATACAC

Protein sequence

MSADWGPVVIAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIAIGIHIH

Homology

[Close]

BLAST of MC04g1950.1 vs. NCBI nr
Match: XP_022134305.1 (uncharacterized protein LOC111006600 [Momordica charantia])

HSP 1 Score: 125 bits (313), Expect = 8.59e-36
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVIAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MSADWGPVVIAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV
Sbjct: 1  MSADWGPVVIAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60

Query: 61 IAIGIHIH 68
          IAIGIHIH
Sbjct: 61 IAIGIHIH 68

[Close]

BLAST of MC04g1950.1 vs. NCBI nr
Match: XP_008441321.1 (PREDICTED: uncharacterized protein LOC103485471 [Cucumis melo] >XP_011649953.1 uncharacterized protein LOC105434681 [Cucumis sativus] >XP_038884724.1 uncharacterized protein LOC120075416 [Benincasa hispida])

HSP 1 Score: 124 bits (311), Expect = 1.73e-35
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVIAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MSADWGPVV+AVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTIL+
Sbjct: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILI 60

Query: 61 IAIGIHIH 68
          IAIGIHIH
Sbjct: 61 IAIGIHIH 68

[Close]

BLAST of MC04g1950.1 vs. NCBI nr
Match: XP_022939393.1 (uncharacterized protein LOC111445324 [Cucurbita moschata] >XP_022992844.1 uncharacterized protein LOC111489052 [Cucurbita maxima] >XP_023550674.1 uncharacterized protein LOC111808749 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 123 bits (309), Expect = 3.50e-35
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVIAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          M+ADWGPVV+AVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV
Sbjct: 1  MNADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60

Query: 61 IAIGIHIH 68
          IAIGIHIH
Sbjct: 61 IAIGIHIH 68

[Close]

BLAST of MC04g1950.1 vs. NCBI nr
Match: XP_022961461.1 (uncharacterized protein LOC111462035 [Cucurbita moschata] >XP_022990859.1 uncharacterized protein LOC111487624 [Cucurbita maxima] >XP_023522991.1 uncharacterized protein LOC111787076 [Cucurbita pepo subsp. pepo] >XP_023544168.1 uncharacterized protein LOC111803819 [Cucurbita pepo subsp. pepo] >XP_023544180.1 uncharacterized protein LOC111803828 [Cucurbita pepo subsp. pepo] >KAG7033374.1 hypothetical protein SDJN02_07430, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 123 bits (309), Expect = 3.60e-35
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVIAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MSADWGPVV+AVALFI+LSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV
Sbjct: 1  MSADWGPVVVAVALFIVLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60

Query: 61 IAIGIHIH 68
          IAIGIHIH
Sbjct: 61 IAIGIHIH 68

[Close]

BLAST of MC04g1950.1 vs. NCBI nr
Match: XP_019059544.1 (PREDICTED: uncharacterized protein LOC109117188 [Tarenaya hassleriana])

HSP 1 Score: 119 bits (299), Expect = 1.18e-33
Identity = 63/68 (92.65%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MSADWGPVVIAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MSADWGPVV+AV LFILLSPGLLFQLPAR RVVEFGNMNTSGIAILVHA+I+FCILTILV
Sbjct: 1  MSADWGPVVVAVVLFILLSPGLLFQLPARTRVVEFGNMNTSGIAILVHAVIYFCILTILV 60

Query: 61 IAIGIHIH 68
          IAIGIHIH
Sbjct: 61 IAIGIHIH 68

[Close]

BLAST of MC04g1950.1 vs. ExPASy TrEMBL
Match: A0A6J1BXY0 (uncharacterized protein LOC111006600 OS=Momordica charantia OX=3673 GN=LOC111006600 PE=4 SV=1)

HSP 1 Score: 125 bits (313), Expect = 4.16e-36
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVIAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MSADWGPVVIAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV
Sbjct: 1  MSADWGPVVIAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60

Query: 61 IAIGIHIH 68
          IAIGIHIH
Sbjct: 61 IAIGIHIH 68

[Close]

BLAST of MC04g1950.1 vs. ExPASy TrEMBL
Match: A0A0A0LQ54 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406090 PE=4 SV=1)

HSP 1 Score: 124 bits (311), Expect = 8.40e-36
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVIAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MSADWGPVV+AVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTIL+
Sbjct: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILI 60

Query: 61 IAIGIHIH 68
          IAIGIHIH
Sbjct: 61 IAIGIHIH 68

[Close]

BLAST of MC04g1950.1 vs. ExPASy TrEMBL
Match: A0A1S3B3T8 (uncharacterized protein LOC103485471 OS=Cucumis melo OX=3656 GN=LOC103485471 PE=4 SV=1)

HSP 1 Score: 124 bits (311), Expect = 8.40e-36
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVIAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MSADWGPVV+AVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTIL+
Sbjct: 1  MSADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILI 60

Query: 61 IAIGIHIH 68
          IAIGIHIH
Sbjct: 61 IAIGIHIH 68

[Close]

BLAST of MC04g1950.1 vs. ExPASy TrEMBL
Match: A0A6J1JYL4 (uncharacterized protein LOC111489052 OS=Cucurbita maxima OX=3661 GN=LOC111489052 PE=4 SV=1)

HSP 1 Score: 123 bits (309), Expect = 1.70e-35
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVIAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          M+ADWGPVV+AVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV
Sbjct: 1  MNADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60

Query: 61 IAIGIHIH 68
          IAIGIHIH
Sbjct: 61 IAIGIHIH 68

[Close]

BLAST of MC04g1950.1 vs. ExPASy TrEMBL
Match: A0A6J1FLI8 (uncharacterized protein LOC111445324 OS=Cucurbita moschata OX=3662 GN=LOC111445324 PE=4 SV=1)

HSP 1 Score: 123 bits (309), Expect = 1.70e-35
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MSADWGPVVIAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          M+ADWGPVV+AVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV
Sbjct: 1  MNADWGPVVVAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60

Query: 61 IAIGIHIH 68
          IAIGIHIH
Sbjct: 61 IAIGIHIH 68

[Close]

BLAST of MC04g1950.1 vs. TAIR 10
Match: AT5G40980.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 114.8 bits (286), Expect = 2.8e-26
Identity = 59/68 (86.76%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MSADWGPVVIAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MSADWGPV++AVALFILLSPGLLFQLPAR RV+EFGNM+TSGI+ILVHAII+FCILTIL+
Sbjct: 1  MSADWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCILTILI 60

Query: 61 IAIGIHIH 69
          IAI IHIH
Sbjct: 61 IAIQIHIH 68

[Close]

BLAST of MC04g1950.1 vs. TAIR 10
Match: AT3G27027.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 112.8 bits (281), Expect = 1.1e-25
Identity = 59/68 (86.76%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 1  MSADWGPVVIAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILV 60
          MS DWGPV++AV+LFILLSPGLLFQLPAR RVVEFGNM TSGIAILVHA I+FCILTILV
Sbjct: 1  MSTDWGPVIVAVSLFILLSPGLLFQLPARTRVVEFGNMTTSGIAILVHAFIYFCILTILV 60

Query: 61 IAIGIHIH 69
          IAI IHIH
Sbjct: 61 IAIQIHIH 68

[Close]

BLAST of MC04g1950.1 vs. TAIR 10
Match: AT3G01940.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 99.0 bits (245), Expect = 1.6e-21
Identity = 52/66 (78.79%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 3  ADWGPVVIAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIA 62
          ADWGPV +AV LF++LSPGLLFQLPAR RV+E GNM TSGI+ILVHAI+FF I+TILVIA
Sbjct: 4  ADWGPVAVAVVLFVVLSPGLLFQLPARRRVLECGNMTTSGISILVHAILFFAIITILVIA 63

Query: 63 IGIHIH 69
          I IHIH
Sbjct: 64 IQIHIH 69

[Close]

BLAST of MC04g1950.1 vs. TAIR 10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 92.4 bits (228), Expect = 1.5e-19
Identity = 48/66 (72.73%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 3  ADWGPVVIAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIA 62
          ADWGPVV+AV LF+LL+PGLLFQ+PAR RVVEFGNM TSG +ILVH IIFF ++TI  IA
Sbjct: 2  ADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTIA 61

Query: 63 IGIHIH 69
          I +HI+
Sbjct: 62 IRLHIY 67

[Close]

BLAST of MC04g1950.1 vs. TAIR 10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 91.7 bits (226), Expect = 2.5e-19
Identity = 48/66 (72.73%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 3  ADWGPVVIAVALFILLSPGLLFQLPARIRVVEFGNMNTSGIAILVHAIIFFCILTILVIA 62
          ADWGPV+IAV LF++LSPGLLFQ+PA  RVVEFGNM TSG +ILVHAIIFF ++TI  IA
Sbjct: 2  ADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTIA 61

Query: 63 IGIHIH 69
          I +HI+
Sbjct: 62 INVHIY 67

The following BLAST results are available for this feature:

BLAST of MC04g1950.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC04g1950.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134305.1	8.59e-36	100.00	uncharacterized protein LOC111006600 [Momordica charantia]	[more]
XP_008441321.1	1.73e-35	97.06	PREDICTED: uncharacterized protein LOC103485471 [Cucumis melo] >XP_011649953.1 u...	[more]
XP_022939393.1	3.50e-35	97.06	uncharacterized protein LOC111445324 [Cucurbita moschata] >XP_022992844.1 unchar...	[more]
XP_022961461.1	3.60e-35	97.06	uncharacterized protein LOC111462035 [Cucurbita moschata] >XP_022990859.1 unchar...	[more]
XP_019059544.1	1.18e-33	92.65	PREDICTED: uncharacterized protein LOC109117188 [Tarenaya hassleriana]	[more]

BLAST of MC04g1950.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BXY0	4.16e-36	100.00	uncharacterized protein LOC111006600 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A0A0LQ54	8.40e-36	97.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406090 PE=4 SV=1	[more]
A0A1S3B3T8	8.40e-36	97.06	uncharacterized protein LOC103485471 OS=Cucumis melo OX=3656 GN=LOC103485471 PE=...	[more]
A0A6J1JYL4	1.70e-35	97.06	uncharacterized protein LOC111489052 OS=Cucurbita maxima OX=3661 GN=LOC111489052...	[more]
A0A6J1FLI8	1.70e-35	97.06	uncharacterized protein LOC111445324 OS=Cucurbita moschata OX=3662 GN=LOC1114453...	[more]

BLAST of MC04g1950.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40980.1	2.8e-26	86.76	Protein of unknown function (DUF 3339)	[more]
AT3G27027.1	1.1e-25	86.76	Protein of unknown function (DUF 3339)	[more]
AT3G01940.1	1.6e-21	78.79	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	1.5e-19	72.73	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	2.5e-19	72.73	Protein of unknown function (DUF 3339)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 3..68 e-value: 6.1E-33 score: 112.8
IPR021775	Protein of unknown function DUF3339	PANTHER	PTHR33128	OS05G0103400 PROTEIN	coord: 1..68
None	No IPR available	PANTHER	PTHR33128:SF47	GPI-ANCHORED-LIKE PROTEIN (DUF 3339)	coord: 1..68

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC04g1950	MC04g1950	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC04g1950.1-cds	MC04g1950.1-cds-MC04:26327426..26327629	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC04g1950.1	MC04g1950.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane