MC04g0690.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC04g0690.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC04: 6684523 .. 6684714 (-)
Sequence length	192
RNA-Seq Expression	MC04g0690.1
Synteny	MC04g0690.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAATTTAATGTTGAGTTAAAGAAAATTAGAATTGAAATCCATGAACGGGTCATGGAAGAATTGAATACTGAGCTAAAGAAAATAAGAGAAGAGATTCAAGAACAGGTCATGGAGGTGCAGAATGCAGAGCTAAAGAAGACGAGACAAGACATCGATAAGATTCAGGGGCAGGTCACGAAAATTTTC

mRNA sequence

ATGGAAGAATTTAATGTTGAGTTAAAGAAAATTAGAATTGAAATCCATGAACGGGTCATGGAAGAATTGAATACTGAGCTAAAGAAAATAAGAGAAGAGATTCAAGAACAGGTCATGGAGGTGCAGAATGCAGAGCTAAAGAAGACGAGACAAGACATCGATAAGATTCAGGGGCAGGTCACGAAAATTTTC

Coding sequence (CDS)

ATGGAAGAATTTAATGTTGAGTTAAAGAAAATTAGAATTGAAATCCATGAACGGGTCATGGAAGAATTGAATACTGAGCTAAAGAAAATAAGAGAAGAGATTCAAGAACAGGTCATGGAGGTGCAGAATGCAGAGCTAAAGAAGACGAGACAAGACATCGATAAGATTCAGGGGCAGGTCACGAAAATTTTC

Protein sequence

MEEFNVELKKIRIEIHERVMEELNTELKKIREEIQEQVMEVQNAELKKTRQDIDKIQGQVTKIF

Homology

[Close]

BLAST of MC04g0690.1 vs. NCBI nr
Match: XP_022143515.1 (uncharacterized protein LOC111013388 [Momordica charantia])

HSP 1 Score: 89.0 bits (219), Expect = 1.95e-20
Identity = 51/64 (79.69%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 1   MEEFNVELKKIRIEIHERVMEELNTELKKIREEIQEQVMEVQNAELKKTRQDIDKIQGQV 60
           MEEFN ELKKIR EIHERV+EELN ELK+IR+EIQE V EV N ELKK RQDIDKIQGQV
Sbjct: 46  MEEFNAELKKIRDEIHERVIEELNXELKEIRDEIQEHVXEVHNVELKKMRQDIDKIQGQV 105

Query: 61  TKIF 64
           T I 
Sbjct: 106 TGIL 109

[Close]

BLAST of MC04g0690.1 vs. NCBI nr
Match: XP_022153553.1 (uncharacterized protein LOC111021029 [Momordica charantia])

HSP 1 Score: 87.8 bits (216), Expect = 4.06e-19
Identity = 51/64 (79.69%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 1  MEEFNVELKKIRIEIHERVMEELNTELKKIREEIQEQVMEVQNAELKKTRQDIDKIQGQV 60
          MEEFN ELK I  EIHERV+EELN ELKKIR+EIQEQVMEVQN ELKK RQDID IQ QV
Sbjct: 1  MEEFNAELKNISDEIHERVIEELNIELKKIRDEIQEQVMEVQNVELKKMRQDIDNIQKQV 60

Query: 61 TKIF 64
           KI 
Sbjct: 61 MKIL 64

[Close]

BLAST of MC04g0690.1 vs. ExPASy TrEMBL
Match: A0A6J1CP05 (uncharacterized protein LOC111013388 OS=Momordica charantia OX=3673 GN=LOC111013388 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 9.46e-21
Identity = 51/64 (79.69%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 1   MEEFNVELKKIRIEIHERVMEELNTELKKIREEIQEQVMEVQNAELKKTRQDIDKIQGQV 60
           MEEFN ELKKIR EIHERV+EELN ELK+IR+EIQE V EV N ELKK RQDIDKIQGQV
Sbjct: 46  MEEFNAELKKIRDEIHERVIEELNXELKEIRDEIQEHVXEVHNVELKKMRQDIDKIQGQV 105

Query: 61  TKIF 64
           T I 
Sbjct: 106 TGIL 109

[Close]

BLAST of MC04g0690.1 vs. ExPASy TrEMBL
Match: A0A6J1DHS7 (uncharacterized protein LOC111021029 OS=Momordica charantia OX=3673 GN=LOC111021029 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.96e-19
Identity = 51/64 (79.69%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 1  MEEFNVELKKIRIEIHERVMEELNTELKKIREEIQEQVMEVQNAELKKTRQDIDKIQGQV 60
          MEEFN ELK I  EIHERV+EELN ELKKIR+EIQEQVMEVQN ELKK RQDID IQ QV
Sbjct: 1  MEEFNAELKNISDEIHERVIEELNIELKKIRDEIQEQVMEVQNVELKKMRQDIDNIQKQV 60

Query: 61 TKIF 64
           KI 
Sbjct: 61 MKIL 64

The following BLAST results are available for this feature:

BLAST of MC04g0690.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC04g0690.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143515.1	1.95e-20	79.69	uncharacterized protein LOC111013388 [Momordica charantia]	[more]
XP_022153553.1	4.06e-19	79.69	uncharacterized protein LOC111021029 [Momordica charantia]	[more]

BLAST of MC04g0690.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CP05	9.46e-21	79.69	uncharacterized protein LOC111013388 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DHS7	1.96e-19	79.69	uncharacterized protein LOC111021029 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]

BLAST of MC04g0690.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 6..59

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC04g0690	MC04g0690	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC04g0690.1-cds	MC04g0690.1-cds-MC04:6684523..6684714	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC04g0690.1	MC04g0690.1-protein	polypeptide