MC04g0013.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC04g0013.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Cysteine-rich PDZ-binding protein
Location	MC04: 120780 .. 121042 (+)
Sequence length	159
RNA-Seq Expression	MC04g0013.1
Synteny	MC04g0013.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATGGACTCCTTATGGAAATACTAAGTTCATAATTTATAAGCATGCAGCGAGTACACCAGGATGCCAAGTATTTCACACATGTGCTTACAGCAAAGGTATGAATTACGAATGGTAATTTTTGTTTGTTCTGATATCTGCATACAGATTATTACTATATCTCAATGCGATAATGTGCTAAATCCTCGTGCACGCTTGTCAGGGGTTTGCGCCATGTGCGGGAAGCGAGTACTTGACAACAAGTTTTATAAACAAAGCAATGTG

mRNA sequence

AGATGGACTCCTTATGGAAATACTAAGTTCATAATTTATAAGCATGCAGCGAGTACACCAGGATGCCAAGTATTTCACACATGTGCTTACAGCAAAGGGGTTTGCGCCATGTGCGGGAAGCGAGTACTTGACAACAAGTTTTATAAACAAAGCAATGTG

Coding sequence (CDS)

AGATGGACTCCTTATGGAAATACTAAGTTCATAATTTATAAGCATGCAGCGAGTACACCAGGATGCCAAGTATTTCACACATGTGCTTACAGCAAAGGGGTTTGCGCCATGTGCGGGAAGCGAGTACTTGACAACAAGTTTTATAAACAAAGCAATGTG

Protein sequence

RWTPYGNTKFIIYKHAASTPGCQVFHTCAYSKGVCAMCGKRVLDNKFYKQSNV

Homology

[Close]

BLAST of MC04g0013.1 vs. ExPASy Swiss-Prot
Match: Q3ZC66 (Cysteine-rich PDZ-binding protein OS=Bos taurus OX=9913 GN=CRIPT PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.0e-09
Identity = 29/56 (51.79%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 1   RWTPYGNTKFI---IYKHAASTPGCQVFHTCAYSKGVCAMCGKRVLDNKFYKQSNV 54
           R+ PYG  KF    I K +   PG      CAY KG+CAMCGK+VLD K YKQ++V
Sbjct: 46  RFDPYGKNKFSTCRICKSSVHQPGSHYCQGCAYKKGICAMCGKKVLDTKNYKQTSV 101

[Close]

BLAST of MC04g0013.1 vs. ExPASy Swiss-Prot
Match: Q9P021 (Cysteine-rich PDZ-binding protein OS=Homo sapiens OX=9606 GN=CRIPT PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.0e-09
Identity = 29/56 (51.79%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 1   RWTPYGNTKFI---IYKHAASTPGCQVFHTCAYSKGVCAMCGKRVLDNKFYKQSNV 54
           R+ PYG  KF    I K +   PG      CAY KG+CAMCGK+VLD K YKQ++V
Sbjct: 46  RFDPYGKNKFSTCRICKSSVHQPGSHYCQGCAYKKGICAMCGKKVLDTKNYKQTSV 101

[Close]

BLAST of MC04g0013.1 vs. ExPASy Swiss-Prot
Match: O70333 (Cysteine-rich PDZ-binding protein OS=Mus musculus OX=10090 GN=Cript PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.0e-09
Identity = 29/56 (51.79%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 1   RWTPYGNTKFI---IYKHAASTPGCQVFHTCAYSKGVCAMCGKRVLDNKFYKQSNV 54
           R+ PYG  KF    I K +   PG      CAY KG+CAMCGK+VLD K YKQ++V
Sbjct: 46  RFDPYGKNKFSTCRICKSSVHQPGSHYCQGCAYKKGICAMCGKKVLDTKNYKQTSV 101

[Close]

BLAST of MC04g0013.1 vs. ExPASy Swiss-Prot
Match: Q792Q4 (Cysteine-rich PDZ-binding protein OS=Rattus norvegicus OX=10116 GN=Cript PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.0e-09
Identity = 29/56 (51.79%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 1   RWTPYGNTKFI---IYKHAASTPGCQVFHTCAYSKGVCAMCGKRVLDNKFYKQSNV 54
           R+ PYG  KF    I K +   PG      CAY KG+CAMCGK+VLD K YKQ++V
Sbjct: 46  RFDPYGKNKFSTCRICKSSVHQPGSHYCQGCAYKKGICAMCGKKVLDTKNYKQTSV 101

[Close]

BLAST of MC04g0013.1 vs. ExPASy Swiss-Prot
Match: Q5ZKB6 (Cysteine-rich PDZ-binding protein OS=Gallus gallus OX=9031 GN=CRIPT PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 6.8e-09
Identity = 28/56 (50.00%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 1   RWTPYGNTKFI---IYKHAASTPGCQVFHTCAYSKGVCAMCGKRVLDNKFYKQSNV 54
           R+ PYG  KF    I K +   PG      CAY KG+C+MCGK+VLD K YKQ++V
Sbjct: 46  RFDPYGKNKFAICRICKSSVHQPGSHYCQGCAYKKGICSMCGKKVLDTKNYKQTSV 101

[Close]

BLAST of MC04g0013.1 vs. NCBI nr
Match: XP_004496774.1 (cysteine-rich PDZ-binding protein [Cicer arietinum])

HSP 1 Score: 81.6 bits (200), Expect = 1.64e-18
Identity = 39/53 (73.58%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 1  RWTPYGNTKFIIYKHAASTPGCQVFHTCAYSKGVCAMCGKRVLDNKFYKQSNV 53
          RWTPYGNTK II K      G +  HTCAYSKGVCAMCGK+VLD KFYKQSNV
Sbjct: 45 RWTPYGNTKCIICKQQVHQDG-KYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96

[Close]

BLAST of MC04g0013.1 vs. NCBI nr
Match: XP_004134750.1 (cysteine-rich PDZ-binding protein [Cucumis sativus] >XP_008439962.1 PREDICTED: cysteine-rich PDZ-binding protein [Cucumis melo] >KGN49130.1 hypothetical protein Csa_004040 [Cucumis sativus] >TYK13064.1 cysteine-rich PDZ-binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 1.64e-18
Identity = 39/53 (73.58%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 1  RWTPYGNTKFIIYKHAASTPGCQVFHTCAYSKGVCAMCGKRVLDNKFYKQSNV 53
          RWTPYGNTK II K      G +  HTCAYSKGVCAMCGK+VLD KFYKQSNV
Sbjct: 45 RWTPYGNTKCIICKQQVHQDG-KYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96

[Close]

BLAST of MC04g0013.1 vs. NCBI nr
Match: XP_021866364.1 (cysteine-rich PDZ-binding protein [Spinacia oleracea])

HSP 1 Score: 81.6 bits (200), Expect = 1.64e-18
Identity = 39/53 (73.58%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 1  RWTPYGNTKFIIYKHAASTPGCQVFHTCAYSKGVCAMCGKRVLDNKFYKQSNV 53
          RWTPYGNTK II K      G +  HTCAYSKGVCAMCGK+VLD KFYKQSNV
Sbjct: 45 RWTPYGNTKCIICKQQVHQDG-KYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96

[Close]

BLAST of MC04g0013.1 vs. NCBI nr
Match: KNA15065.1 (hypothetical protein SOVF_101560, partial [Spinacia oleracea])

HSP 1 Score: 81.6 bits (200), Expect = 2.33e-18
Identity = 39/53 (73.58%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 1   RWTPYGNTKFIIYKHAASTPGCQVFHTCAYSKGVCAMCGKRVLDNKFYKQSNV 53
           RWTPYGNTK II K      G +  HTCAYSKGVCAMCGK+VLD KFYKQSNV
Sbjct: 58  RWTPYGNTKCIICKQQVHQDG-KYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 109

[Close]

BLAST of MC04g0013.1 vs. NCBI nr
Match: PON31992.1 (PDZ-binding protein, CRIPT [Parasponia andersonii])

HSP 1 Score: 81.6 bits (200), Expect = 2.33e-18
Identity = 39/53 (73.58%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 1  RWTPYGNTKFIIYKHAASTPGCQVFHTCAYSKGVCAMCGKRVLDNKFYKQSNV 53
          RWTPYGNTK II K      G +  HTCAYSKGVCAMCGK+VLD KFYKQSNV
Sbjct: 45 RWTPYGNTKCIICKQQVHQDG-KYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96

[Close]

BLAST of MC04g0013.1 vs. ExPASy TrEMBL
Match: A0A5D3CPV5 (Cysteine-rich PDZ-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006660 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.95e-19
Identity = 39/53 (73.58%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 1  RWTPYGNTKFIIYKHAASTPGCQVFHTCAYSKGVCAMCGKRVLDNKFYKQSNV 53
          RWTPYGNTK II K      G +  HTCAYSKGVCAMCGK+VLD KFYKQSNV
Sbjct: 45 RWTPYGNTKCIICKQQVHQDG-KYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96

[Close]

BLAST of MC04g0013.1 vs. ExPASy TrEMBL
Match: A0A0A0KHE3 (Cysteine-rich PDZ-binding protein OS=Cucumis sativus OX=3659 GN=Csa_6G514910 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.95e-19
Identity = 39/53 (73.58%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 1  RWTPYGNTKFIIYKHAASTPGCQVFHTCAYSKGVCAMCGKRVLDNKFYKQSNV 53
          RWTPYGNTK II K      G +  HTCAYSKGVCAMCGK+VLD KFYKQSNV
Sbjct: 45 RWTPYGNTKCIICKQQVHQDG-KYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96

[Close]

BLAST of MC04g0013.1 vs. ExPASy TrEMBL
Match: A0A1S2XZ43 (Cysteine-rich PDZ-binding protein OS=Cicer arietinum OX=3827 GN=LOC101506406 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.95e-19
Identity = 39/53 (73.58%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 1  RWTPYGNTKFIIYKHAASTPGCQVFHTCAYSKGVCAMCGKRVLDNKFYKQSNV 53
          RWTPYGNTK II K      G +  HTCAYSKGVCAMCGK+VLD KFYKQSNV
Sbjct: 45 RWTPYGNTKCIICKQQVHQDG-KYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96

[Close]

BLAST of MC04g0013.1 vs. ExPASy TrEMBL
Match: A0A1S3B0M5 (Cysteine-rich PDZ-binding protein OS=Cucumis melo OX=3656 GN=LOC103484593 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.95e-19
Identity = 39/53 (73.58%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 1  RWTPYGNTKFIIYKHAASTPGCQVFHTCAYSKGVCAMCGKRVLDNKFYKQSNV 53
          RWTPYGNTK II K      G +  HTCAYSKGVCAMCGK+VLD KFYKQSNV
Sbjct: 45 RWTPYGNTKCIICKQQVHQDG-KYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96

[Close]

BLAST of MC04g0013.1 vs. ExPASy TrEMBL
Match: A0A2P5A629 (Cysteine-rich PDZ-binding protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_365160 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.13e-18
Identity = 39/53 (73.58%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 1  RWTPYGNTKFIIYKHAASTPGCQVFHTCAYSKGVCAMCGKRVLDNKFYKQSNV 53
          RWTPYGNTK II K      G +  HTCAYSKGVCAMCGK+VLD KFYKQSNV
Sbjct: 45 RWTPYGNTKCIICKQQVHQDG-KYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96

[Close]

BLAST of MC04g0013.1 vs. TAIR 10
Match: AT1G61780.1 (postsynaptic protein-related )

HSP 1 Score: 68.2 bits (165), Expect = 2.3e-12
Identity = 34/55 (61.82%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 1  RWTPYG--NTKFIIYKHAASTPGCQVFHTCAYSKGVCAMCGKRVLDNKFYKQSNV 54
          RW+PY    TK +I K      G +  HTCAYSKGVCAMCGK+VLD K YKQSNV
Sbjct: 45 RWSPYSTCTTKCMICKQQVHQDG-KYCHTCAYSKGVCAMCGKQVLDTKMYKQSNV 98

The following BLAST results are available for this feature:

BLAST of MC04g0013.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3ZC66	4.0e-09	51.79	Cysteine-rich PDZ-binding protein OS=Bos taurus OX=9913 GN=CRIPT PE=1 SV=1	[more]
Q9P021	4.0e-09	51.79	Cysteine-rich PDZ-binding protein OS=Homo sapiens OX=9606 GN=CRIPT PE=1 SV=1	[more]
O70333	4.0e-09	51.79	Cysteine-rich PDZ-binding protein OS=Mus musculus OX=10090 GN=Cript PE=1 SV=1	[more]
Q792Q4	4.0e-09	51.79	Cysteine-rich PDZ-binding protein OS=Rattus norvegicus OX=10116 GN=Cript PE=1 SV...	[more]
Q5ZKB6	6.8e-09	50.00	Cysteine-rich PDZ-binding protein OS=Gallus gallus OX=9031 GN=CRIPT PE=3 SV=1	[more]

BLAST of MC04g0013.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004496774.1	1.64e-18	73.58	cysteine-rich PDZ-binding protein [Cicer arietinum]	[more]
XP_004134750.1	1.64e-18	73.58	cysteine-rich PDZ-binding protein [Cucumis sativus] >XP_008439962.1 PREDICTED: c...	[more]
XP_021866364.1	1.64e-18	73.58	cysteine-rich PDZ-binding protein [Spinacia oleracea]	[more]
KNA15065.1	2.33e-18	73.58	hypothetical protein SOVF_101560, partial [Spinacia oleracea]	[more]
PON31992.1	2.33e-18	73.58	PDZ-binding protein, CRIPT [Parasponia andersonii]	[more]

BLAST of MC04g0013.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CPV5	7.95e-19	73.58	Cysteine-rich PDZ-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A0A0KHE3	7.95e-19	73.58	Cysteine-rich PDZ-binding protein OS=Cucumis sativus OX=3659 GN=Csa_6G514910 PE=...	[more]
A0A1S2XZ43	7.95e-19	73.58	Cysteine-rich PDZ-binding protein OS=Cicer arietinum OX=3827 GN=LOC101506406 PE=...	[more]
A0A1S3B0M5	7.95e-19	73.58	Cysteine-rich PDZ-binding protein OS=Cucumis melo OX=3656 GN=LOC103484593 PE=3 S...	[more]
A0A2P5A629	1.13e-18	73.58	Cysteine-rich PDZ-binding protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14...	[more]

BLAST of MC04g0013.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G61780.1	2.3e-12	61.82	postsynaptic protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019367	PDZ-binding protein, CRIPT	PFAM	PF10235	Cript	coord: 1..51 e-value: 6.7E-11 score: 42.6

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC04g0013	MC04g0013	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC04g0013.1-cds	MC04g0013.1-cds-MC04:120780..120876	CDS
MC04g0013.1-cds	MC04g0013.1-cds-MC04:120981..121042	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC04g0013.1	MC04g0013.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031122	cytoplasmic microtubule organization
molecular_function	GO:0008017	microtubule binding