MC03g0226.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC03g0226.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Ribosomal protein S4
Location	MC03: 5612981 .. 5613331 (-)
Sequence length	351
RNA-Seq Expression	MC03g0226.1
Synteny	MC03g0226.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCAACAAGCAAGAAGAAGACTTAGAAAGAACAAAGAAGTTTGGATCGGAAAAAGTATGCTTAGGCAGTTCCTTCGCTGAGCACAACAGAATGAAGAGGAATTTGTATCATTTTAAATCCCTATTCTTATCGAATAGAAGGAACGAGAAAAACCGAAATCTTCCTACTCGAACAAGAAGTCCTATAGTTTACAACTCTTCTTTATATAGTAATTCGACCTATTGCTCCGCATCCCCCCATCAGTTTACTATGAAGAGCAAAATCAAAAGGATCGAACTACCTACTCATTATTCGGAGGTGAATCATAGAACACTAAAAGCTGTGGTATCTTATGGACCTAACATAGGTCAC

mRNA sequence

TCCAACAAGCAAGAAGAAGACTTAGAAAGAACAAAGAAGTTTGGATCGGAAAAAGTATGCTTAGGCAGTTCCTTCGCTGAGCACAACAGAATGAAGAGGAATTTGTATCATTTTAAATCCCTATTCTTATCGAATAGAAGGAACGAGAAAAACCGAAATCTTCCTACTCGAACAAGAAGTCCTATAGTTTACAACTCTTCTTTATATAGTAATTCGACCTATTGCTCCGCATCCCCCCATCAGTTTACTATGAAGAGCAAAATCAAAAGGATCGAACTACCTACTCATTATTCGGAGGTGAATCATAGAACACTAAAAGCTGTGGTATCTTATGGACCTAACATAGGTCAC

Coding sequence (CDS)

TCCAACAAGCAAGAAGAAGACTTAGAAAGAACAAAGAAGTTTGGATCGGAAAAAGTATGCTTAGGCAGTTCCTTCGCTGAGCACAACAGAATGAAGAGGAATTTGTATCATTTTAAATCCCTATTCTTATCGAATAGAAGGAACGAGAAAAACCGAAATCTTCCTACTCGAACAAGAAGTCCTATAGTTTACAACTCTTCTTTATATAGTAATTCGACCTATTGCTCCGCATCCCCCCATCAGTTTACTATGAAGAGCAAAATCAAAAGGATCGAACTACCTACTCATTATTCGGAGGTGAATCATAGAACACTAAAAGCTGTGGTATCTTATGGACCTAACATAGGTCAC

Protein sequence

SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEVNHRTLKAVVSYGPNIGH

Homology

[Close]

BLAST of MC03g0226.1 vs. ExPASy Swiss-Prot
Match: Q31708 (Ribosomal protein S4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS4 PE=1 SV=2)

HSP 1 Score: 180.3 bits (456), Expect = 1.3e-44
Identity = 97/119 (81.51%), Postives = 102/119 (85.71%), Query Frame = 0


Query: 1   SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRS 60
           S+ QEEDLERTKKFGSEKVCLGSSFAEH RMKRNL   KSLFLS RR +KN NLPTRT S
Sbjct: 222 SSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNL--LKSLFLSKRRKDKNLNLPTRTIS 281

Query: 61  PIVYNS--SLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEVNHRTLKAVVSYGPNIGH 118
           PIVYNS  SLYSNSTYC ASPH+ TMK +IKRIELPTHY EVN+RT KAVV YGPNIGH
Sbjct: 282 PIVYNSSLSLYSNSTYCFASPHKLTMKRRIKRIELPTHYLEVNYRTPKAVVFYGPNIGH 338

[Close]

BLAST of MC03g0226.1 vs. NCBI nr
Match: WP_131796643.1 (hypothetical protein [Candidatus Frankia datiscae])

HSP 1 Score: 226 bits (576), Expect = 3.77e-72
Identity = 113/117 (96.58%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRS 60
           S+ QEEDLERTKKFGSEKVCLGSSFAEHNRMKRN YHFKSLFLSNRRNEKNRNLPTRTRS
Sbjct: 136 SSMQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNFYHFKSLFLSNRRNEKNRNLPTRTRS 195

Query: 61  PIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEVNHRTLKAVVSYGPNIGH 117
           PIVYNSSLYSNSTYCSASPHQFTMK KIKRIELPTHYSEVNHRTLKAVVSYGPNIGH
Sbjct: 196 PIVYNSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLKAVVSYGPNIGH 252

[Close]

BLAST of MC03g0226.1 vs. NCBI nr
Match: YP_009913620.1 (ribosomal protein S4 [Luffa acutangula] >QLJ93050.1 ribosomal protein S4 [Luffa acutangula])

HSP 1 Score: 227 bits (579), Expect = 1.41e-71
Identity = 114/117 (97.44%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRS 60
           S+ QEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYH KSLFLSNRRNEKNRNLPTRTRS
Sbjct: 215 SSMQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTRS 274

Query: 61  PIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEVNHRTLKAVVSYGPNIGH 117
           PIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEVNHRTLKAVVSYGPNIGH
Sbjct: 275 PIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEVNHRTLKAVVSYGPNIGH 331

[Close]

BLAST of MC03g0226.1 vs. NCBI nr
Match: GAY67605.1 (hypothetical protein CUMW_257870 [Citrus unshiu])

HSP 1 Score: 218 bits (556), Expect = 1.51e-70
Identity = 109/117 (93.16%), Postives = 111/117 (94.87%), Query Frame = 0


Query: 1   SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRS 60
           S+ QEED ERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLS RRNEKNRN PTRTRS
Sbjct: 33  SSMQEEDFERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSKRRNEKNRNFPTRTRS 92

Query: 61  PIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEVNHRTLKAVVSYGPNIGH 117
           PIVYNSSLYSNSTYCSASPHQFTMK +IKRIELPTHYSEVNHRT KAVVSYGPNIGH
Sbjct: 93  PIVYNSSLYSNSTYCSASPHQFTMKRRIKRIELPTHYSEVNHRTPKAVVSYGPNIGH 149

[Close]

BLAST of MC03g0226.1 vs. NCBI nr
Match: WP_131747055.1 (hypothetical protein [Candidatus Frankia meridionalis])

HSP 1 Score: 226 bits (576), Expect = 1.61e-70
Identity = 113/117 (96.58%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRS 60
           S+ QEEDLERTKKFGSEKVCLGSSFAEHNRMKRN YHFKSLFLSNRRNEKNRNLPTRTRS
Sbjct: 265 SSMQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNFYHFKSLFLSNRRNEKNRNLPTRTRS 324

Query: 61  PIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEVNHRTLKAVVSYGPNIGH 117
           PIVYNSSLYSNSTYCSASPHQFTMK KIKRIELPTHYSEVNHRTLKAVVSYGPNIGH
Sbjct: 325 PIVYNSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTLKAVVSYGPNIGH 381

[Close]

BLAST of MC03g0226.1 vs. NCBI nr
Match: AUD56962.1 (ribosomal protein subunit S4 [Cinchona pubescens])

HSP 1 Score: 222 bits (565), Expect = 1.76e-70
Identity = 111/117 (94.87%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 1   SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRS 60
           S+ QEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLS RRNEKNRN+PTRTRS
Sbjct: 136 SSMQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSKRRNEKNRNIPTRTRS 195

Query: 61  PIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEVNHRTLKAVVSYGPNIGH 117
           PIVYNSSLYSNSTYCSASPHQFTMK KIKRIELPTHYSEVNHRT KAVVSYGPNIGH
Sbjct: 196 PIVYNSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTPKAVVSYGPNIGH 252

[Close]

BLAST of MC03g0226.1 vs. ExPASy TrEMBL
Match: A0A7D6BZG8 (Ribosomal protein S4 OS=Luffa acutangula OX=56866 GN=rps4 PE=3 SV=1)

HSP 1 Score: 227 bits (579), Expect = 6.82e-72
Identity = 114/117 (97.44%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRS 60
           S+ QEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYH KSLFLSNRRNEKNRNLPTRTRS
Sbjct: 215 SSMQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHLKSLFLSNRRNEKNRNLPTRTRS 274

Query: 61  PIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEVNHRTLKAVVSYGPNIGH 117
           PIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEVNHRTLKAVVSYGPNIGH
Sbjct: 275 PIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEVNHRTLKAVVSYGPNIGH 331

[Close]

BLAST of MC03g0226.1 vs. ExPASy TrEMBL
Match: A0A2H5QTJ6 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_257870 PE=3 SV=1)

HSP 1 Score: 218 bits (556), Expect = 7.30e-71
Identity = 109/117 (93.16%), Postives = 111/117 (94.87%), Query Frame = 0


Query: 1   SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRS 60
           S+ QEED ERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLS RRNEKNRN PTRTRS
Sbjct: 33  SSMQEEDFERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSKRRNEKNRNFPTRTRS 92

Query: 61  PIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEVNHRTLKAVVSYGPNIGH 117
           PIVYNSSLYSNSTYCSASPHQFTMK +IKRIELPTHYSEVNHRT KAVVSYGPNIGH
Sbjct: 93  PIVYNSSLYSNSTYCSASPHQFTMKRRIKRIELPTHYSEVNHRTPKAVVSYGPNIGH 149

[Close]

BLAST of MC03g0226.1 vs. ExPASy TrEMBL
Match: A0A2H4YAG7 (Ribosomal protein subunit S4 OS=Cinchona pubescens OX=50278 GN=rps4 PE=3 SV=1)

HSP 1 Score: 222 bits (565), Expect = 8.51e-71
Identity = 111/117 (94.87%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 1   SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRS 60
           S+ QEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLS RRNEKNRN+PTRTRS
Sbjct: 136 SSMQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSKRRNEKNRNIPTRTRS 195

Query: 61  PIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEVNHRTLKAVVSYGPNIGH 117
           PIVYNSSLYSNSTYCSASPHQFTMK KIKRIELPTHYSEVNHRT KAVVSYGPNIGH
Sbjct: 196 PIVYNSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTPKAVVSYGPNIGH 252

[Close]

BLAST of MC03g0226.1 vs. ExPASy TrEMBL
Match: A0A2H4YAE2 (Ribosomal protein subunit S4 OS=Coptosapelta flavescens OX=86988 GN=rps4 PE=3 SV=1)

HSP 1 Score: 222 bits (565), Expect = 8.51e-71
Identity = 111/117 (94.87%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 1   SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRS 60
           S+ QEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLS RRNEKNRN+PTRTRS
Sbjct: 136 SSMQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSKRRNEKNRNIPTRTRS 195

Query: 61  PIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEVNHRTLKAVVSYGPNIGH 117
           PIVYNSSLYSNSTYCSASPHQFTMK KIKRIELPTHYSEVNHRT KAVVSYGPNIGH
Sbjct: 196 PIVYNSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTPKAVVSYGPNIGH 252

[Close]

BLAST of MC03g0226.1 vs. ExPASy TrEMBL
Match: A0A2H4YAG5 (Ribosomal protein subunit S4 OS=Hillia triflora OX=43499 GN=rps4 PE=3 SV=1)

HSP 1 Score: 222 bits (565), Expect = 8.51e-71
Identity = 111/117 (94.87%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 1   SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRS 60
           S+ QEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLS RRNEKNRN+PTRTRS
Sbjct: 136 SSMQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSKRRNEKNRNIPTRTRS 195

Query: 61  PIVYNSSLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEVNHRTLKAVVSYGPNIGH 117
           PIVYNSSLYSNSTYCSASPHQFTMK KIKRIELPTHYSEVNHRT KAVVSYGPNIGH
Sbjct: 196 PIVYNSSLYSNSTYCSASPHQFTMKRKIKRIELPTHYSEVNHRTPKAVVSYGPNIGH 252

[Close]

BLAST of MC03g0226.1 vs. TAIR 10
Match: AT2G07734.1 (Alpha-L RNA-binding motif/Ribosomal protein S4 family protein )

HSP 1 Score: 187.2 bits (474), Expect = 7.6e-48
Identity = 100/119 (84.03%), Postives = 104/119 (87.39%), Query Frame = 0


Query: 1   SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRS 60
           S+ QEEDLERTKKFGSEKVCLGSSFAEH RMKRNL   KSLFLS RR +KN NLPTRT S
Sbjct: 222 SSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNL--LKSLFLSKRRKDKNLNLPTRTIS 281

Query: 61  PIVYNS--SLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEVNHRTLKAVVSYGPNIGH 118
           PIVYNS  SLYSNSTYC ASPH+ TMK +IKRIELPTHYSEVNHRT KAVVSYGPNIGH
Sbjct: 282 PIVYNSSLSLYSNSTYCFASPHKLTMKRRIKRIELPTHYSEVNHRTPKAVVSYGPNIGH 338

[Close]

BLAST of MC03g0226.1 vs. TAIR 10
Match: ATMG00290.1 (mitochondrial ribosomal protein S4 )

HSP 1 Score: 187.2 bits (474), Expect = 7.6e-48
Identity = 100/119 (84.03%), Postives = 104/119 (87.39%), Query Frame = 0


Query: 1   SNKQEEDLERTKKFGSEKVCLGSSFAEHNRMKRNLYHFKSLFLSNRRNEKNRNLPTRTRS 60
           S+ QEEDLERTKKFGSEKVCLGSSFAEH RMKRNL   KSLFLS RR +KN NLPTRT S
Sbjct: 222 SSMQEEDLERTKKFGSEKVCLGSSFAEHKRMKRNL--LKSLFLSKRRKDKNLNLPTRTIS 281

Query: 61  PIVYNS--SLYSNSTYCSASPHQFTMKSKIKRIELPTHYSEVNHRTLKAVVSYGPNIGH 118
           PIVYNS  SLYSNSTYC ASPH+ TMK +IKRIELPTHYSEVNHRT KAVVSYGPNIGH
Sbjct: 282 PIVYNSSLSLYSNSTYCFASPHKLTMKRRIKRIELPTHYSEVNHRTPKAVVSYGPNIGH 338

The following BLAST results are available for this feature:

BLAST of MC03g0226.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q31708	1.3e-44	81.51	Ribosomal protein S4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS4 PE=1...	[more]

BLAST of MC03g0226.1 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_131796643.1	3.77e-72	96.58	hypothetical protein [Candidatus Frankia datiscae]	[more]
YP_009913620.1	1.41e-71	97.44	ribosomal protein S4 [Luffa acutangula] >QLJ93050.1 ribosomal protein S4 [Luffa ...	[more]
GAY67605.1	1.51e-70	93.16	hypothetical protein CUMW_257870 [Citrus unshiu]	[more]
WP_131747055.1	1.61e-70	96.58	hypothetical protein [Candidatus Frankia meridionalis]	[more]
AUD56962.1	1.76e-70	94.87	ribosomal protein subunit S4 [Cinchona pubescens]	[more]

BLAST of MC03g0226.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7D6BZG8	6.82e-72	97.44	Ribosomal protein S4 OS=Luffa acutangula OX=56866 GN=rps4 PE=3 SV=1	[more]
A0A2H5QTJ6	7.30e-71	93.16	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_257870 PE=3 SV=1	[more]
A0A2H4YAG7	8.51e-71	94.87	Ribosomal protein subunit S4 OS=Cinchona pubescens OX=50278 GN=rps4 PE=3 SV=1	[more]
A0A2H4YAE2	8.51e-71	94.87	Ribosomal protein subunit S4 OS=Coptosapelta flavescens OX=86988 GN=rps4 PE=3 SV...	[more]
A0A2H4YAG5	8.51e-71	94.87	Ribosomal protein subunit S4 OS=Hillia triflora OX=43499 GN=rps4 PE=3 SV=1	[more]

BLAST of MC03g0226.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07734.1	7.6e-48	84.03	Alpha-L RNA-binding motif/Ribosomal protein S4 family protein	[more]
ATMG00290.1	7.6e-48	84.03	mitochondrial ribosomal protein S4	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11831:SF30	RIBOSOMAL PROTEIN S4-RELATED	coord: 3..70
IPR022801	Ribosomal protein S4/S9	PANTHER	PTHR11831	30S 40S RIBOSOMAL PROTEIN	coord: 3..70

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC03g0226	MC03g0226	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC03g0226.1-cds	MC03g0226.1-cds-MC03:5612981..5613331	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC03g0226.1	MC03g0226.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding