MC02g1347.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC02g1347.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Ribulose bisphosphate carboxylase large chain
Location	MC02: 16081055 .. 16081231 (+)
Sequence length	177
RNA-Seq Expression	MC02g1347.1
Synteny	MC02g1347.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGTGGAAAGGTTTCCTCGGGCCAGGCGGAGATTGGCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCACGGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATAACAGGC

mRNA sequence

GCGTGGAAAGGTTTCCTCGGGCCAGGCGGAGATTGGCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCACGGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATAACAGGC

Coding sequence (CDS)

GCGTGGAAAGGTTTCCTCGGGCCAGGCGGAGATTGGCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCACGGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATAACAGGC

Protein sequence

AWKGFLGPGGDWPSSAKAEGSLTARPTRRARTKVGLSDPTVPSGRAVAQRIKVTLGITG

Homology

[Close]

BLAST of MC02g1347.1 vs. NCBI nr
Match: RZC44126.1 (hypothetical protein C5167_037083 [Papaver somniferum])

HSP 1 Score: 111 bits (277), Expect = 2.35e-30
Identity = 56/59 (94.92%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 1  AWKGFLGPGGDWPSSAKAEGSLTARPTRRARTKVGLSDPTVPSGRAVAQRIKVTLGITG 59
          A KGFLGP GDWPSSAKAEGSLTARPTRRA TKVGLSDPTVPSGRAVAQRIKVTLGITG
Sbjct: 20 ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG 78

[Close]

BLAST of MC02g1347.1 vs. NCBI nr
Match: QCE15173.1 (hypothetical protein DEO72_LG11g2182 [Vigna unguiculata])

HSP 1 Score: 111 bits (277), Expect = 2.02e-29
Identity = 56/59 (94.92%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 1   AWKGFLGPGGDWPSSAKAEGSLTARPTRRARTKVGLSDPTVPSGRAVAQRIKVTLGITG 59
           A KGFLGP GDWPSSAKAEGSLTARPTRRA TKVGLSDPTVPSGRAVAQRIKVTLGITG
Sbjct: 95  ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG 153

[Close]

BLAST of MC02g1347.1 vs. NCBI nr
Match: KAD7116982.1 (hypothetical protein E3N88_04250 [Mikania micrantha])

HSP 1 Score: 108 bits (271), Expect = 4.32e-29
Identity = 55/59 (93.22%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1   AWKGFLGPGGDWPSSAKAEGSLTARPTRRARTKVGLSDPTVPSGRAVAQRIKVTLGITG 59
           A KGFLGP GDWPSSAKAEGSLTARPTRRA TKV LSDPTVPSGRAVAQRIKVTLGITG
Sbjct: 48  ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVSLSDPTVPSGRAVAQRIKVTLGITG 106

[Close]

BLAST of MC02g1347.1 vs. NCBI nr
Match: KAC9651022.1 (hypothetical protein E3N88_45460 [Mikania micrantha])

HSP 1 Score: 111 bits (277), Expect = 5.79e-29
Identity = 56/59 (94.92%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 1   AWKGFLGPGGDWPSSAKAEGSLTARPTRRARTKVGLSDPTVPSGRAVAQRIKVTLGITG 59
           A KGFLGP GDWPSSAKAEGSLTARPTRRA TKVGLSDPTVPSGRAVAQRIKVTLGITG
Sbjct: 134 ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG 192

[Close]

BLAST of MC02g1347.1 vs. NCBI nr
Match: KAD4981698.1 (hypothetical protein E3N88_18369 [Mikania micrantha])

HSP 1 Score: 111 bits (277), Expect = 6.10e-29
Identity = 56/59 (94.92%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 1   AWKGFLGPGGDWPSSAKAEGSLTARPTRRARTKVGLSDPTVPSGRAVAQRIKVTLGITG 59
           A KGFLGP GDWPSSAKAEGSLTARPTRRA TKVGLSDPTVPSGRAVAQRIKVTLGITG
Sbjct: 136 ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG 194

[Close]

BLAST of MC02g1347.1 vs. ExPASy TrEMBL
Match: A0A4Y7I7X0 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_037083 PE=4 SV=1)

HSP 1 Score: 111 bits (277), Expect = 1.14e-30
Identity = 56/59 (94.92%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 1  AWKGFLGPGGDWPSSAKAEGSLTARPTRRARTKVGLSDPTVPSGRAVAQRIKVTLGITG 59
          A KGFLGP GDWPSSAKAEGSLTARPTRRA TKVGLSDPTVPSGRAVAQRIKVTLGITG
Sbjct: 20 ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG 78

[Close]

BLAST of MC02g1347.1 vs. ExPASy TrEMBL
Match: A0A4D6NMW7 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g2182 PE=4 SV=1)

HSP 1 Score: 111 bits (277), Expect = 9.80e-30
Identity = 56/59 (94.92%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 1   AWKGFLGPGGDWPSSAKAEGSLTARPTRRARTKVGLSDPTVPSGRAVAQRIKVTLGITG 59
           A KGFLGP GDWPSSAKAEGSLTARPTRRA TKVGLSDPTVPSGRAVAQRIKVTLGITG
Sbjct: 95  ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG 153

[Close]

BLAST of MC02g1347.1 vs. ExPASy TrEMBL
Match: A0A5N6PUG6 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_04250 PE=4 SV=1)

HSP 1 Score: 108 bits (271), Expect = 2.09e-29
Identity = 55/59 (93.22%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 1   AWKGFLGPGGDWPSSAKAEGSLTARPTRRARTKVGLSDPTVPSGRAVAQRIKVTLGITG 59
           A KGFLGP GDWPSSAKAEGSLTARPTRRA TKV LSDPTVPSGRAVAQRIKVTLGITG
Sbjct: 48  ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVSLSDPTVPSGRAVAQRIKVTLGITG 106

[Close]

BLAST of MC02g1347.1 vs. ExPASy TrEMBL
Match: A0A5N6L932 (Ribulose bisphosphate carboxylase large chain OS=Mikania micrantha OX=192012 GN=E3N88_45460 PE=3 SV=1)

HSP 1 Score: 111 bits (277), Expect = 2.80e-29
Identity = 56/59 (94.92%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 1   AWKGFLGPGGDWPSSAKAEGSLTARPTRRARTKVGLSDPTVPSGRAVAQRIKVTLGITG 59
           A KGFLGP GDWPSSAKAEGSLTARPTRRA TKVGLSDPTVPSGRAVAQRIKVTLGITG
Sbjct: 134 ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG 192

[Close]

BLAST of MC02g1347.1 vs. ExPASy TrEMBL
Match: A0A5N6NM13 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_18369 PE=4 SV=1)

HSP 1 Score: 111 bits (277), Expect = 2.95e-29
Identity = 56/59 (94.92%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 1   AWKGFLGPGGDWPSSAKAEGSLTARPTRRARTKVGLSDPTVPSGRAVAQRIKVTLGITG 59
           A KGFLGP GDWPSSAKAEGSLTARPTRRA TKVGLSDPTVPSGRAVAQRIKVTLGITG
Sbjct: 136 ACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRAVAQRIKVTLGITG 194

The following BLAST results are available for this feature:

BLAST of MC02g1347.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC02g1347.1 vs. NCBI nr


Match Name	E-value	Identity	Description
RZC44126.1	2.35e-30	94.92	hypothetical protein C5167_037083 [Papaver somniferum]	[more]
QCE15173.1	2.02e-29	94.92	hypothetical protein DEO72_LG11g2182 [Vigna unguiculata]	[more]
KAD7116982.1	4.32e-29	93.22	hypothetical protein E3N88_04250 [Mikania micrantha]	[more]
KAC9651022.1	5.79e-29	94.92	hypothetical protein E3N88_45460 [Mikania micrantha]	[more]
KAD4981698.1	6.10e-29	94.92	hypothetical protein E3N88_18369 [Mikania micrantha]	[more]

BLAST of MC02g1347.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4Y7I7X0	1.14e-30	94.92	Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_037083 PE=4 SV=1	[more]
A0A4D6NMW7	9.80e-30	94.92	Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g2182 PE=4 SV=...	[more]
A0A5N6PUG6	2.09e-29	93.22	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_04250 PE=4 SV=1	[more]
A0A5N6L932	2.80e-29	94.92	Ribulose bisphosphate carboxylase large chain OS=Mikania micrantha OX=192012 GN=...	[more]
A0A5N6NM13	2.95e-29	94.92	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_18369 PE=4 SV=1	[more]

BLAST of MC02g1347.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC02g1347	MC02g1347	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC02g1347.1-cds	MC02g1347.1-cds-MC02:16081055..16081231	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC02g1347.1	MC02g1347.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0009853	photorespiration
biological_process	GO:0019253	reductive pentose-phosphate cycle
cellular_component	GO:0031361	integral component of thylakoid membrane
cellular_component	GO:0009536	plastid
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity