MC02g0300.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC02g0300.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Voltage-dependent T-type calcium channel subunit alpha-1I (Ca(V)3.3) like
Location	MC02: 2708400 .. 2708603 (-)
Sequence length	204
RNA-Seq Expression	MC02g0300.1
Synteny	MC02g0300.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATGGACACGACGGTGGGCGCGCTTCTGGGGAGGCTGGGCCGCCATTGCTACGCCGTACTGTGCTTGGGAGTGCTGCTTCTGACGGTGGCCGTGGTTCACTACGTCGGCGACGGGGAGCCCACGGACCCACGCCAGAGGACCACGCGCCGCCTTCGCGTCTTGTACGGCCCGCCTCAACGTGGCGCCGACGCCCGCCGT

mRNA sequence

ATGGAGATGGACACGACGGTGGGCGCGCTTCTGGGGAGGCTGGGCCGCCATTGCTACGCCGTACTGTGCTTGGGAGTGCTGCTTCTGACGGTGGCCGTGGTTCACTACGTCGGCGACGGGGAGCCCACGGACCCACGCCAGAGGACCACGCGCCGCCTTCGCGTCTTGTACGGCCCGCCTCAACGTGGCGCCGACGCCCGCCGT

Coding sequence (CDS)

ATGGAGATGGACACGACGGTGGGCGCGCTTCTGGGGAGGCTGGGCCGCCATTGCTACGCCGTACTGTGCTTGGGAGTGCTGCTTCTGACGGTGGCCGTGGTTCACTACGTCGGCGACGGGGAGCCCACGGACCCACGCCAGAGGACCACGCGCCGCCTTCGCGTCTTGTACGGCCCGCCTCAACGTGGCGCCGACGCCCGCCGT

Protein sequence

MEMDTTVGALLGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRQRTTRRLRVLYGPPQRGADARR

Homology

[Close]

BLAST of MC02g0300.1 vs. NCBI nr
Match: KAE8647058.1 (hypothetical protein Csa_023003, partial [Cucumis sativus])

HSP 1 Score: 107 bits (268), Expect = 6.00e-29
Identity = 51/66 (77.27%), Postives = 56/66 (84.85%), Query Frame = 0


Query: 1  MEMDTTVGALLGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRQRTTRRLRVLYGPP 60
          ME +T + A+LGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPR+RT RRLR L+G  
Sbjct: 1  MEAETALAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERTKRRLRPLHGSS 60

Query: 61 QRGADA 66
            G DA
Sbjct: 61 ILGEDA 66

[Close]

BLAST of MC02g0300.1 vs. NCBI nr
Match: KAG7010620.1 (Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110 bits (275), Expect = 8.06e-29
Identity = 50/58 (86.21%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1  MEMDTTVGALLGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRQRTTRRLRVLYG 58
          MEM+T VGA+LGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPR+R+ RRLR L+G
Sbjct: 1  MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLHG 58

[Close]

BLAST of MC02g0300.1 vs. NCBI nr
Match: KAG6570773.1 (Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110 bits (275), Expect = 2.03e-28
Identity = 50/58 (86.21%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1  MEMDTTVGALLGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRQRTTRRLRVLYG 58
          MEM+T VGA+LGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPR+R+ RRLR L+G
Sbjct: 1  MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLHG 58

[Close]

BLAST of MC02g0300.1 vs. NCBI nr
Match: XP_023512260.1 (syntaxin-71-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110 bits (275), Expect = 4.33e-28
Identity = 50/58 (86.21%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1  MEMDTTVGALLGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRQRTTRRLRVLYG 58
          MEM+T VGA+LGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPR+R+ RRLR L+G
Sbjct: 1  MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLHG 58

[Close]

BLAST of MC02g0300.1 vs. NCBI nr
Match: VVA31225.1 (Hypothetical predicted protein [Prunus dulcis])

HSP 1 Score: 76.6 bits (187), Expect = 1.36e-16
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 10 LLGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRQRTTRRLRVLYGPPQRGADA 66
          LLG+LGR CYAVLCLGV++L V +V+YVG  E  DP +RT RRLR ++GPP R + +
Sbjct: 7  LLGKLGRQCYAVLCLGVIILAVTLVNYVGAEEQKDPMERTRRRLRAIHGPPLRSSGS 63

[Close]

BLAST of MC02g0300.1 vs. ExPASy TrEMBL
Match: A0A0A0KC65 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G293180 PE=4 SV=1)

HSP 1 Score: 108 bits (270), Expect = 1.79e-29
Identity = 52/68 (76.47%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1  MEMDTTVGALLGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRQRTTRRLRVLYGPP 60
          ME +T + A+LGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPR+RT RRLR L+G  
Sbjct: 1  MEAETALAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERTKRRLRPLHGSS 60

Query: 61 QRGADARR 68
            G DA R
Sbjct: 61 ILGEDAAR 68

[Close]

BLAST of MC02g0300.1 vs. ExPASy TrEMBL
Match: A0A5E4FUM3 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B035406 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.58e-17
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 10 LLGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRQRTTRRLRVLYGPPQRGADA 66
          LLG+LGR CYAVLCLGV++L V +V+YVG  E  DP +RT RRLR ++GPP R + +
Sbjct: 7  LLGKLGRQCYAVLCLGVIILAVTLVNYVGAEEQKDPMERTRRRLRAIHGPPLRSSGS 63

[Close]

BLAST of MC02g0300.1 vs. ExPASy TrEMBL
Match: A0A7N2KN99 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 9.58e-17
Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 7  VGALLGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRQRTTRRLRVLYG 58
          V  LLG+L RHCYAVLCLGVLLL+V + HYV   EP+DPR+RT RRLR  +G
Sbjct: 4  VDGLLGKLVRHCYAVLCLGVLLLSVTIAHYVPAAEPSDPRERTIRRLRASHG 55

[Close]

BLAST of MC02g0300.1 vs. ExPASy TrEMBL
Match: A0A251NMS2 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G098100 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.75e-16
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 10 LLGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRQRTTRRLRVLYGPP 60
          LLG+LGR CYAVLCLGV++L V +V+YVG  E  DP +RT RRLR ++GPP
Sbjct: 7  LLGKLGRQCYAVLCLGVIILAVTLVNYVGTEEQKDPMERTRRRLRAIHGPP 57

[Close]

BLAST of MC02g0300.1 vs. ExPASy TrEMBL
Match: B9SK55 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1401120 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.42e-16
Identity = 37/60 (61.67%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 6  TVGALLGRLGRHCYAVLCLGVLLLTVAVVHYVGD--GEP-TDPRQRTTRRLRVLYGPPQR 62
          TV  LLGRLGR CYAVLCLG++L+ V++  YVGD  GE  +DP++RT RRLR ++GPP R
Sbjct: 3  TVQGLLGRLGRQCYAVLCLGMILVIVSIARYVGDDGGEMISDPKERTRRRLRAIHGPPLR 62

The following BLAST results are available for this feature:

BLAST of MC02g0300.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC02g0300.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647058.1	6.00e-29	77.27	hypothetical protein Csa_023003, partial [Cucumis sativus]	[more]
KAG7010620.1	8.06e-29	86.21	Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma su...	[more]
KAG6570773.1	2.03e-28	86.21	Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma su...	[more]
XP_023512260.1	4.33e-28	86.21	syntaxin-71-like [Cucurbita pepo subsp. pepo]	[more]
VVA31225.1	1.36e-16	59.65	Hypothetical predicted protein [Prunus dulcis]	[more]

BLAST of MC02g0300.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC65	1.79e-29	76.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G293180 PE=4 SV=1	[more]
A0A5E4FUM3	6.58e-17	59.65	Uncharacterized protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B035406 PE=4 SV=1	[more]
A0A7N2KN99	9.58e-17	67.31	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A251NMS2	1.75e-16	64.71	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G098100 PE=4 SV=1	[more]
B9SK55	2.42e-16	61.67	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1401120 PE=4 SV=1	[more]

BLAST of MC02g0300.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC02g0300	MC02g0300	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC02g0300.1-cds	MC02g0300.1-cds-MC02:2708400..2708603	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC02g0300.1	MC02g0300.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045490	pectin catabolic process
biological_process	GO:0050896	response to stimulus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0030599	pectinesterase activity