MC01g_new0241.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC01g_new0241.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC01: 9671763 .. 9674846 (-)
Sequence length	237
RNA-Seq Expression	MC01g_new0241.1
Synteny	MC01g_new0241.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAGGATCGAACTTACAACCTCTTAATTGGAGATATATGTCAATTATCACTTAATTATGTCGGTCCGGACCAGTGGAACGAGGGAAAGCGGCTAGGCTAGGTTCAGGGGTACAATTGGAAGAAATTCTGTTTGGAGGCACAATTTAATCATCATCCCTCCTCCTCCATCCCTTTATTCTATGAACATTCAATCGCTTGCTTTTCTTTTCACGCACAACTGAAATTTCTGCTCCATTTCTGATCTTTCGATCGATTTCTCTCAAGGTTCTCCACTCTCGCTCGATTTTTTTTGCTTCTTTGTTTCTGATTCAATCATCTTCCCTCCCTCTGTCACTGTTAATTGCTTTTCTTGTTCATGTATGAATGAATTTGTTTCGTTTGATAAATTTGTATGATTCGTTTCGTTATTGCTTTGATCCATGGAAGTTTTTACTACCGACTTGTTTTTTATGTTTTTCATTTCTTATTGATCGATGTTTTGCTTTTGCTTATTGCCTCTCTCTGTTTTTCATTTCATACTTACTGGAGTTCGATTATGCCTCTGTTTATGCTCGATCTCTTATGAATGTTTTCTGTGTAGCCTTCATACTTTTCAAGAACTAAACTCGATCGTTTCTGAATCTTATCTATCGAACTTGAGCTCCATCGATTGGCTAATTTTTCTTTTGCCGGAAACAGTTTTCGTCATTTGCTTTCTCGATAGAGCATGATTCCGATATATCATGATCCATTGTGAGTGTTGAATTTAATTATTTAAGTGAATGGCTATTTTCGATGATTTGTTTCGTTCTTGTTTGGATCCATGGCTGCTCTTCTCGCATTGTACTTTTCAAATTCGAAGCCCTAGCTTCTCTCTCTGTTTTTCGTTTCTTACAAGCTAAGCTCGACTTTATGAATGTTTTCCGCTCAGCCTTCATACTTTTCGAGAACTACAAACTCCATCGTCTTTCTTATCTGTGGAACTTGAGCTCCATCGATCGCTAATTTCTTTTCTTCTGCAGGAAACAGTTTGAGTTTGATTGTTCGGTATTCATTTGCTTTCTCGATAGTGCATGATTCCGATATATCCTGATTGATTTATCTGTTTTTAGATTTACAATCGTGAAGATTTCGCAAAAAGTTTAGATATCTTTTGGCCATAATTTGCTGCTGTACTTATTTGCAGTTGTTTTACTTGCAATTGCGTAACTCTTGAAAAAAAAAAAACTCAAAAAAATCAGAAAACAAATTAGTTAGAAATTAGAATCACGACTTCCCTCTCCACCTCTTTTCCGCGCTTTCAAATCCCCTCGACCTCAAAATTCCTCTCCCTCCCTGATTTTCCATTTCTTTTTTTTATCCATCTCTAACTATTTCATGATTTTCAGATGAAATGGATCCGAACGAAATTAAAATGAGGCTAAACAACTGCGCGGGGATTCTGAGCAAAACTGTAGAAGAGGTTGATACTCTTAAACAGCAACTCCAGGAGCTTATTACGGTAATGGCACTCTTATTTCTTTTACAAAATTTCCATTCTCATCCAATAATTCAACTAAAATTATGTGCAAATAGTTGAATATGGACCGAGGTGGCACCAGCCAAGGCGGAGTGACTGGCAACTCATCTCCTGCAAGATCTACTAGTCCGGTAATGACATAAAATTCTCTAACAAGTTTATTAACAATTCTAAAAATAAACTTCACGTGAGAATATTTTTGCTAAATTTCTACACACTAATTATTGGAAGTTTAGCTGTTAATTAAGTTTCTTAATTTTTGTATTCAGTTTTAATACTAATATGCTAAAACGCCTTCTAATCATTCTACTCTGTACTCAACTGTTTTTTGAAAAAAAAAATTATATTGGAATCAGTAGCAAAATTCTTTTATATATTTCAATATAGGTTGGTCCTTAAGTTTGTAAAAATATTCTAGATGGTCCTTAAATTACTTTGATCGTTAGTTGACTAACATTAAAATGACGTGGCAGTTAATTTGCTTACTGTACTTTGTTAATTTGACAAAATATATTAATTTAATAACATTTATAGTGTGATTGGACATTCGATCTTCTTCCCTCTTCTCCTCCGGCAAGCCTCACCACTACCATTTATATACTTCTGCCGATCGTCCCGTTGCCTTAAGCAACATACCTCGCCGTCGCCGGGGCTTCTCATTCTGTATAAGCTCTCAAATCATTTGTCGCAATTTCGTCCAATTTCATCCCAGGCGTAGACGTAAGTCTCTCTCTTATTTTTGCGCCACTTCATTGATCTTTGGTTTTGAAAGTGAGGCCTACGTTCGAGGATGAAATTGAACGAAATTACAGCAAATGATTTGAGTGTTATCCAGAACGAGAAGCCTTGACGATGATGAGGTATGTTGCCTAAGGCAACGGGACGACCAGCGGAAATATAGAAATGACGATGGTGAGGTTCGTCGGAGGAGAAGAGGGAAGGAGATGGAATGTCCAGTCACACTATAAATATTATTAAACTAATATATTTTGTCAAATTAACAAAGTACAGTAAGCAAATCAACTGTCACATCATTTTGATGTTAGTCAACTAACGATCAAAGTAATTTAAGGATCATTTAGAATCATTTTACAAATTCCATGGACCAAATGTGTTTATTTTCAAGGACCAAATAGATACATATTCTAAATTTTATGGACCAAAAAATAAAACTTGAGGGATTAAATAGACACCTGCACCCAAAACCAAAACCAAAAGTGTATTTTTTTCAAAAATAAAATTGAAGATATTGACCTTGTCGAAATGTGTTGGCTCATAGAAGAAGTGCAAGAGAAGACAAATCAGACGATGTTACTTGCGATTGTGCATATGAAACAAGAATCCCATGTTTTAGCGTGTAGGGCTGTCAAAATACAAAACTACGAAGGCTAAGGATCCTTTCCCCTTTTGGCTATAAGTGAGTTGGAATTGAGATATTAATTTTAAAAAAATGATAATAATAAAAACAAGTAATAGAGATCTAAGAATTATAAAGTGAATGTCAAAAGCTCAACTCGTTAAAAGACATCAATCTTCAACCAAAAAATTGTAAGTTCAAATTTCTACCTTTACCTATTGTACGCAAG

mRNA sequence

ATGGATCCGAACGAAATTAAAATGAGGCTAAACAACTGCGCGGGGATTCTGAGCAAAACTGTAGAAGAGGTTGATACTCTTAAACAGCAACTCCAGGAGCTTATTACGTTGAATATGGACCGAGGTGGCACCAGCCAAGGCGGAGTGACTGGCAACTCATCTCCTGCAAGATCTACTAGTCCGAAGAAGTGCAAGAGAAGACAAATCAGACGATGTTACTTGCGATTGTGCATATGA

Coding sequence (CDS)

ATGGATCCGAACGAAATTAAAATGAGGCTAAACAACTGCGCGGGGATTCTGAGCAAAACTGTAGAAGAGGTTGATACTCTTAAACAGCAACTCCAGGAGCTTATTACGTTGAATATGGACCGAGGTGGCACCAGCCAAGGCGGAGTGACTGGCAACTCATCTCCTGCAAGATCTACTAGTCCGAAGAAGTGCAAGAGAAGACAAATCAGACGATGTTACTTGCGATTGTGCATATGA

Protein sequence

MDPNEIKMRLNNCAGILSKTVEEVDTLKQQLQELITLNMDRGGTSQGGVTGNSSPARSTSPKKCKRRQIRRCYLRLCI

Homology

The following BLAST results are available for this feature:

BLAST of MC01g_new0241.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC01g_new0241.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC01g_new0241.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC01g_new0241.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 17..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..63

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC01g_new0241	MC01g_new0241	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC01g_new0241.1-cds	MC01g_new0241.1-cds-MC01:9672016..9672069	CDS
MC01g_new0241.1-cds	MC01g_new0241.1-cds-MC01:9673218..9673292	CDS
MC01g_new0241.1-cds	MC01g_new0241.1-cds-MC01:9673367..9673474	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC01g_new0241.1	MC01g_new0241.1-protein	polypeptide