MC01g0158.1 (mRNA) Bitter gourd (Dali-11) v1

Overview
NameMC01g0158.1
TypemRNA
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC01: 7357765 .. 7358136 (+)
Sequence length372
RNA-Seq ExpressionMC01g0158.1
SyntenyMC01g0158.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGACAATAGCAAAGACATTGGAAGTAAGTGACATAAATGGGACATTGGTACTCAAACAAGATGAGATCCAAGAGAATTTACTCAATATTTTTTCGAGGAAGATAGCGAGGGACGAAGAGAATGGAGTGAACATAACTTTATTCGACACGAAGAGAAAGGAATACATAGAAACAACTATGAAGAAGTCCGCGACTGGTGATGAATTCTATATCAAATGGGAAGCCGAAGGCAAAGGATATGTTGTTGAAGATGAGATTGTGATGCGTTGGAGTCAAAAGAAAGAACACCTCACTTACAAGGTCCTTGAAATTGCTCCTAGTAGAACATATCCAGAAATTTCTTGCTGCTCCTCCCCCAAAAAAAAGTCTTTC

mRNA sequence

TGGACAATAGCAAAGACATTGGAAGTAAGTGACATAAATGGGACATTGGTACTCAAACAAGATGAGATCCAAGAGAATTTACTCAATATTTTTTCGAGGAAGATAGCGAGGGACGAAGAGAATGGAGTGAACATAACTTTATTCGACACGAAGAGAAAGGAATACATAGAAACAACTATGAAGAAGTCCGCGACTGGTGATGAATTCTATATCAAATGGGAAGCCGAAGGCAAAGGATATGTTGTTGAAGATGAGATTGTGATGCGTTGGAGTCAAAAGAAAGAACACCTCACTTACAAGGTCCTTGAAATTGCTCCTAGTAGAACATATCCAGAAATTTCTTGCTGCTCCTCCCCCAAAAAAAAGTCTTTC

Coding sequence (CDS)

TGGACAATAGCAAAGACATTGGAAGTAAGTGACATAAATGGGACATTGGTACTCAAACAAGATGAGATCCAAGAGAATTTACTCAATATTTTTTCGAGGAAGATAGCGAGGGACGAAGAGAATGGAGTGAACATAACTTTATTCGACACGAAGAGAAAGGAATACATAGAAACAACTATGAAGAAGTCCGCGACTGGTGATGAATTCTATATCAAATGGGAAGCCGAAGGCAAAGGATATGTTGTTGAAGATGAGATTGTGATGCGTTGGAGTCAAAAGAAAGAACACCTCACTTACAAGGTCCTTGAAATTGCTCCTAGTAGAACATATCCAGAAATTTCTTGCTGCTCCTCCCCCAAAAAAAAGTCTTTC

Protein sequence

WTIAKTLEVSDINGTLVLKQDEIQENLLNIFSRKIARDEENGVNITLFDTKRKEYIETTMKKSATGDEFYIKWEAEGKGYVVEDEIVMRWSQKKEHLTYKVLEIAPSRTYPEISCCSSPKKKSF
Homology
[Close]
BLAST of MC01g0158.1 vs. NCBI nr
Match: KAG6575832.1 (hypothetical protein SDJN03_26471, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 69.3 bits (168), Expect = 3.67e-12
Identity = 44/126 (34.92%), Postives = 67/126 (53.17%), Query Frame = 0 

Query: 1   WTIAKTLEVSDINGTLVLKQDE----IQENLLNIFSRKIARDEE----NGVNITLFDTKR 60
           WT+ K L+ +D+NG L L++D+    I  NL   +SR   RD +    N   ITLFD   
Sbjct: 5   WTMIKKLQEADMNGLLQLREDDVDTDINTNLFRWWSRSKVRDLKKQIGNEAKITLFDENT 64

Query: 61  KEYIETTMKKSATGDEFYIKWEAEGKGYVVEDEIVMRWSQKKEHLTYKVLEIAPSRTYPE 118
            E + TT++   T   ++I+W+ + K Y    +++M W  K   L YKVL+I     +PE
Sbjct: 65  NEVMHTTIRWLGT-PRYHIEWDVKNKPYASGQDMLMGWDLKYNRLAYKVLQIP----FPE 124

[Close]
BLAST of MC01g0158.1 vs. NCBI nr
Match: KAG6575830.1 (hypothetical protein SDJN03_26469, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.2 bits (160), Expect = 5.76e-11
Identity = 43/126 (34.13%), Postives = 69/126 (54.76%), Query Frame = 0 

Query: 1   WTIAKTLEVSDINGTLVLKQDE----IQENLLNIFSRKIARDEE----NGVNITLFDTKR 60
           WT+ K LE +D+NG L L++D+    I+ NL N + R   RD +    + V I L+D   
Sbjct: 5   WTMIKKLEDADMNGLLQLREDDEDADIRANLFNWWPRSKVRDLKRVVGSEVRIILYDVNM 64

Query: 61  KEYIETTMKKSATGDEFYIKWEAEGKGYVVEDEIVMRWSQKKEHLTYKVLEIAPSRTYPE 117
            + I+TTM+       ++I+W+ + K Y   D+++M W  +   L YK+++      YPE
Sbjct: 65  DQAIQTTMRWLGMA-RYHIEWDIQNKPYSSGDDMLMFWDLRYNRLAYKIIQTY----YPE 124

The following BLAST results are available for this feature:
BLAST of MC01g0158.1 vs.
Match NameE-valueIdentityDescription
BLAST of MC01g0158.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6575832.13.67e-1234.92hypothetical protein SDJN03_26471, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6575830.15.76e-1134.13hypothetical protein SDJN03_26469, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of MC01g0158.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MC01g0158.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MC01g0158MC01g0158gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MC01g0158.1-cdsMC01g0158.1-cds-MC01:7357765..7358136CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MC01g0158.1MC01g0158.1-proteinpolypeptide