MC00g_new0673.1 (mRNA) Bitter gourd (Dali-11) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGAAGGCGTTTTTAAGGCCGACGAGCTTTGCGGTTGAAGGGGGATTTGAATGGTGGAATGAGATCGACGAATCGGAGCAATGGCAGAATGGGATTTACTACTTCTTGGCTGCCTCTTATGGCATCATTTCCCTCATTGCCTTAGTACTCCACTCTTCTCTTACCCCTTTATGCTCTTTTCGTTCATTTTCTTCGCAGTTCCGGAGTTGTTTATCTAATTTAATGGCCGTATAACGCGATTGTTTGTTTATTTGTTTGTTTGTTTTGTTTTTCTTAGAAAGCATGTTGTTTTGTTGAGTTCGTGTCTTTATTGGGATTGACTGGTTTTATCTGTCTTGTGCTGTAATCTCGTGCCTCACTTTTCTGTTCAAGATAAAACAGGGCTTTCCTCCCGATGGACAAGATCCATAATTGTACTCTCGTGTACCATCAAATTATCGACGAATATAAGTGTTAAGTGTTGATAATTGATTGAATTTACTGTAGCCCATCGGCACAAGTTTTTGAGTTACGGTGGTTTAATATGATATCGGAGGAGGGCTAGAGTTGGGAATGAAGTTAAAACCCCATGCCCACCCATCTTAAGAATTAATTCCTATGGGTTTCCCAGCACCAAATGTTGTAGCGGGCGTCGGGCGGTTGTCCTGTGAAATTAGTTAAGGTGCATGTAAACTAGCTCAGACACCCGAAGATATAAAAAAAAGGAAAAACGGTATCGGTGGAATGTCATTTCTAAGTCCACTACCACGAGTAGGGGAGTGTTAAGGGTTAATAAAGGATTAAATTTACCGTCCAATGAATTGAGATCTCTCACATATTCAGTTTGTTTGAAGTTTTAAAATAAAATACTCTGTGTGTGGGTTTGTCGTGAGCGTATACTGTATGTGTAAGCTGATAAAAAAGAACTGGATTTTTGGCTTACTTTGAAGAGAGGTTATCTCGGTTCCACTCTCTTTATGAGTTAGGATTTAGTACTTATTGTAAGGTAATTAAGAATGATATGGTGGAGTGTCAACTGTCCAATATGCCCTTGGACAATCAGGATTTATTGTGGGCATTCCGTCTTAGTTTGTTTCATTTGCTTCACTTTCTTCCTCATTTATATCCAACAAGAAAGAGAGTATGACCAAGCCAAGTGGAACCCTTTATGCAGTTTCTTGATAACTTTTGAAATTTACAAATGTAATAAAAACTTTAACCAGATTTTGTAAGTTCGATTAGATTTCTTGGGAAAAAGAACACGATAATTGGTTTGGTCTTTGTAATTAAAGCCTAATACTTAGAGTAATTGCTCAAGTTTTCAGGTTCAACTTATCCGAATTCAAATAAGAGTACCAGAATATGGGTGGACAACACAAAAGGCGTTCCATTTGATGAATTTCATTGTAAATGGATGTAAGATTGTATATTTGTTAATTTTTATTTATTTTTAATTATACTTGATGAGTAAATGTACCTTATTTGCATTTTGATAGTGAGGGCTATTCTCTTTGGGCTTTATAAGAGTGTTTTCCTCATTCGGCCAAAGGTAGGTTTCTTATATTAATTGTGATAATGCCAACAAGGATTTGTAGATTATTAATGTCCTATCGAAGCTATGGTTATCGAGTATATCTAGGCCTCATTTTGATATTGTAGTAATACCATATTGACATTTATTTATTTTGTAACTATATGAAACATCCAGAAGGCTTTCTGAAGGTGAAATTGATAAATAAATATAAACACTCAAAAGCCTTGTTTCCTGATTTCTGTTGGTCAAGAAAATCCAGGGATTTCTTCCTCCTCTGACACTGGGAACCATAACATTGTTAGATGAAGATTTATTGCATTGTGTTAATATTGTTACCCATCATAATCCACAGTGCAGCAGAGCATCATATTCCCATGCAAAAAAAGCAAGTCAATATATAGACTTAAATTGATAATCCAGATATTCAGAGAGATCCACATACCTTTTCCCATGATGTAACTACGACTATTTTCTCTGAACTATATGGGTTGGAACTTTCATGTTGGTAAAGGCTCTTGAAATGGTGGTTATGGAGATTCCTGGACTTCTATTTTTTTCAACATACACTCTGCTTGTTCTATTTTGGGCTGAGATATACCATCAGGTACAAGAATCATTATTCTAATTAATCTGGACGAAGTTATGTTACATATTATATCAATCCTGTGCTAGAATTTTCATTGGTAATCCATTTAGGTGATTTTTATTCTCTCAGGCACGGAGTCTTCCTATTGATAAACTTAAGCCCACTTACTGTATCATCAATGGAGTTGTGTATCTTACACAGGTAAGATAGAATATGTCACAACCAAAAGTTGTCTGTACAATGTGAAAACAGAATGAACTGAAATTGGTTGATTTGTTTATATTAATTTTTTCTTGTCAATTATTTGTCATTGTGTTGCAGATCTGCATTTGGATATTTGTGATGTTAAGCCGAACACATGGTGCAGTTATAGCTGCTAAGCTCTTCTTTTCAGGTTGCAGTTTGAGACATACATTTTTTTCCCTTATATAAAAAACAAATGATATTTTGATATTCATTTTCTAATGTGACAAGAAATGTGATGTATAATTGATGTCCATTTTCAACTGGAACCTTCCATAAAAAATTGTCAACGGGAACCTTTTGGTTTTCAAATCCTTGTTTATAGAGGCATATGTAAATGTAATTTTTTTTTCTCTATTGTTTCCAGTGGTTTCATTTTCTGCTGCACTGGGTTTCCTGATTTATGGTGGGAGGTAATATCTGTTTATGAGGAGCTGTGGTTACTTATGTTCTACACTAATAACTTTGCTCTTAACAGGCTATTTGTCATGCTGAGACGCTTCCCTATTGAATCTAGAGGGCGCCAAAAAAAGTTGTATGAGGTTGGTTTAGTAATGCGTTCTTTTATGGACTATGCCTGGAAAACATAAGAAATACTGTATAACTAGAATTGTTTGAAGCAATGGAGTTTAAGAAACCTAAATATCTGAAAAGGATACATCATTTTTCAATTTTGTCTCCAATGTTCCAACAGAACTATTTCATACCCATATATTTAGAAAAATTTATCCCTATTATAAGGGTTACATGACATTTCAAAAAATATCTTTTTACATGTGCTAGAAATATCCCCTACACCCTACTGAAATGAAGGTATTGTATCCAATTAGAAAAATGACCCCAGGAAGGAATGAACACAAGACATTCAAATGCTACACCACTACACCGCTATTCCATTATTAAATTTCAATAAGAACTTATTGAAAAATTTTGAAAGATCGGAATGAAATTAAACTCTTAAAATATTAAGGATGAAATTTAAGAATGGTGTATATTTTAGAGATACATGATAGATTTAGCCTTTTAAAGGATGCAGATTTTCCGAAGCTGTGGTTGATTTCTTATTTTTCCTTATCCTTGCAGGTTGGTTGTGTGACAGCAATTTGTTTTAGCTGTTTCTTTATAAGATGTTTTGTGGTAAGACGTTTTGATTTCCTTATGATTTCTGTAATCTTCATACCCATTCCTTAAGCAATTAATACATACATATATTTCTTCATCTTGTAGCTTGCCCTCTCGGCATTTAACAAGGATGCTGATCTTGATGTCCTAGATCATCCCATGCTCAACTTGATATACTACATGGCAAGTTTTCTAATTCCTAGTCTATATTATAATATTTTTTTCAAAGATGAATGGATTATTCTTTTAGTTAGTATTGCAAGTAAACAACTGAGGACGTTAAAAAATATTCTATTTGTTGGGATTATTTAAAGGGATTTACAGGTCTATTGTCTAACCCTTTTTTTTTTAACTTATAAAACAAATATTCATATTATCAATGGATACATTAAATTTAATTTCACATGCTTCTACATAGGAATAAAGATCCACAAGAAAACTTTACAAATTTATTTGGGGGTCATTGATGCTTCTGTGAATGAGACATCAAGTAGAGTGAAGGATTTTAGGCCTAGAAGAATGGTCACAAGCTTGTATAAGATAATCGCGAAGACTTTGGTTGATAAATTGATAAAGGTCTTCTTAGCATGATTTTTGATTCTTAAGGGGCCTTCATTGTGGGGGGGTAGATTTGGATCAAGTTTTTATTGCTGATGAGGATATTTAGGATCATAGAATTTGTAACAAAGGTGTTATTGTAAGCGGGATGTTAGCTAAGATCAAGAAGGGAGTTGCGATGGTGAGTATGACTTACAGAAGTCTAGGAAAAATTTATATATATATTTCTTAAATGTGTTATCAGAAGGCATTTATGTTCACTTGGGAGAAATTTATGAAGCATATGTAAGAGACTCCTTTATTGGGATAAGCTGAATTTATTTATTTATTGTTTTATATAATTTCTGATGAATTTGATGTGCATTCTACTGCAGTTGGTAGAGATTGTTCCGTCGGCATTGGTTCTGTTTATACTGAGAAAACTTCCTCCGAGGCGTGTATCTGATCGGTATCACCCCATTGAATGA ATGGCGAAGGCGTTTTTAAGGCCGACGAGCTTTGCGGTTGAAGGGGGATTTGAATGGTGGAATGAGATCGACGAATCGGAGCAATGGCAGAATGGGATTTACTACTTCTTGGCTGCCTCTTATGGCATCATTTCCCTCATTGCCTTAGTTCAACTTATCCGAATTCAAATAAGAGTACCAGAATATGGGTGGACAACACAAAAGGCGTTCCATTTGATGAATTTCATTGTAAATGGATTGAGGGCTATTCTCTTTGGGCTTTATAAGAGTGTTTTCCTCATTCGGCCAAAGGCTCTTGAAATGGTGGTTATGGAGATTCCTGGACTTCTATTTTTTTCAACATACACTCTGCTTGTTCTATTTTGGGCTGAGATATACCATCAGGCACGGAGTCTTCCTATTGATAAACTTAAGCCCACTTACTGTATCATCAATGGAGTTGTGTATCTTACACAGATCTGCATTTGGATATTTGTGATGTTAAGCCGAACACATGGTGCAGTTATAGCTGCTAAGCTCTTCTTTTCAGTGGTTTCATTTTCTGCTGCACTGGGTTTCCTGATTTATGGTGGGAGGCTATTTGTCATGCTGAGACGCTTCCCTATTGAATCTAGAGGGCGCCAAAAAAAGTTGTATGAGGTTGGTTGTGTGACAGCAATTTGTTTTAGCTGTTTCTTTATAAGATGTTTTGTGGATCATAGAATTTGTAACAAAGGTGTTATTGTAAGCGGGATGTTAGCTAAGATCAAGAAGGGAGTTGCGATGTTGGTAGAGATTGTTCCGTCGGCATTGGTTCTGTTTATACTGAGAAAACTTCCTCCGAGGCGTGTATCTGATCGGTATCACCCCATTGAATGA ATGGCGAAGGCGTTTTTAAGGCCGACGAGCTTTGCGGTTGAAGGGGGATTTGAATGGTGGAATGAGATCGACGAATCGGAGCAATGGCAGAATGGGATTTACTACTTCTTGGCTGCCTCTTATGGCATCATTTCCCTCATTGCCTTAGTTCAACTTATCCGAATTCAAATAAGAGTACCAGAATATGGGTGGACAACACAAAAGGCGTTCCATTTGATGAATTTCATTGTAAATGGATTGAGGGCTATTCTCTTTGGGCTTTATAAGAGTGTTTTCCTCATTCGGCCAAAGGCTCTTGAAATGGTGGTTATGGAGATTCCTGGACTTCTATTTTTTTCAACATACACTCTGCTTGTTCTATTTTGGGCTGAGATATACCATCAGGCACGGAGTCTTCCTATTGATAAACTTAAGCCCACTTACTGTATCATCAATGGAGTTGTGTATCTTACACAGATCTGCATTTGGATATTTGTGATGTTAAGCCGAACACATGGTGCAGTTATAGCTGCTAAGCTCTTCTTTTCAGTGGTTTCATTTTCTGCTGCACTGGGTTTCCTGATTTATGGTGGGAGGCTATTTGTCATGCTGAGACGCTTCCCTATTGAATCTAGAGGGCGCCAAAAAAAGTTGTATGAGGTTGGTTGTGTGACAGCAATTTGTTTTAGCTGTTTCTTTATAAGATGTTTTGTGGATCATAGAATTTGTAACAAAGGTGTTATTGTAAGCGGGATGTTAGCTAAGATCAAGAAGGGAGTTGCGATGTTGGTAGAGATTGTTCCGTCGGCATTGGTTCTGTTTATACTGAGAAAACTTCCTCCGAGGCGTGTATCTGATCGGTATCACCCCATTGAATGA MAKAFLRPTSFAVEGGFEWWNEIDESEQWQNGIYYFLAASYGIISLIALVQLIRIQIRVPEYGWTTQKAFHLMNFIVNGLRAILFGLYKSVFLIRPKALEMVVMEIPGLLFFSTYTLLVLFWAEIYHQARSLPIDKLKPTYCIINGVVYLTQICIWIFVMLSRTHGAVIAAKLFFSVVSFSAALGFLIYGGRLFVMLRRFPIESRGRQKKLYEVGCVTAICFSCFFIRCFVDHRICNKGVIVSGMLAKIKKGVAMLVEIVPSALVLFILRKLPPRRVSDRYHPIE Homology
BLAST of MC00g_new0673.1 vs. ExPASy Swiss-Prot
Match: Q402F4 (Tobamovirus multiplication protein 1 OS=Nicotiana tabacum OX=4097 GN=TOM1 PE=1 SV=1) HSP 1 Score: 337.0 bits (863), Expect = 2.0e-91 Identity = 167/276 (60.51%), Postives = 210/276 (76.09%), Query Frame = 0
BLAST of MC00g_new0673.1 vs. ExPASy Swiss-Prot
Match: Q9FEG2 (Tobamovirus multiplication protein 1 OS=Arabidopsis thaliana OX=3702 GN=TOM1 PE=1 SV=1) HSP 1 Score: 332.0 bits (850), Expect = 6.5e-90 Identity = 168/277 (60.65%), Postives = 209/277 (75.45%), Query Frame = 0
BLAST of MC00g_new0673.1 vs. ExPASy Swiss-Prot
Match: Q402F3 (Tobamovirus multiplication protein 3 OS=Nicotiana tabacum OX=4097 GN=TOM3 PE=1 SV=1) HSP 1 Score: 290.0 bits (741), Expect = 2.8e-77 Identity = 144/268 (53.73%), Postives = 198/268 (73.88%), Query Frame = 0
BLAST of MC00g_new0673.1 vs. ExPASy Swiss-Prot
Match: Q9ZUM2 (Tobamovirus multiplication protein 3 OS=Arabidopsis thaliana OX=3702 GN=TOM3 PE=1 SV=2) HSP 1 Score: 287.7 bits (735), Expect = 1.4e-76 Identity = 142/271 (52.40%), Postives = 200/271 (73.80%), Query Frame = 0
BLAST of MC00g_new0673.1 vs. ExPASy Swiss-Prot
Match: Q948R8 (Protein TOM THREE HOMOLOG 1 OS=Arabidopsis thaliana OX=3702 GN=THH1 PE=2 SV=1) HSP 1 Score: 286.6 bits (732), Expect = 3.1e-76 Identity = 144/281 (51.25%), Postives = 205/281 (72.95%), Query Frame = 0
BLAST of MC00g_new0673.1 vs. NCBI nr
Match: XP_022141918.1 (tobamovirus multiplication protein 1-like isoform X1 [Momordica charantia]) HSP 1 Score: 505 bits (1300), Expect = 3.25e-179 Identity = 266/290 (91.72%), Postives = 270/290 (93.10%), Query Frame = 0
BLAST of MC00g_new0673.1 vs. NCBI nr
Match: XP_038888866.1 (tobamovirus multiplication protein 1-like isoform X1 [Benincasa hispida]) HSP 1 Score: 435 bits (1119), Expect = 1.12e-151 Identity = 232/300 (77.33%), Postives = 245/300 (81.67%), Query Frame = 0
BLAST of MC00g_new0673.1 vs. NCBI nr
Match: XP_022988878.1 (tobamovirus multiplication protein 1-like [Cucurbita maxima] >XP_022988879.1 tobamovirus multiplication protein 1-like [Cucurbita maxima]) HSP 1 Score: 434 bits (1116), Expect = 3.10e-151 Identity = 224/286 (78.32%), Postives = 242/286 (84.62%), Query Frame = 0
BLAST of MC00g_new0673.1 vs. NCBI nr
Match: XP_023530045.1 (tobamovirus multiplication protein 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 433 bits (1114), Expect = 6.24e-151 Identity = 225/286 (78.67%), Postives = 241/286 (84.27%), Query Frame = 0
BLAST of MC00g_new0673.1 vs. NCBI nr
Match: XP_022927927.1 (tobamovirus multiplication protein 1-like isoform X1 [Cucurbita moschata] >XP_022927928.1 tobamovirus multiplication protein 1-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 432 bits (1111), Expect = 1.79e-150 Identity = 223/286 (77.97%), Postives = 242/286 (84.62%), Query Frame = 0
BLAST of MC00g_new0673.1 vs. ExPASy TrEMBL
Match: A0A6J1CLY0 (tobamovirus multiplication protein 1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012173 PE=3 SV=1) HSP 1 Score: 505 bits (1300), Expect = 1.57e-179 Identity = 266/290 (91.72%), Postives = 270/290 (93.10%), Query Frame = 0
BLAST of MC00g_new0673.1 vs. ExPASy TrEMBL
Match: A0A6J1JNL1 (tobamovirus multiplication protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111486099 PE=3 SV=1) HSP 1 Score: 434 bits (1116), Expect = 1.50e-151 Identity = 224/286 (78.32%), Postives = 242/286 (84.62%), Query Frame = 0
BLAST of MC00g_new0673.1 vs. ExPASy TrEMBL
Match: A0A6J1EME9 (tobamovirus multiplication protein 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111434684 PE=3 SV=1) HSP 1 Score: 432 bits (1111), Expect = 8.65e-151 Identity = 223/286 (77.97%), Postives = 242/286 (84.62%), Query Frame = 0
BLAST of MC00g_new0673.1 vs. ExPASy TrEMBL
Match: A0A1S3C0C4 (tobamovirus multiplication protein 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495421 PE=3 SV=1) HSP 1 Score: 428 bits (1100), Expect = 4.24e-149 Identity = 230/300 (76.67%), Postives = 242/300 (80.67%), Query Frame = 0
BLAST of MC00g_new0673.1 vs. ExPASy TrEMBL
Match: A0A0A0K5Z8 (DUF1084 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G062880 PE=3 SV=1) HSP 1 Score: 425 bits (1092), Expect = 6.99e-148 Identity = 226/300 (75.33%), Postives = 242/300 (80.67%), Query Frame = 0
BLAST of MC00g_new0673.1 vs. TAIR 10
Match: AT4G21790.1 (tobamovirus multiplication 1 ) HSP 1 Score: 332.0 bits (850), Expect = 4.6e-91 Identity = 168/277 (60.65%), Postives = 209/277 (75.45%), Query Frame = 0
BLAST of MC00g_new0673.1 vs. TAIR 10
Match: AT2G02180.1 (tobamovirus multiplication protein 3 ) HSP 1 Score: 287.7 bits (735), Expect = 1.0e-77 Identity = 142/271 (52.40%), Postives = 200/271 (73.80%), Query Frame = 0
BLAST of MC00g_new0673.1 vs. TAIR 10
Match: AT1G14530.1 (Protein of unknown function (DUF1084) ) HSP 1 Score: 286.6 bits (732), Expect = 2.2e-77 Identity = 144/281 (51.25%), Postives = 205/281 (72.95%), Query Frame = 0
BLAST of MC00g_new0673.1 vs. TAIR 10
Match: AT1G14530.2 (Protein of unknown function (DUF1084) ) HSP 1 Score: 286.6 bits (732), Expect = 2.2e-77 Identity = 144/281 (51.25%), Postives = 205/281 (72.95%), Query Frame = 0
BLAST of MC00g_new0673.1 vs. TAIR 10
Match: AT3G59090.1 (CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: tobamovirus multiplication 1 (TAIR:AT4G21790.1); Has 196 Blast hits to 195 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 188; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). ) HSP 1 Score: 53.1 bits (126), Expect = 4.1e-07 Identity = 73/293 (24.91%), Postives = 113/293 (38.57%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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