MC00g_new0621.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC00g_new0621.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	scaffold33: 112927 .. 113830 (-)
Sequence length	501
RNA-Seq Expression	MC00g_new0621.1
Synteny	MC00g_new0621.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTTGATGTTGGGCAAGCGGGTGTACGTGAGGTCGTAGAGGATCCTGCTGGGGTCAAGGCGATGATGCTCAACCGCAGTCACGTGTATGTGAGGGCCCACAGGAGCCTAATGTGGGCCAAGGTGATGCTGTTGGACCATCAGCTGTGCGTGAGGGACGAGGCATCGGTACGAACATTGTCGATTCTAAAGGTCAGAATAACGCTCGCACATCTAGCATGCGCTTGAGGAAGGTTGAGAAACACTTGAAGAACATAGACAAGCGTATTGGCGAGCGTATGTCTGGCATGGAGGCTGAATTGAAAGCAATCAAGAAGTATTTGAGGCGACTTGCTAAGGTACGAATATTTGTACAATGGTCATTTGTTATGGCTTATACTTTTGGTTTTTTTTTCTACTTGTTATTAACGTGTCGCTGAATATGTAGACTTACATGTTGACGAGGATGACATGAGGAGAAGAAAAGGTACCGACTCGGGCGGTGGTGCTGGCCCGAGAGATGGTGATGAGCTGGGAGATGGTACAGATCCAAGGGATCGTGGTGAGCCGAGGGATGGTGGTGGATCGGGAGAGAGCACCGAGGCGGATACCGGTATTGAGCTGGGAGATACTATCGAGCAGGATGCCGGTGCTGGGTCGGTTGATTGTACCGCGCCTAATGTTGGTATTGCAGATGGGTCGGGAGATGTGGGCGCCGGCGGTGATGACACGGTGGTCGATACTGTAAAGGTACGTACTATATACGTCGCGAGTTTGGACATTCAACTAAGTTTTATTGAACTCACGTGGTTTGTTAATGTAAAAACATGATGAAGCAGTCAAAGAACTTCCCCCGACTCACGATCGGGTCATTCTCGGACTCGACTTGGGGGGACATCCTACACCGAAGCGTTTGGTATGA

mRNA sequence

ATGGATGTTGATGTTGGGCAAGCGGGTGTACGTGAGGTCGTAGAGGATCCTGCTGGGGTCAAGGCGATGATGCTCAACCGCAGTCACGTGTATGTGAGGGCCCACAGGAGCCTAATGTGGGCCAAGGTGATGCTGTTGGACCATCAGCTGTGCGTGAGGGACGAGGCATCGGTACGAACATTGTCGATTCTAAAGCTGGGAGATGGTACAGATCCAAGGGATCGTGGTGAGCCGAGGGATGGTGGTGGATCGGGAGAGAGCACCGAGGCGGATACCGGTATTGAGCTGGGAGATACTATCGAGCAGGATGCCGGTGCTGGGTCGGTTGATTGTACCGCGCCTAATGTTGGTATTGCAGATGGGTCGGGAGATGTGGGCGCCGGCGGTGATGACACGGTGGTCGATACTGTAAAGGTACTCAAAGAACTTCCCCCGACTCACGATCGGGTCATTCTCGGACTCGACTTGGGGGGACATCCTACACCGAAGCGTTTGGTATGA

Coding sequence (CDS)

ATGGATGTTGATGTTGGGCAAGCGGGTGTACGTGAGGTCGTAGAGGATCCTGCTGGGGTCAAGGCGATGATGCTCAACCGCAGTCACGTGTATGTGAGGGCCCACAGGAGCCTAATGTGGGCCAAGGTGATGCTGTTGGACCATCAGCTGTGCGTGAGGGACGAGGCATCGGTACGAACATTGTCGATTCTAAAGCTGGGAGATGGTACAGATCCAAGGGATCGTGGTGAGCCGAGGGATGGTGGTGGATCGGGAGAGAGCACCGAGGCGGATACCGGTATTGAGCTGGGAGATACTATCGAGCAGGATGCCGGTGCTGGGTCGGTTGATTGTACCGCGCCTAATGTTGGTATTGCAGATGGGTCGGGAGATGTGGGCGCCGGCGGTGATGACACGGTGGTCGATACTGTAAAGGTACTCAAAGAACTTCCCCCGACTCACGATCGGGTCATTCTCGGACTCGACTTGGGGGGACATCCTACACCGAAGCGTTTGGTATGA

Protein sequence

MDVDVGQAGVREVVEDPAGVKAMMLNRSHVYVRAHRSLMWAKVMLLDHQLCVRDEASVRTLSILKLGDGTDPRDRGEPRDGGGSGESTEADTGIELGDTIEQDAGAGSVDCTAPNVGIADGSGDVGAGGDDTVVDTVKVLKELPPTHDRVILGLDLGGHPTPKRLV

Homology

The following BLAST results are available for this feature:

BLAST of MC00g_new0621.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC00g_new0621.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC00g_new0621.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC00g_new0621.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..84

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC00g_new0621	MC00g_new0621	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC00g_new0621.1-cds	MC00g_new0621.1-cds-scaffold33:112927..113009	CDS
MC00g_new0621.1-cds	MC00g_new0621.1-cds-scaffold33:113095..113317	CDS
MC00g_new0621.1-cds	MC00g_new0621.1-cds-scaffold33:113636..113830	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC00g_new0621.1	MC00g_new0621.1-protein	polypeptide