MC00g0172.1 (mRNA) Bitter gourd (Dali-11) v1

Overview


Name	MC00g0172.1
Type	mRNA
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	scaffold18: 166798 .. 167043 (-)
Sequence length	246
RNA-Seq Expression	MC00g0172.1
Synteny	MC00g0172.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TACACGAAAGGGATGGGGTACGGTCCAAAGCCACCAAGTCAGAAACAGGCAGGAGGATACTCCCAGGAATATGTTCATGCTTTGGAGGCTAGACTGGCAAAAGATGAAGAGTTATTGCAAACTCAACGCCAGGAAACCCAGAGGTTGTTTGAAATGCAACGTCAAGAGTATGAAAGAAGGTTTGACAGTATGGAAGAACTTTTTCGAAGATTTACTGAAGGAGGAGGAAGTTCATCGTTGAACAAG

mRNA sequence

TACACGAAAGGGATGGGGTACGGTCCAAAGCCACCAAGTCAGAAACAGGCAGGAGGATACTCCCAGGAATATGTTCATGCTTTGGAGGCTAGACTGGCAAAAGATGAAGAGTTATTGCAAACTCAACGCCAGGAAACCCAGAGGTTGTTTGAAATGCAACGTCAAGAGTATGAAAGAAGGTTTGACAGTATGGAAGAACTTTTTCGAAGATTTACTGAAGGAGGAGGAAGTTCATCGTTGAACAAG

Coding sequence (CDS)

TACACGAAAGGGATGGGGTACGGTCCAAAGCCACCAAGTCAGAAACAGGCAGGAGGATACTCCCAGGAATATGTTCATGCTTTGGAGGCTAGACTGGCAAAAGATGAAGAGTTATTGCAAACTCAACGCCAGGAAACCCAGAGGTTGTTTGAAATGCAACGTCAAGAGTATGAAAGAAGGTTTGACAGTATGGAAGAACTTTTTCGAAGATTTACTGAAGGAGGAGGAAGTTCATCGTTGAACAAG

Protein sequence

YTKGMGYGPKPPSQKQAGGYSQEYVHALEARLAKDEELLQTQRQETQRLFEMQRQEYERRFDSMEELFRRFTEGGGSSSLNK

Homology

[Close]

BLAST of MC00g0172.1 vs. NCBI nr
Match: XP_022143616.1 (uncharacterized protein LOC111013476 [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 1.04e-09
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 1   YTKGMGYGPKPPSQKQAGG-YSQEYVHALEARLAK-DEELLQTQRQETQRLFEMQRQEYE 60
           Y  GMGYGPKP   K +   YS EYV +LEARL K +EE+ +T +++ Q+  E Q QE+ 
Sbjct: 137 YVIGMGYGPKPTRNKGSSSKYSDEYVESLEARLQKHEEEMARTTQEQIQKALEAQSQEFN 196

Query: 61  RRFDSMEELFRRFTEGGGSSSLNK 82
           R+   M+++F     GGGSSS +K
Sbjct: 197 RKLLEMQQMF---LSGGGSSSTSK 217

[Close]

BLAST of MC00g0172.1 vs. NCBI nr
Match: XP_022148911.1 (uncharacterized protein LOC111017461 [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 1.56e-09
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 1   YTKGMGYGPKPPSQKQAGG-YSQEYVHALEARLAK-DEELLQTQRQETQRLFEMQRQEYE 60
           Y  GMGYGPKP   K +   YS EYV +LEARL K +EE+ +T +++ Q+  E Q QE+ 
Sbjct: 142 YVIGMGYGPKPTRNKGSSSKYSDEYVESLEARLQKHEEEMARTTQEQIQKALEAQSQEFN 201

Query: 61  RRFDSMEELFRRFTEGGGSSSLNK 82
           R+   M+++F     GGGSSS +K
Sbjct: 202 RKLLEMQQMF---LSGGGSSSTSK 222

[Close]

BLAST of MC00g0172.1 vs. ExPASy TrEMBL
Match: A0A6J1CQT5 (uncharacterized protein LOC111013476 OS=Momordica charantia OX=3673 GN=LOC111013476 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.01e-10
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 1   YTKGMGYGPKPPSQKQAGG-YSQEYVHALEARLAK-DEELLQTQRQETQRLFEMQRQEYE 60
           Y  GMGYGPKP   K +   YS EYV +LEARL K +EE+ +T +++ Q+  E Q QE+ 
Sbjct: 137 YVIGMGYGPKPTRNKGSSSKYSDEYVESLEARLQKHEEEMARTTQEQIQKALEAQSQEFN 196

Query: 61  RRFDSMEELFRRFTEGGGSSSLNK 82
           R+   M+++F     GGGSSS +K
Sbjct: 197 RKLLEMQQMF---LSGGGSSSTSK 217

[Close]

BLAST of MC00g0172.1 vs. ExPASy TrEMBL
Match: A0A6J1D6S9 (uncharacterized protein LOC111017461 OS=Momordica charantia OX=3673 GN=LOC111017461 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 7.56e-10
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 1   YTKGMGYGPKPPSQKQAGG-YSQEYVHALEARLAK-DEELLQTQRQETQRLFEMQRQEYE 60
           Y  GMGYGPKP   K +   YS EYV +LEARL K +EE+ +T +++ Q+  E Q QE+ 
Sbjct: 142 YVIGMGYGPKPTRNKGSSSKYSDEYVESLEARLQKHEEEMARTTQEQIQKALEAQSQEFN 201

Query: 61  RRFDSMEELFRRFTEGGGSSSLNK 82
           R+   M+++F     GGGSSS +K
Sbjct: 202 RKLLEMQQMF---LSGGGSSSTSK 222

The following BLAST results are available for this feature:

BLAST of MC00g0172.1 vs.


Match Name	E-value	Identity	Description

BLAST of MC00g0172.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143616.1	1.04e-09	46.43	uncharacterized protein LOC111013476 [Momordica charantia]	[more]
XP_022148911.1	1.56e-09	46.43	uncharacterized protein LOC111017461 [Momordica charantia]	[more]

BLAST of MC00g0172.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQT5	5.01e-10	46.43	uncharacterized protein LOC111013476 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1D6S9	7.56e-10	46.43	uncharacterized protein LOC111017461 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]

BLAST of MC00g0172.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 25..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MC00g0172	MC00g0172	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MC00g0172.1-cds	MC00g0172.1-cds-scaffold18:166798..167043	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MC00g0172.1	MC00g0172.1-protein	polypeptide