LsiUNG000180.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	LsiUNG000180.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	GTPase
Location	chr00: 311974 .. 315772 (-)
Sequence length	1005
RNA-Seq Expression	LsiUNG000180.1
Synteny	LsiUNG000180.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTGCTTACATTTCTTAAACCGAAGACGAAGAAGAAGATGAAGAAGCAAAAGAAGAAAAGCAAAGCGAGTGAAAATGGTGTTATGGGAGATTGCATTGGCAACAGCCTATTTCTTGGGCCTCAAGCGAACCTTTAAGCTCGCTCTCAAGACTCAGCGACGTCTTGTTTCCCCCAAATACCCTCGAATTCGTCAATTTCTTCGCGGGTATTTTTCCATTATTCCTCTTCTTCATCGTATTTTCTTAAATCTTAAACGCTATTTGCTGTATCTGCTTAAACATAATCTTATGGAAATGGTTGCTAAACTTATTGTTCTTCAGATGTTTGTTTATAGTTGCTGGTTTGAGGCCTTTACATTTGCTTGATTGCATTTTGGTGGAATAGTTGATGGACTTATTTATTGGGTTTTATGGTAGATATACATGGTTTGAGATGTGGAATTCTTCATTTTCTCGGTAGAGTCTAGAGTGTAGGCAATAGTTTAGGATGATTAAGTTGGTGAAGTTTCAAACCTATGGTGGCACCTACCTAGTAATTAATTTTTTAGAAGTTTCTTTGGCACCCAAATGTTATAGGGTCAGGTAGGTTGTCCCGTGAGATTAGTCAAAATGCGTAAGCTGGCCCGAACACTTACTGATATAAAAAAAAAGGTTGGTGAAGTTTCAACCTCATAACTGTTCATATCTGAAGTATAATGTTTGGAACATGTGGTCAATGGTTGAAGCTTATGAACTTCTATTTCATGGAAAAGAAAGTGAGTAGGACTCTGCAATACTCATGGCCTGTGTAATAGGCAATAGGCAATAGGCCTGTGAATTGTGATTAGGTAGTGGTCTTCTTTTTCTTTTGATATATGGGGTGTTGAAGGTCCCACCCCTTGCATTATACTCATGACCCACCTCCAATAAGCTTTGGGGGGGGAGGGGGGGGTTTGCCCGTCCCTACCCTCCAGGAGGCTCTACATATTTTAAGTTATTAAGGGATTGTTTGGGGAGTTGAATGGGTTATTATAGTTAATGGCTATTATATTATGTGAGTTATAATAGTTTGTGTTTGGAGTGCAAACTATTTTAGTCTGAGTTACATATTCAGAGAGAGGATGGTTACAAAATAGTAAACATTGTAGACAATGTGGGTTTTCAAATAGTTTTAGTGAGTTATAATAATTGGGAACTTCAACTATTATATTGGAAAGCCCAAACATTGAGTGGGCTATAATAGTCCACTCCACCCAAGGCAAATCGGGGGCGTTTAAGTTTCCAAAATTAAGGGAGATTCTCAAATTTCAGAGGCATCTCCAAACATGTTGAGTCCTTGCCACCAGGCCACATTTTGGGGTTGGTAGTGGTCTTCTTTTCCTTCATAGTTTTATAACGATAATTTTTTTTTTTTTTTTTTAATTTAAAAGTAAAACAATGTCTAGAAGACTAGAATATGGAACAAATTGCTGCAATCAATCAAATTCTCCGATATTGGGTGATGCAATGCCCAGCATTTCGCTTATACCGATAATTTTTCTTGTCCTTACATAGGTCTGCTACATAACAATTTCTATTTTTATTACTCAGTTGTGTTTTCACAGTTACCCTTTTTGCCACTTAACTAGCTATCAGATGTAGAGAAATGCTTATGGCATGCCACTTTCAATCGGATGAAGATTGCTCTTACATATCGTTGGCTAGATGTTAATCAGTGGCTACCATCTTAAAGGTTTCACAAGATCTTTGACTTCATGAACATTTTATATTTTCCTTCTACGTTTTTATGGTGATATCATTGATATGGCATGATTTCTTTGTAGTATGATCTATTTCTTATGTTATAACATAAAAGCAAGGACAAGTATAATGTATAGTGTATACTGTATAGTATACAGTGTTCTCAAAGGTTTCCGGGTTTGTTATCAACTTATTATTTATTCTTCAAAATACAATATCCCACATTATCCTTGTAATAATACCGTGATTAAGGGTAATTTAAGCCTTTACTACCTTTACCTCCATGGCTTATGACAAACAAAAATTAGCAAGTGGGTCAACCAACTCAACCCTTTAAGTGTTGAGAATTTTCATTGAAGAACGTGGCAATTGAAGGATGTTATTTTTGTTATTTCTTTTCAATATCTCCTCAAGGCTGATGTCTTGTTTCTTGTAGAAAAAACCCTTGAGGCTCGGCCTAGAAGCTACCTTTTAAAACATTGATTATACACAGTAGCGTAGCAGTGAATTACTGAATTTTAATTGGCAGGGCTGTTCATCTGTCAGCTCCTCTGTTTCTTGTTCCTCCTTTTTTTTTTCTATTGCAAGTATGGAGAGTGAAAATATCAATATTTATCCTTCTTTTGGCTCCCTTTGAAATTATCCTGTTTTCAGATGAAAATTCCATGTCAACCTAGGGTGTCATTAATAATATGATATTCTCACTTCTTGATCAAGTTGTATGGTAGAACCTTATTTATGTAAAATTATAAAATATGCAATTAGTTCGATCAGCTTCGAGGGCCTAAGTTGTTTCTAGATCCATATGGTAATGACTTTGTTATGAAATCGACAATAAAAGAAAACAGAAAACGTAAACAGTAGAGAAATCGACATAGAGATTTACGTGGTTCACTAACAGCGTGTTAGTTACGTCAACAGGCTATTTATAGCACACTCCTCTAAATCCTAGGGTCAAAATCGTAAATAATATAAATATGAATATAATTTAGATTTCAAATAACAGATTGAGGCATTCCAACCGGCTTCATATCCTACCATCTGCTTCTTTATTTGATTCTTGTCAAGCCTAACCCTGAAAATTCACAGAGAATGCCCAAAAGCTTGTAGTATTGGTTTTGCCAATTCTGATCTAAGAGAGGACATTGGATTTTACTGGCTTCTCCATAAAGTCACCATAATTCCACAAGAACTTTAGGACTACCAGTACTATATCTTTTCTGCTAGTCTGAATTAGTCGTTATTCTTTAACTGCTCCAAAGCACTTTTTCCTTACTGCAGACGGACCCGTGCCGTGTTTGATGTTACTGTGAAAGTTCATCAGACCATTCAGCGTCAAGACATAAAAGTTAGTACAAATCTTGGTAGCTGGATTTCGCGATGGCTTACTCGAACGAAACCATCTGCTGAGACTCATGAACATCCCAATGGCACTATCAACCCAGGCATGAAAATGATAAAGAAGGTTTCCAACTCCTACTTGAAACATCAAGCCAGCAGTCGAGCAGTGATTGGTCAAAAATTCGATCAATATCTGTCATCTACTTCATCAGTACACAGATGGCCTAAGCCCTTCTTCCCTACCATTGCAATGATCATGAGGCAGAGAAAGCCTGTTGGGACTTTGAATCAACACAGACAATTTAGCATTTGTGGCTCTGATGGATTGAAAACAAACTACAGAAGACGAAGTTTCGATGACGATATTCGAGAAGATATCAGGCAGTGGATGCTCCAAAATTAGAAGAGAAGATTCTTTTCTAGCTGTCTTCTCCTTGGAGACTAGATTATTTGGCTTACAATACAGTCTATAGTGTAGTGTTTAGTTTCCAATTTTGAGCTTGGAGACAATAGAGAGCTTTTCTTTTCTTGTTTTAAAATGTTTGGAACATGTTATTGGAAGCCATGTCTTTGCTTATGAATAATTTCTAAAGGTAATGTTAATTTTCAAATACTTACGTTTTAGGTAGTTAACAATGCATATCTGCTGGAAGTTATGTATCAATACCGATGAAATTGCTGAGGTCTCAATTTTATGGAAACGACTATGGAAATATCAATAAGTTTTATTATTTATATG

mRNA sequence

TTTTGCTTACATTTCTTAAACCGAAGACGAAGAAGAAGATGAAGAAGCAAAAGAAGAAAAGCAAAGCGAGTGAAAATGGTGTTATGGGAGATTGCATTGGCAACAGCCTATTTCTTGGGCCTCAAGCGAACCTTTAAGCTCGCTCTCAAGACTCAGCGACGTCTTGTTTCCCCCAAATACCCTCGAATTCGTCAATTTCTTCGCGGACGGACCCGTGCCGTGTTTGATGTTACTGTGAAAGTTCATCAGACCATTCAGCGTCAAGACATAAAAGTTAGTACAAATCTTGGTAGCTGGATTTCGCGATGGCTTACTCGAACGAAACCATCTGCTGAGACTCATGAACATCCCAATGGCACTATCAACCCAGGCATGAAAATGATAAAGAAGGTTTCCAACTCCTACTTGAAACATCAAGCCAGCAGTCGAGCAGTGATTGGTCAAAAATTCGATCAATATCTGTCATCTACTTCATCAGTACACAGATGGCCTAAGCCCTTCTTCCCTACCATTGCAATGATCATGAGGCAGAGAAAGCCTGTTGGGACTTTGAATCAACACAGACAATTTAGCATTTGTGGCTCTGATGGATTGAAAACAAACTACAGAAGACGAAGTTTCGATGACGATATTCGAGAAGATATCAGGCAGTGGATGCTCCAAAATTAGAAGAGAAGATTCTTTTCTAGCTGTCTTCTCCTTGGAGACTAGATTATTTGGCTTACAATACAGTCTATAGTGTAGTGTTTAGTTTCCAATTTTGAGCTTGGAGACAATAGAGAGCTTTTCTTTTCTTGTTTTAAAATGTTTGGAACATGTTATTGGAAGCCATGTCTTTGCTTATGAATAATTTCTAAAGGTAATGTTAATTTTCAAATACTTACGTTTTAGGTAGTTAACAATGCATATCTGCTGGAAGTTATGTATCAATACCGATGAAATTGCTGAGGTCTCAATTTTATGGAAACGACTATGGAAATATCAATAAGTTTTATTATTTATATG

Coding sequence (CDS)

ATGGTGTTATGGGAGATTGCATTGGCAACAGCCTATTTCTTGGGCCTCAAGCGAACCTTTAAGCTCGCTCTCAAGACTCAGCGACGTCTTGTTTCCCCCAAATACCCTCGAATTCGTCAATTTCTTCGCGGACGGACCCGTGCCGTGTTTGATGTTACTGTGAAAGTTCATCAGACCATTCAGCGTCAAGACATAAAAGTTAGTACAAATCTTGGTAGCTGGATTTCGCGATGGCTTACTCGAACGAAACCATCTGCTGAGACTCATGAACATCCCAATGGCACTATCAACCCAGGCATGAAAATGATAAAGAAGGTTTCCAACTCCTACTTGAAACATCAAGCCAGCAGTCGAGCAGTGATTGGTCAAAAATTCGATCAATATCTGTCATCTACTTCATCAGTACACAGATGGCCTAAGCCCTTCTTCCCTACCATTGCAATGATCATGAGGCAGAGAAAGCCTGTTGGGACTTTGAATCAACACAGACAATTTAGCATTTGTGGCTCTGATGGATTGAAAACAAACTACAGAAGACGAAGTTTCGATGACGATATTCGAGAAGATATCAGGCAGTGGATGCTCCAAAATTAG

Protein sequence

MVLWEIALATAYFLGLKRTFKLALKTQRRLVSPKYPRIRQFLRGRTRAVFDVTVKVHQTIQRQDIKVSTNLGSWISRWLTRTKPSAETHEHPNGTINPGMKMIKKVSNSYLKHQASSRAVIGQKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKPVGTLNQHRQFSICGSDGLKTNYRRRSFDDDIREDIRQWMLQN

Homology

[Close]

BLAST of LsiUNG000180.1 vs. ExPASy TrEMBL
Match: A0A1S3CRP2 (uncharacterized protein LOC103503568 OS=Cucumis melo OX=3656 GN=LOC103503568 PE=4 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 1.1e-91
Identity = 172/197 (87.31%), Postives = 179/197 (90.86%), Query Frame = 0


Query: 1   MVLWEIALATAYFLGLKRTFKLALKTQRRLVSPKYPRIRQFLRGRTRAVFDVTVKVHQTI 60
           MVLWEIALAT YFLGLKRTFKL LKTQRRLVSP+YPRIRQFLRGRTRAVFDVTVKVHQTI
Sbjct: 1   MVLWEIALATTYFLGLKRTFKLVLKTQRRLVSPEYPRIRQFLRGRTRAVFDVTVKVHQTI 60

Query: 61  QRQDIKVSTNLGSWISRWLTRTKPSAETHEHPNGTINPGMKMIKKVSNSYLKHQASSRAV 120
           QRQDIK   NLGSWISRWL R+KPSAET EHPNGT+N GMKMIKKVSNSYLKH+AS+RAV
Sbjct: 61  QRQDIKFDRNLGSWISRWLNRSKPSAETQEHPNGTMNTGMKMIKKVSNSYLKHRASTRAV 120

Query: 121 IGQKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKPVGTLNQHRQFSICGSDGLKTNYRRR 180
           IGQKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKP G + QHRQFSI GS GLKTN RRR
Sbjct: 121 IGQKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKPAGIVIQHRQFSIRGSHGLKTNDRRR 180

Query: 181 SFDDDIREDIRQWMLQN 198
            FD  IREDI QWM+QN
Sbjct: 181 RFDHGIREDIMQWMVQN 197

[Close]

BLAST of LsiUNG000180.1 vs. ExPASy TrEMBL
Match: A0A0A0LH53 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G901040 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 7.2e-91
Identity = 169/197 (85.79%), Postives = 180/197 (91.37%), Query Frame = 0


Query: 1   MVLWEIALATAYFLGLKRTFKLALKTQRRLVSPKYPRIRQFLRGRTRAVFDVTVKVHQTI 60
           MVLWEIALAT YFLGLKR FKLALKTQRR+VSPKYPRIRQFLRGRTRAVFDVTVKVHQTI
Sbjct: 1   MVLWEIALATTYFLGLKRAFKLALKTQRRIVSPKYPRIRQFLRGRTRAVFDVTVKVHQTI 60

Query: 61  QRQDIKVSTNLGSWISRWLTRTKPSAETHEHPNGTINPGMKMIKKVSNSYLKHQASSRAV 120
           +RQDIKV+ NL SWISRWL R KPSAET EHP+G+IN GMKM+KKVSNSYLKH+AS+RAV
Sbjct: 61  KRQDIKVNRNLRSWISRWLNRRKPSAETQEHPSGSINTGMKMMKKVSNSYLKHRASTRAV 120

Query: 121 IGQKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKPVGTLNQHRQFSICGSDGLKTNYRRR 180
           IGQKFDQYL+STSSVHRWPKPFFPTIAMIMRQRKP G + QHRQFSICGS GLKTN RRR
Sbjct: 121 IGQKFDQYLASTSSVHRWPKPFFPTIAMIMRQRKPTGIVIQHRQFSICGSHGLKTNDRRR 180

Query: 181 SFDDDIREDIRQWMLQN 198
            FD  IREDI QWM+QN
Sbjct: 181 RFDHGIREDIMQWMVQN 197

[Close]

BLAST of LsiUNG000180.1 vs. ExPASy TrEMBL
Match: A0A6J1HFJ9 (uncharacterized protein LOC111463851 OS=Cucurbita moschata OX=3662 GN=LOC111463851 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 2.4e-78
Identity = 147/197 (74.62%), Postives = 171/197 (86.80%), Query Frame = 0


Query: 1   MVLWEIALATAYFLGLKRTFKLALKTQRRLVSPKYPRIRQFLRGRTRAVFDVTVKVHQTI 60
           MVLWEIALATAYFLGLKRTFKL LKTQRRLVSP +PRIR+FL  RTRA+FDVT+K H+TI
Sbjct: 1   MVLWEIALATAYFLGLKRTFKLVLKTQRRLVSPNHPRIRRFLHRRTRAIFDVTLKAHRTI 60

Query: 61  QRQDIKVSTNLGSWISRWLTRTKPSAETHEHPNGTINPGMKMIKKVSNSYLKHQASSRAV 120
           + +DIKV  N+ SWIS+WL RTKPSA  H+HP+GT N GMKMIK+VSNSY+KH+AS+RA 
Sbjct: 61  EHRDIKVGRNVSSWISQWLNRTKPSAGIHQHPSGT-NTGMKMIKQVSNSYMKHRASTRAA 120

Query: 121 IGQKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKPVGTLNQHRQFSICGSDGLKTNYRRR 180
           IGQK D+YLS TSSVH WPK  FPTIAMIMRQRKP GT+NQHRQFSIC S+G+KTNYRR 
Sbjct: 121 IGQKVDKYLSFTSSVHGWPKA-FPTIAMIMRQRKPAGTMNQHRQFSICSSEGMKTNYRRG 180

Query: 181 SFDDDIREDIRQWMLQN 198
            F+  IR+DI+QWM++N
Sbjct: 181 RFEHGIRDDIKQWMIRN 195

[Close]

BLAST of LsiUNG000180.1 vs. ExPASy TrEMBL
Match: A0A6J1HU73 (uncharacterized protein LOC111466890 OS=Cucurbita maxima OX=3661 GN=LOC111466890 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 7.7e-77
Identity = 145/196 (73.98%), Postives = 169/196 (86.22%), Query Frame = 0


Query: 1   MVLWEIALATAYFLGLKRTFKLALKTQRRLVSPKYPRIRQFLRGRTRAVFDVTVKVHQTI 60
           MVLWEIALATAYFLGLKRTFKL LKTQRRLVSP +PRIR+FL  RTRA+FDVT+K H+TI
Sbjct: 1   MVLWEIALATAYFLGLKRTFKLVLKTQRRLVSPNHPRIRRFLHRRTRAIFDVTLKAHRTI 60

Query: 61  QRQDIKVSTNLGSWISRWLTRTKPSAETHEHPNGTINPGMKMIKKVSNSYLKHQASSRAV 120
           Q +DIKV  ++ SWIS+WL R KPSA  H+HP+GT N GMKMIK+VSNSY+KH+AS+RA 
Sbjct: 61  QHRDIKVGMHVSSWISQWLNRMKPSAGIHQHPSGT-NTGMKMIKQVSNSYMKHRASTRAA 120

Query: 121 IGQKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKPVGTLNQHRQFSICGSDGLKTNYRRR 180
           IGQK D+YLS TSSVHRWPK  FPTIAMI RQRKP GT+NQHRQFSIC S+G+KTNYRR 
Sbjct: 121 IGQKVDKYLSFTSSVHRWPKA-FPTIAMITRQRKPAGTMNQHRQFSICSSEGMKTNYRRG 180

Query: 181 SFDDDIREDIRQWMLQ 197
            F+  IR+DI+QWM++
Sbjct: 181 RFEHGIRDDIKQWMIR 194

[Close]

BLAST of LsiUNG000180.1 vs. ExPASy TrEMBL
Match: A0A6J1DZV3 (uncharacterized protein LOC111025863 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111025863 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 1.2e-72
Identity = 143/197 (72.59%), Postives = 164/197 (83.25%), Query Frame = 0


Query: 1   MVLWEIALATAYFLGLKRTFKLALKTQRRLVSPKYPRIRQFLRGRTRAVFDVTVKVHQTI 60
           MVLWEI LATAYFLGLKRT+KLALK QRRLVSPK+PRIRQFLRGRTR++FDV VKVHQ +
Sbjct: 1   MVLWEITLATAYFLGLKRTYKLALKIQRRLVSPKHPRIRQFLRGRTRSIFDVAVKVHQNV 60

Query: 61  QRQDIKVSTNLGSWISRWLTRTKPSAETHEHPNGTINPGMKMIKKVSNSYLKHQASSRAV 120
           Q QDI+V  N G+ I +WL + KPSAE  EH +G I  GMKMIK+VSNSYLKH+AS RAV
Sbjct: 61  QHQDIEVGKNFGNRILQWLNQMKPSAEIREHQDGAIT-GMKMIKQVSNSYLKHRASPRAV 120

Query: 121 IGQKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKPVGTLNQHRQFSICGSDGLKTNYRRR 180
           I QKFDQY+S TSS+ RWPKP FPT AMIMRQ KP GT  Q+RQ+SICGS+ ++TNYRR 
Sbjct: 121 ISQKFDQYMSITSSIRRWPKP-FPTFAMIMRQPKPAGTKIQYRQYSICGSEAMETNYRRG 180

Query: 181 SFDDDIREDIRQWMLQN 198
           SFD  IREDI QWML++
Sbjct: 181 SFDCVIREDILQWMLRS 195

[Close]

BLAST of LsiUNG000180.1 vs. NCBI nr
Match: XP_038888705.1 (uncharacterized protein LOC120078506 [Benincasa hispida])

HSP 1 Score: 366.7 bits (940), Expect = 1.3e-97
Identity = 181/197 (91.88%), Postives = 186/197 (94.42%), Query Frame = 0


Query: 1   MVLWEIALATAYFLGLKRTFKLALKTQRRLVSPKYPRIRQFLRGRTRAVFDVTVKVHQTI 60
           MVLWEIALATAYFLGLKRTFKLALKTQRRLVSPK+PRIRQFLRGRTRAVFDV+VKVH TI
Sbjct: 1   MVLWEIALATAYFLGLKRTFKLALKTQRRLVSPKHPRIRQFLRGRTRAVFDVSVKVHHTI 60

Query: 61  QRQDIKVSTNLGSWISRWLTRTKPSAETHEHPNGTINPGMKMIKKVSNSYLKHQASSRAV 120
           QRQDIKVST L SWISRWL + KPSAETHEHPNGTIN GMKMIKKVSNSYLKHQ SSRAV
Sbjct: 61  QRQDIKVSTKLSSWISRWLNQMKPSAETHEHPNGTINTGMKMIKKVSNSYLKHQTSSRAV 120

Query: 121 IGQKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKPVGTLNQHRQFSICGSDGLKTNYRRR 180
           IG+KFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKP GTLNQ+RQFSICGSDGLKTNYRRR
Sbjct: 121 IGRKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKPAGTLNQYRQFSICGSDGLKTNYRRR 180

Query: 181 SFDDDIREDIRQWMLQN 198
           SFD  IREDI QWMLQN
Sbjct: 181 SFDHGIREDIMQWMLQN 197

[Close]

BLAST of LsiUNG000180.1 vs. NCBI nr
Match: XP_008466006.1 (PREDICTED: uncharacterized protein LOC103503568 [Cucumis melo])

HSP 1 Score: 345.9 bits (886), Expect = 2.3e-91
Identity = 172/197 (87.31%), Postives = 179/197 (90.86%), Query Frame = 0


Query: 1   MVLWEIALATAYFLGLKRTFKLALKTQRRLVSPKYPRIRQFLRGRTRAVFDVTVKVHQTI 60
           MVLWEIALAT YFLGLKRTFKL LKTQRRLVSP+YPRIRQFLRGRTRAVFDVTVKVHQTI
Sbjct: 1   MVLWEIALATTYFLGLKRTFKLVLKTQRRLVSPEYPRIRQFLRGRTRAVFDVTVKVHQTI 60

Query: 61  QRQDIKVSTNLGSWISRWLTRTKPSAETHEHPNGTINPGMKMIKKVSNSYLKHQASSRAV 120
           QRQDIK   NLGSWISRWL R+KPSAET EHPNGT+N GMKMIKKVSNSYLKH+AS+RAV
Sbjct: 61  QRQDIKFDRNLGSWISRWLNRSKPSAETQEHPNGTMNTGMKMIKKVSNSYLKHRASTRAV 120

Query: 121 IGQKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKPVGTLNQHRQFSICGSDGLKTNYRRR 180
           IGQKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKP G + QHRQFSI GS GLKTN RRR
Sbjct: 121 IGQKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKPAGIVIQHRQFSIRGSHGLKTNDRRR 180

Query: 181 SFDDDIREDIRQWMLQN 198
            FD  IREDI QWM+QN
Sbjct: 181 RFDHGIREDIMQWMVQN 197

[Close]

BLAST of LsiUNG000180.1 vs. NCBI nr
Match: XP_004136200.1 (uncharacterized protein LOC101212537 [Cucumis sativus] >KGN60359.1 hypothetical protein Csa_001136 [Cucumis sativus])

HSP 1 Score: 343.2 bits (879), Expect = 1.5e-90
Identity = 169/197 (85.79%), Postives = 180/197 (91.37%), Query Frame = 0


Query: 1   MVLWEIALATAYFLGLKRTFKLALKTQRRLVSPKYPRIRQFLRGRTRAVFDVTVKVHQTI 60
           MVLWEIALAT YFLGLKR FKLALKTQRR+VSPKYPRIRQFLRGRTRAVFDVTVKVHQTI
Sbjct: 1   MVLWEIALATTYFLGLKRAFKLALKTQRRIVSPKYPRIRQFLRGRTRAVFDVTVKVHQTI 60

Query: 61  QRQDIKVSTNLGSWISRWLTRTKPSAETHEHPNGTINPGMKMIKKVSNSYLKHQASSRAV 120
           +RQDIKV+ NL SWISRWL R KPSAET EHP+G+IN GMKM+KKVSNSYLKH+AS+RAV
Sbjct: 61  KRQDIKVNRNLRSWISRWLNRRKPSAETQEHPSGSINTGMKMMKKVSNSYLKHRASTRAV 120

Query: 121 IGQKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKPVGTLNQHRQFSICGSDGLKTNYRRR 180
           IGQKFDQYL+STSSVHRWPKPFFPTIAMIMRQRKP G + QHRQFSICGS GLKTN RRR
Sbjct: 121 IGQKFDQYLASTSSVHRWPKPFFPTIAMIMRQRKPTGIVIQHRQFSICGSHGLKTNDRRR 180

Query: 181 SFDDDIREDIRQWMLQN 198
            FD  IREDI QWM+QN
Sbjct: 181 RFDHGIREDIMQWMVQN 197

[Close]

BLAST of LsiUNG000180.1 vs. NCBI nr
Match: KAG7011374.1 (hypothetical protein SDJN02_26279, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 304.7 bits (779), Expect = 5.9e-79
Identity = 148/197 (75.13%), Postives = 172/197 (87.31%), Query Frame = 0


Query: 1   MVLWEIALATAYFLGLKRTFKLALKTQRRLVSPKYPRIRQFLRGRTRAVFDVTVKVHQTI 60
           MVLWEIALATAYFLGLKRTFKL LKTQRRLVSP +PRIR+FL  RTRA+FDVT+K H+TI
Sbjct: 1   MVLWEIALATAYFLGLKRTFKLVLKTQRRLVSPNHPRIRRFLHRRTRAIFDVTLKAHRTI 60

Query: 61  QRQDIKVSTNLGSWISRWLTRTKPSAETHEHPNGTINPGMKMIKKVSNSYLKHQASSRAV 120
           + +DIKV  N+ SWIS+WL RTKPSA  H+HP+GT N GMKMIK+VSNSY+KHQAS+RA 
Sbjct: 61  EHRDIKVGRNVSSWISQWLNRTKPSAGIHQHPSGT-NTGMKMIKQVSNSYMKHQASTRAA 120

Query: 121 IGQKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKPVGTLNQHRQFSICGSDGLKTNYRRR 180
           IGQK D+YLS TSSVHRWPK  FPTIAMIMRQRKP GT+NQHRQFSIC S+G+KTNY+R 
Sbjct: 121 IGQKVDKYLSFTSSVHRWPKA-FPTIAMIMRQRKPAGTMNQHRQFSICSSEGMKTNYKRG 180

Query: 181 SFDDDIREDIRQWMLQN 198
            F+  IR+DI+QWM++N
Sbjct: 181 RFEHGIRDDIKQWMIRN 195

[Close]

BLAST of LsiUNG000180.1 vs. NCBI nr
Match: KAG6571645.1 (hypothetical protein SDJN03_28373, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 302.0 bits (772), Expect = 3.8e-78
Identity = 147/197 (74.62%), Postives = 171/197 (86.80%), Query Frame = 0


Query: 1   MVLWEIALATAYFLGLKRTFKLALKTQRRLVSPKYPRIRQFLRGRTRAVFDVTVKVHQTI 60
           MVLWEIALATAYFLGLKRTFKL LKTQRRLVSP +PRIR+FL  RTRA+FDVT+K H+TI
Sbjct: 1   MVLWEIALATAYFLGLKRTFKLVLKTQRRLVSPNHPRIRRFLHRRTRAIFDVTLKAHRTI 60

Query: 61  QRQDIKVSTNLGSWISRWLTRTKPSAETHEHPNGTINPGMKMIKKVSNSYLKHQASSRAV 120
           + +DIKV  N+ SWIS+WL RTKPSA  H+HP+GT N GMKMIK+VSNSY+KH+AS+RA 
Sbjct: 61  EHRDIKVGRNISSWISQWLNRTKPSAGIHQHPSGT-NTGMKMIKQVSNSYMKHRASTRAA 120

Query: 121 IGQKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKPVGTLNQHRQFSICGSDGLKTNYRRR 180
           IGQK D+YLS TSSVH WPK  FPTIAMIMRQRKP GT+NQHRQFSIC S+G+KTNYRR 
Sbjct: 121 IGQKVDKYLSFTSSVHGWPKA-FPTIAMIMRQRKPAGTMNQHRQFSICSSEGMKTNYRRG 180

Query: 181 SFDDDIREDIRQWMLQN 198
            F+  IR+DI+QWM++N
Sbjct: 181 RFEHGIRDDIKQWMIRN 195

[Close]

BLAST of LsiUNG000180.1 vs. TAIR 10
Match: AT1G32260.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35480.1); Has 48 Blast hits to 48 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 150.6 bits (379), Expect = 1.3e-36
Identity = 89/206 (43.20%), Postives = 126/206 (61.17%), Query Frame = 0


Query: 1   MVLWEIALATAYFLGLKRTFKLALKTQRRLVSPKYPRIRQFLRGRTRAVFDVTVKVHQTI 60
           MV WEI L TAYFLGL+RT++LALK QRRLV+PK+P+IRQFL  RTR +FDV + VH+ I
Sbjct: 1   MVFWEITLGTAYFLGLRRTYRLALKIQRRLVTPKHPKIRQFLHRRTRKIFDVAISVHKNI 60

Query: 61  QRQDIKVSTNLGSWISRWLTRTKPSAETHEHPNGTINPGMKMIKKVSNSYL----KHQAS 120
           Q +DI+V  NLG+WI RWL + KP+A+    P    N    M K    + L     H  +
Sbjct: 61  QERDIEVGRNLGNWILRWLDKMKPAAQIRTRPELPHNSNSNMDKAKRLTELSRPKSHTNT 120

Query: 121 SRAVIGQKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKPVGTLNQHRQFSICGSDGLKTN 180
           ++    ++ D++L  TS  H   KP FP+++M+++  +P GT  Q+R +    S GL  +
Sbjct: 121 TQTPQNRESDRHL-FTSLKHFRHKP-FPSVSMMIQPPRPNGTTTQYRHYY---SGGLAAS 180

Query: 181 YRRRS------FDDDIREDIRQWMLQ 197
             + S      F+  +R+DI QWM Q
Sbjct: 181 LIQPSYVTGGGFNGVVRKDILQWMAQ 201

[Close]

BLAST of LsiUNG000180.1 vs. TAIR 10
Match: AT2G35480.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32260.1); Has 47 Blast hits to 47 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 146.7 bits (369), Expect = 1.9e-35
Identity = 83/197 (42.13%), Postives = 123/197 (62.44%), Query Frame = 0


Query: 1   MVLWEIALATAYFLGLKRTFKLALKTQRRLVSPKYPRIRQFLRGRTRAVFDVTVKVHQTI 60
           MVLWE+AL TAYFLG++RT++LALKTQRRLVSPK+PRIR F+  RT  +FD+ ++VH+ I
Sbjct: 1   MVLWELALGTAYFLGIRRTYRLALKTQRRLVSPKHPRIRDFMHRRTYQIFDMALRVHKNI 60

Query: 61  QRQDIKVSTNLGSWISRWLTRTKPSAETHEHPNGTINPGMKMIKKV-SNSYLKHQASSRA 120
           Q++D+ +  NLG+WI R L R KPSA+     N    P +   K+V  ++ LK   +++ 
Sbjct: 61  QQRDMVIGRNLGNWILRGLDRMKPSAQVLLPKN--TEPSIDKAKRVLQSTRLKPHVNTQT 120

Query: 121 VIGQKFDQYLSSTSSVHRWPKPFFPTIAMIMRQRKPVGTLNQHRQFSICGSDGLKTNYRR 180
              ++ D+ L  +    R   P      M+++  +  GT  Q+R +S+  S  +K  Y R
Sbjct: 121 PQNREVDRNLFMSLRNFRSKYPI--ASMMMIKPPRSTGTTTQYRPYSVGESSLIKPIYAR 180

Query: 181 RSFDDDIREDIRQWMLQ 197
             F+  IR+DI QWM+Q
Sbjct: 181 GGFNSVIRKDILQWMVQ 193

The following BLAST results are available for this feature:

BLAST of LsiUNG000180.1 vs.


Match Name	E-value	Identity	Description

BLAST of LsiUNG000180.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CRP2	1.1e-91	87.31	uncharacterized protein LOC103503568 OS=Cucumis melo OX=3656 GN=LOC103503568 PE=...	[more]
A0A0A0LH53	7.2e-91	85.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G901040 PE=4 SV=1	[more]
A0A6J1HFJ9	2.4e-78	74.62	uncharacterized protein LOC111463851 OS=Cucurbita moschata OX=3662 GN=LOC1114638...	[more]
A0A6J1HU73	7.7e-77	73.98	uncharacterized protein LOC111466890 OS=Cucurbita maxima OX=3661 GN=LOC111466890...	[more]
A0A6J1DZV3	1.2e-72	72.59	uncharacterized protein LOC111025863 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of LsiUNG000180.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888705.1	1.3e-97	91.88	uncharacterized protein LOC120078506 [Benincasa hispida]	[more]
XP_008466006.1	2.3e-91	87.31	PREDICTED: uncharacterized protein LOC103503568 [Cucumis melo]	[more]
XP_004136200.1	1.5e-90	85.79	uncharacterized protein LOC101212537 [Cucumis sativus] >KGN60359.1 hypothetical ...	[more]
KAG7011374.1	5.9e-79	75.13	hypothetical protein SDJN02_26279, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6571645.1	3.8e-78	74.62	hypothetical protein SDJN03_28373, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of LsiUNG000180.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32260.1	1.3e-36	43.20	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G35480.1	1.9e-35	42.13	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35998	FAMILY NOT NAMED	coord: 1..196

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
LsiUNG000180	LsiUNG000180	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
LsiUNG000180.1.exon.1	LsiUNG000180.1.exon.1	exon
LsiUNG000180.1.exon.2	LsiUNG000180.1.exon.2	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
LsiUNG000180.1.three_prime_UTR.1	LsiUNG000180.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
LsiUNG000180.1.CDS.2	LsiUNG000180.1.CDS.2	CDS
LsiUNG000180.1.CDS.1	LsiUNG000180.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
LsiUNG000180.1.five_prime_UTR.1	LsiUNG000180.1.five_prime_UTR.1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
LsiUNG000180.1	LsiUNG000180.1-protein	polypeptide