Lsi08G005160.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi08G005160.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr08: 13104018 .. 13104666 (+)
Sequence length	264
RNA-Seq Expression	Lsi08G005160.1
Synteny	Lsi08G005160.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGCAACAACAATGGTCCTTCTAGGCTTGAAAGATCCCTCTCCTTGACCTCCGAGCCTAGGACTCTTAAACAATATGAAATGGTCTCTAATTACTATATTTTACTTTTCCCTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATCATCTTTGTTTTTAATTTTTCTCAATGTTTTTGTTTATAACAGGCAATCGCATCCATGCAAGCCATGGAGAAACAGCGCCTTGCCGGAGGAACCATTAATGTAAAATCAAACACACCATAATATTACTCCCAAACAAATTACTATCATTTTCTAATAATACTTAGCTTGACCCATAAACAAATTACTAATAAGTTTTTTTTAAAAAAAGAAATTTCATAATGTAAGCAGCATTTTGAATCGTTTTATATTTGTTTAAAGTATTTAATAAGTCGTTGATTTTTTTTATTATTATTATTAGTGTATGGTACTGTGGGATTGATTTAATTATGGTTTTTTTTTTTTTTTTTTTTTTGTTTTTAGGGTAATGCACAGAGTGTTATTACTGCTGCTACTACTACTACTGGAGGGGGGAAGAAGGGAAAAGGTGATCGGGAAGAAGGGGCGACGGGTGGTGCAGCGGCGGTGAAGCTTCCGGCGTGA

mRNA sequence

ATGGGAAGCAACAACAATGGTCCTTCTAGGCTTGAAAGATCCCTCTCCTTGACCTCCGAGCCTAGGACTCTTAAACAATATGAAATGGCAATCGCATCCATGCAAGCCATGGAGAAACAGCGCCTTGCCGGAGGAACCATTAATGGTAATGCACAGAGTGTTATTACTGCTGCTACTACTACTACTGGAGGGGGGAAGAAGGGAAAAGGTGATCGGGAAGAAGGGGCGACGGGTGGTGCAGCGGCGGTGAAGCTTCCGGCGTGA

Coding sequence (CDS)

ATGGGAAGCAACAACAATGGTCCTTCTAGGCTTGAAAGATCCCTCTCCTTGACCTCCGAGCCTAGGACTCTTAAACAATATGAAATGGCAATCGCATCCATGCAAGCCATGGAGAAACAGCGCCTTGCCGGAGGAACCATTAATGGTAATGCACAGAGTGTTATTACTGCTGCTACTACTACTACTGGAGGGGGGAAGAAGGGAAAAGGTGATCGGGAAGAAGGGGCGACGGGTGGTGCAGCGGCGGTGAAGCTTCCGGCGTGA

Protein sequence

MGSNNNGPSRLERSLSLTSEPRTLKQYEMAIASMQAMEKQRLAGGTINGNAQSVITAATTTTGGGKKGKGDREEGATGGAAAVKLPA

Homology

[Close]

BLAST of Lsi08G005160.1 vs. NCBI nr
Match: KAE8647188.1 (hypothetical protein Csa_019045, partial [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 2.8e-17
Identity = 61/82 (74.39%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 3   SNNNGPSRLERSLSLTSEPRTLKQYEMAIASMQAMEKQRLAGGTINGNAQSVITAATTTT 62
           SNNNGPSRLERSLSLTSEPRTL+QYEMAIASMQAMEKQRLAG     N   + T   TTT
Sbjct: 41  SNNNGPSRLERSLSLTSEPRTLRQYEMAIASMQAMEKQRLAG---MNNGIFLQTTTPTTT 100

Query: 63  GGGKKGKGDREEGATGGAAAVK 85
            GG KGK D EEGA+GGAA  K
Sbjct: 101 TGGTKGKVDGEEGASGGAAVGK 119

[Close]

BLAST of Lsi08G005160.1 vs. NCBI nr
Match: XP_031743959.1 (mini-chromosome maintenance complex-binding protein-like [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 2.8e-17
Identity = 61/82 (74.39%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 3  SNNNGPSRLERSLSLTSEPRTLKQYEMAIASMQAMEKQRLAGGTINGNAQSVITAATTTT 62
          SNNNGPSRLERSLSLTSEPRTL+QYEMAIASMQAMEKQRLAG     N   + T   TTT
Sbjct: 16 SNNNGPSRLERSLSLTSEPRTLRQYEMAIASMQAMEKQRLAG---MNNGIFLQTTTPTTT 75

Query: 63 GGGKKGKGDREEGATGGAAAVK 85
           GG KGK D EEGA+GGAA  K
Sbjct: 76 TGGTKGKVDGEEGASGGAAVGK 94

[Close]

BLAST of Lsi08G005160.1 vs. NCBI nr
Match: KAG6578921.1 (hypothetical protein SDJN03_23369, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 54.3 bits (129), Expect = 6.1e-04
Identity = 37/80 (46.25%), Postives = 43/80 (53.75%), Query Frame = 0


Query: 8  PSRLERSLSLTSEPRTLKQYEMAIASMQAMEKQRLAGGTINGNAQSVITAATTTTGGGKK 67
          PS+L+RSLS  SEPR  +QY+MAIASMQAMEKQ  AG                   G   
Sbjct: 17 PSKLQRSLSTASEPRNTQQYQMAIASMQAMEKQSRAG-------------INALLSGVAN 76

Query: 68 GKGDREEGATGGAAAVKLPA 88
          G+ DRE G  G +  V  PA
Sbjct: 77 GQADREGGTPGASPPVNFPA 83

The following BLAST results are available for this feature:

BLAST of Lsi08G005160.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi08G005160.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi08G005160.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647188.1	2.8e-17	74.39	hypothetical protein Csa_019045, partial [Cucumis sativus]	[more]
XP_031743959.1	2.8e-17	74.39	mini-chromosome maintenance complex-binding protein-like [Cucumis sativus]	[more]
KAG6578921.1	6.1e-04	46.25	hypothetical protein SDJN03_23369, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lsi08G005160.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi08G005160	Lsi08G005160	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi08G005160.1.exon.1	Lsi08G005160.1.exon.1	exon
Lsi08G005160.1.exon.2	Lsi08G005160.1.exon.2	exon
Lsi08G005160.1.exon.3	Lsi08G005160.1.exon.3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi08G005160.1.CDS.1	Lsi08G005160.1.CDS.1	CDS
Lsi08G005160.1.CDS.2	Lsi08G005160.1.CDS.2	CDS
Lsi08G005160.1.CDS.3	Lsi08G005160.1.CDS.3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi08G005160.1	Lsi08G005160.1-protein	polypeptide