Lsi06G016790.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi06G016790.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr06: 26982633 .. 26986782 (-)
Sequence length495
RNA-Seq ExpressionLsi06G016790.1
SyntenyLsi06G016790.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGGTAGTACTGTAGTTTGTACAGTGTCTTCAAAAGCAAAGCAAAGCAAAGCGAAGCGTATGTATATGGTATCAGACCTCGCTTTCTCTCCCTGTTGGAAAAGGGAAAAAAAGTAAACAAATTAGCAAAAGCAAATAAAGTTGGCGGTTGGTGATGCCATTGCGAATTGCCATGCTTTGCCCATCATGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGAAGAAGAAGAAGAAGAAGAAGGTGCAGCAGAGCAGGCGGTACCTTTTGGCTTTCTGGTTTCTGGAGTGGTTGATTTGGATTAGCAACTGCACCTTGGAGGGAGGTGTAACTGTAGATTATTATTATTATTATAATTTTTTTTTTTTTTCGGAGGTGGATGAAGACGTAGCAGATCTTGAATCTTGATCTGAATTATAATTACCCAAAGGTAACGATATCCCTCGTGCTTTTCTTATATATATGTATATATTAAGAAAAGAAATGTCCGTCGTGTCTGATGCCTCTAAAATATTGTGGTAATTTAGTGGACATCTGGCCCTGCATGTAATCTCCATCAACCGCTGTCAATGCATACTCACATATTACTTCTTTTTTTAAGTTATGTTTTAGTCTATAAATTTTATATAATTGATATTTTTAGGAAAATTTTTAAAAATAGGAAAATGAGGAAAACTATTTACACAAAATAGTAAAATTTTTAGATAGTTGTGATAGACGCCGATAGAAGTCTATTAGGGTCTATCAGTGATAGAAATAATAGAAGTCTATCACTTATAGATGCTGATAGAAGTCCATAATGTATTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTGCTATTTTCTATAAATAGTTTGACATGTTTTCTATTTGTAAAAATTTTCCATATTTTTAGTCTTTAAATTTTGAAAATAGACTTTTTTAGTTATTTAATTTTCAAGAATGAGTTTAACGGTCTCTTCTACTTACAGAATTGTTAAATAAAAATGAAAAGATGATTGAAGTTAAAATTACACACGTGGTTGTTGATTGTGTTTTAAAAATTGTCTAATTAGACTTTTATTTTTAAATTAAAAAATCAATAAAATAAAACCTAGAATTTCATTAAACCCATGCATTCTACTTCTCAAATCGCAAAAGCTTCAGCCTCATCTTCGCAACAAGTCTAGAACCTTTTTTATGGAAGTAGCTGAAGCTTCGTCGTGGTGGTTTTTTGCAATTCATTGCTTAAATTGACCGATGTGAAGGTGCAACACTGAAGAGGAATCAAATGGTTTGAAGAGATTGATGCTTTGCTATTTGAGAATAGAAAATACGTGGTTTACTGGATTTTAGAGTTTTACTCTATTCAGACTTTCGTTTGAATTTTAAAAAAATATTTATTTAAAAAATTTAGGGACCGCACGCACATAATGCTAAAAACTCGAGGACTAAAATGGTTTTTTCCCCTAAATACTACTTTTATGAACTCCTTTTCATTTTTTTTCTTTTTTCTTTTTTTCTTTTTGGCAAAATTTGTGAAATCCTTTCAGAAAAATACTACTATAAGAATAATATTAAATTTTAATAATATTTTTTTATGCTACACCAAATCATTATAAATTGTAAAGTATATTAACTAAATTGTTATTTATTAAAATTCAAAGACTAAATTGTTATATAAATTAAATCGTTATAAATTGAAGTTTAAATATTAAATTATTACTGTTTGACGAGATTTCTTGAGAAATTTAAGTCATTAAATTCGAACTATGAATTTGTATTGATATAATATAGTGAGTACACCCTTTAATACATGATCATTTGATACTTTCTTTCAAAAAGTAAAATTTAATCCTTAGGCTTATTAATCTTCTTGGATGATCGACCTTTGGGCTTGATGATCTTCTTGGAGGATCAATATTTTGACTTATGATATTTTTTGATTAGTCTTTGGGCTTGATGATCTTATTTGGAGAATCGGCGTTTGGGCTTGTTGATCTTCTTGGAGATCAGCCTTTGGGTTTGATGATTTCTTGGAGGATCGACCTTTGACTTATTAATCGACTTGGGTTGGCCATTGGCTTGTTGATCGGGTTGGATCGGCCTCTAGCTTATTAATCGACTTGAATCAGACTCTGGCTTATTGATTGACTTGGATTAGCCTTTGAAATTTCTGACTTCAAGAACTTCAAAATGTCTTTTGATATACTGAAAGTCTTATAAGTTTTAGTCTTTAGATCTTCAAGAGAGCAAAAGTTAATATTTTGAGCTTTAGTTTGTCTTCAAATCTTCAACTAAAGATGTCCACGGGGCGGGGCGGGAGCAAAGATGGCTTCCTCGCTCCTCGTCCCCGTTCCTCATTTCATTCTCCGTCCCCACCAAATTCCCCACGGGGATCATGGCGGGGATTTCCCGCAGTAAATTTTTCCCGTTTGATTTTTTTTTTTTAAAAAAAAGTCAATTAACATAAATCACTATTATGGAAAAATTTAACTTAACTGGTTAACTTTTATATGATTAGTTCTACATGACAATTGAAATTTAAAAAGAAATTACTCAAAATTTTCGAGTGAAAGAAACTAATTATCTATCAAATTATTCATATATATAATCTAAATTTATTAAAATTCAAACATATCTTTTTTTACACTAATTCAAACATATTCATTATTTTGACTATTAAACAATAAATCTAGAAAATTAAATGTAATATTTATATAATGAAAATAAATAACATAACATTAAATTACTATAATAAATATAAGAAAATGGGACGGGGACGGTGAATGCTTTCGGGGAATTTTTTTTCCCACTCTCTCTCATTTCCCACCTAAACGGACCCATCTCCACAGTGGAAGTGGACATATTTATCTTCAACGCTTTGAGAGAGTTGTATTTTTTTAGACCTTTAAAGTTTCAACATCTTCAGAGCTTTGGAGCCTCCGGAGCTTCAAATTCTCTACCTTTAGTTCTTCTAATCTTAAGTGAATTGTAAACTTTAAGATTGTTGAATTTCTAGGTCTCCAATTTCTAGGTCTTCAATTTTTAAAAGGGTCTTTTTTTTCCAAAGTAAAACTGAAAGTGAAATGGGGCCAAAAATGCTATTCTCTAATTTCTTTCTTCCTTCATAGTTCACCGAGACTCCAAGGACTGCCATACTCCAGCTGATTTCATCCGACTCCTCCTTGTCTGTGTTAGTTACAGACGGTTGCCAGCATTAGCATGCGGCTGCACAAACTCGATTACGAGAACGTCGGTAGGGTATAACAGTTACCGATTCACCAAACATTTATCTACGACACGCCTTCCCGTTATCAGTTGTAAGCAAGATTACTGGATTTCTAAAGGCAAATCTCGATTGCTGACCAAGGTTTGTAACTTTCACGCTAATAGTTTAGTGAACGCTTGATAATATTGTTTGTTACCATTATGCTGGATTGGGGTGGTGGAAATACTTAAACATATATGTCTTTAATTTCAAATCTTAAAAGTGTGGAGCATTTTCTTTTAGAGTACATTCTGGGTAAGGTGCCAAGTTTGTAGTTTTGTTTGAGGTCAGGAAGAAATGTTGATGTGAAGTGGGGAAAACAATCTTTTTAGGTTTTAGTTTTCAAGAGGGAGACTTGCAGAAGGGAACAATCTCCTCGAGTGGGATGGAGAAGGAGAAACTGCCACATAAGCCCAAAAAACTAGTTAAAGTGACGCAGAATTAATATGTTTCTAGTTAGGACATGCCATGGTGCAATCACTGCTGCATCATTTTTCTGACGGTGTCCTAACAGAATTCTGATATGAATTAAATCAAAAAGAAAATCAAAGAGTAGAATTCTGATCTGAAGGATCATTCAAGGCTGTTTTTTAAATTTTTAGAGATTTATATGTCACTTTTAATTTAAAAGATGAAAAAAATCTTTTCCTTATTTGCTCAAGCTTGTAGTTGTTATACAAGAACAAGATGACTTACAATGGATCTTTTTGGATTTCAAGAAACAAGCGGATCATTCTCATTTCACCAACTTCAACTGTGAGGGCACCAACAAATTTACAGACCGTACAAGATTACAAGCGCAATACATGTGTGGTCTACTTGAGAAATTCTCATTTGGGAATTGAAGCGATTTGCTAA

mRNA sequence

ATGAATGTGTCTTCAAAAGCAAAGCAAAGCAAAGCGAAGCGTATGTATATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGAAGAAGAAGAAGAAGAAGAAGGTGCAGCAGAGCAGGCGACGGTTGCCAGCATTAGCATGCGGCTGCACAAACTCGATTACGAGAACGTCGGTAGGGTATAACAGTTACCGATTCACCAAACATTTATCTACGACACGCCTTCCCGTTATCAGTTGTAAGCAAGATTACTGGATTTCTAAAGGCAAATCTCGATTGCTGACCAAGTTGTTATACAAGAACAAGATGACTTACAATGGATCTTTTTGGATTTCAAGAAACAAGCGGATCATTCTCATTTCACCAACTTCAACTGTGAGGGCACCAACAAATTTACAGACCGTACAAGATTACAAGCGCAATACATGTGTGGTCTACTTGAGAAATTCTCATTTGGGAATTGAAGCGATTTGCTAA

Coding sequence (CDS)

ATGAATGTGTCTTCAAAAGCAAAGCAAAGCAAAGCGAAGCGTATGTATATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGAAGAAGAAGAAGAAGAAGAAGGTGCAGCAGAGCAGGCGACGGTTGCCAGCATTAGCATGCGGCTGCACAAACTCGATTACGAGAACGTCGGTAGGGTATAACAGTTACCGATTCACCAAACATTTATCTACGACACGCCTTCCCGTTATCAGTTGTAAGCAAGATTACTGGATTTCTAAAGGCAAATCTCGATTGCTGACCAAGTTGTTATACAAGAACAAGATGACTTACAATGGATCTTTTTGGATTTCAAGAAACAAGCGGATCATTCTCATTTCACCAACTTCAACTGTGAGGGCACCAACAAATTTACAGACCGTACAAGATTACAAGCGCAATACATGTGTGGTCTACTTGAGAAATTCTCATTTGGGAATTGAAGCGATTTGCTAA

Protein sequence

MNVSSKAKQSKAKRMYMKKKKKKKKKKKKKKKKTKKKKKKKVQQSRRRLPALACGCTNSITRTSVGYNSYRFTKHLSTTRLPVISCKQDYWISKGKSRLLTKLLYKNKMTYNGSFWISRNKRIILISPTSTVRAPTNLQTVQDYKRNTCVVYLRNSHLGIEAIC
Homology
[Close]
BLAST of Lsi06G016790.1 vs. ExPASy TrEMBL
Match: A0A6J1E1W4 (uncharacterized protein LOC111429829 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111429829 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.3e-16
Identity = 46/56 (82.14%), Postives = 49/56 (87.50%), Query Frame = 0 

Query: 109 MTYNGSFWISRNKRIILISPTSTVRAPTNLQTVQDYKRNTCVVYLRNSHLGIEAIC 165
           M+YN S WISR+KRIIL SPTSTVRAPTNLQT+ DYKRN CVVYL NSHLGIE IC
Sbjct: 1   MSYNRSIWISRSKRIILNSPTSTVRAPTNLQTLLDYKRNICVVYLGNSHLGIEVIC 56

[Close]
BLAST of Lsi06G016790.1 vs. ExPASy TrEMBL
Match: A0A6J1JDC3 (uncharacterized protein LOC111484792 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484792 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.8e-15
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 0 

Query: 109 MTYNGSFWISRNKRIILISPTSTVRAPTNLQTVQDYKRNTCVVYLRNSHLGIEAI 164
           M+YN S WISR+KRIIL SPTSTVRAPTNLQT+ DYKRN CVVYL NSHLGIE I
Sbjct: 1   MSYNRSIWISRSKRIILNSPTSTVRAPTNLQTLLDYKRNICVVYLGNSHLGIEEI 55

[Close]
BLAST of Lsi06G016790.1 vs. NCBI nr
Match: XP_022921621.1 (uncharacterized protein LOC111429829 isoform X1 [Cucurbita moschata])

HSP 1 Score: 96.3 bits (238), Expect = 2.6e-16
Identity = 46/56 (82.14%), Postives = 49/56 (87.50%), Query Frame = 0 

Query: 109 MTYNGSFWISRNKRIILISPTSTVRAPTNLQTVQDYKRNTCVVYLRNSHLGIEAIC 165
           M+YN S WISR+KRIIL SPTSTVRAPTNLQT+ DYKRN CVVYL NSHLGIE IC
Sbjct: 1   MSYNRSIWISRSKRIILNSPTSTVRAPTNLQTLLDYKRNICVVYLGNSHLGIEVIC 56

[Close]
BLAST of Lsi06G016790.1 vs. NCBI nr
Match: XP_022987156.1 (uncharacterized protein LOC111484792 isoform X1 [Cucurbita maxima])

HSP 1 Score: 92.4 bits (228), Expect = 3.8e-15
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 0 

Query: 109 MTYNGSFWISRNKRIILISPTSTVRAPTNLQTVQDYKRNTCVVYLRNSHLGIEAI 164
           M+YN S WISR+KRIIL SPTSTVRAPTNLQT+ DYKRN CVVYL NSHLGIE I
Sbjct: 1   MSYNRSIWISRSKRIILNSPTSTVRAPTNLQTLLDYKRNICVVYLGNSHLGIEEI 55

The following BLAST results are available for this feature:
BLAST of Lsi06G016790.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi06G016790.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E1W41.3e-1682.14uncharacterized protein LOC111429829 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1JDC31.8e-1581.82uncharacterized protein LOC111484792 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
BLAST of Lsi06G016790.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022921621.12.6e-1682.14uncharacterized protein LOC111429829 isoform X1 [Cucurbita moschata][more]
XP_022987156.13.8e-1581.82uncharacterized protein LOC111484792 isoform X1 [Cucurbita maxima][more]
BLAST of Lsi06G016790.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 17..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..46

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi06G016790Lsi06G016790gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi06G016790.1.exon.5Lsi06G016790.1.exon.5exon
Lsi06G016790.1.exon.4Lsi06G016790.1.exon.4exon
Lsi06G016790.1.exon.3Lsi06G016790.1.exon.3exon
Lsi06G016790.1.exon.2Lsi06G016790.1.exon.2exon
Lsi06G016790.1.exon.1Lsi06G016790.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi06G016790.1.CDS.5Lsi06G016790.1.CDS.5CDS
Lsi06G016790.1.CDS.4Lsi06G016790.1.CDS.4CDS
Lsi06G016790.1.CDS.3Lsi06G016790.1.CDS.3CDS
Lsi06G016790.1.CDS.2Lsi06G016790.1.CDS.2CDS
Lsi06G016790.1.CDS.1Lsi06G016790.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi06G016790.1Lsi06G016790.1-proteinpolypeptide