Lsi05G009420.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G009420.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Nascent polypeptide-associated complex subunit alpha, muscle-specific form
Location	chr05: 16556019 .. 16556984 (+)
Sequence length	651
RNA-Seq Expression	Lsi05G009420.1
Synteny	Lsi05G009420.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTTTTATTTTGATTTTTTTTTTCTGGGTTGCGATTGAATGAGTCTTTCCCTACAATTATTTAGCTTTCATTTCTAGATCTGGTTAGATAAGGGTAAATTTTCATTTGTTTATGTGTTTTGTTTTTCAGCTGCACAGGTGGAATCTTCTTTGGTATAACTTGTCGAGGTTCGATTTGGATCTAGCGTGGAAGAGATAAACTAGGGTTGTTTTAAAGGTTGTGACTTTTTAGTATAGTTATCAGCTTTGTGTTGAGTTGTAGAAGTTGGATCTACTGGGTGAAGCTGAAATCGTGTCTTTTAACTTAAAACTGGATACATACTTTGACTTGGAAGTTATTTTGCTATGGAAGCAGTGGTTGTTATTGAGCAGCATAGGAACCAATATTATGATCGGGTCAAGCCGCATGGGCCAGCTCGGTTTGGATCACTCCCGTCCCGAGACTTCAGAGGGATGAATTGTAGGAGTTTCCAGTCGGGAGCTGGTATTCTTCCAACTCCTTTGAAGGCTTGTACCTCTGAAACAAAACATGTCTACCCTTCTTCTCCTAAAACACCCCCAACTTGTTTAAGTTCCAACTCCGAAAATGGAAAACAACTTACTACTGTGAGAAGTGCTCCCATTCCTATCAAACCCAAATTCTCAAACAAGAATAGTTCTTTCCATGAAGAATTCTATGACAGGAGTTTCTCGTTTTCTGAGCTTTGGGCTGGACCCACTTACTCAAATTCACCACCTCCAAGTTCATTACCCATTCCCAAATTTTCAGTTGCTAAGAGAACCACGTCACTGGAGTTGCCTCGTTCTGCCCCTGAATTTGAAATGCATCATCCATCTGCTAAGTCTGCACCTCCATCTCCAACTCGGGAGCAAAACTTTTCCTCCAGATTTTTCTTTCATAGTGCTGACTCTGCGACTAAGACTTTACGTCGCATTCTTAATCTTGATGTTGACAATGAATGA

mRNA sequence

ATGATCTGCACAGGTGGAATCTTCTTTGGTATAACTTGTCGAGTGGTTGTTATTGAGCAGCATAGGAACCAATATTATGATCGGGTCAAGCCGCATGGGCCAGCTCGGTTTGGATCACTCCCGTCCCGAGACTTCAGAGGGATGAATTGTAGGAGTTTCCAGTCGGGAGCTGGTATTCTTCCAACTCCTTTGAAGGCTTGTACCTCTGAAACAAAACATGTCTACCCTTCTTCTCCTAAAACACCCCCAACTTGTTTAAGTTCCAACTCCGAAAATGGAAAACAACTTACTACTGTGAGAAGTGCTCCCATTCCTATCAAACCCAAATTCTCAAACAAGAATAGTTCTTTCCATGAAGAATTCTATGACAGGAGTTTCTCGTTTTCTGAGCTTTGGGCTGGACCCACTTACTCAAATTCACCACCTCCAAGTTCATTACCCATTCCCAAATTTTCAGTTGCTAAGAGAACCACGTCACTGGAGTTGCCTCGTTCTGCCCCTGAATTTGAAATGCATCATCCATCTGCTAAGTCTGCACCTCCATCTCCAACTCGGGAGCAAAACTTTTCCTCCAGATTTTTCTTTCATAGTGCTGACTCTGCGACTAAGACTTTACGTCGCATTCTTAATCTTGATGTTGACAATGAATGA

Coding sequence (CDS)

ATGATCTGCACAGGTGGAATCTTCTTTGGTATAACTTGTCGAGTGGTTGTTATTGAGCAGCATAGGAACCAATATTATGATCGGGTCAAGCCGCATGGGCCAGCTCGGTTTGGATCACTCCCGTCCCGAGACTTCAGAGGGATGAATTGTAGGAGTTTCCAGTCGGGAGCTGGTATTCTTCCAACTCCTTTGAAGGCTTGTACCTCTGAAACAAAACATGTCTACCCTTCTTCTCCTAAAACACCCCCAACTTGTTTAAGTTCCAACTCCGAAAATGGAAAACAACTTACTACTGTGAGAAGTGCTCCCATTCCTATCAAACCCAAATTCTCAAACAAGAATAGTTCTTTCCATGAAGAATTCTATGACAGGAGTTTCTCGTTTTCTGAGCTTTGGGCTGGACCCACTTACTCAAATTCACCACCTCCAAGTTCATTACCCATTCCCAAATTTTCAGTTGCTAAGAGAACCACGTCACTGGAGTTGCCTCGTTCTGCCCCTGAATTTGAAATGCATCATCCATCTGCTAAGTCTGCACCTCCATCTCCAACTCGGGAGCAAAACTTTTCCTCCAGATTTTTCTTTCATAGTGCTGACTCTGCGACTAAGACTTTACGTCGCATTCTTAATCTTGATGTTGACAATGAATGA

Protein sequence

MICTGGIFFGITCRVVVIEQHRNQYYDRVKPHGPARFGSLPSRDFRGMNCRSFQSGAGILPTPLKACTSETKHVYPSSPKTPPTCLSSNSENGKQLTTVRSAPIPIKPKFSNKNSSFHEEFYDRSFSFSELWAGPTYSNSPPPSSLPIPKFSVAKRTTSLELPRSAPEFEMHHPSAKSAPPSPTREQNFSSRFFFHSADSATKTLRRILNLDVDNE

Homology

[Close]

BLAST of Lsi05G009420.1 vs. ExPASy TrEMBL
Match: A0A0A0KHP6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G410620 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.3e-98
Identity = 183/202 (90.59%), Postives = 192/202 (95.05%), Query Frame = 0


Query: 15  VVVIEQHRNQYYDRVKPHGPARFGSLPSRDFRGMNCRSFQSGAGILPTPLKACTSETKHV 74
           VVVIEQHRNQYYDRVKPHGPARFGSL SRDFRGMNCRSFQSGAGILPTPLKAC SET+H 
Sbjct: 4   VVVIEQHRNQYYDRVKPHGPARFGSLRSRDFRGMNCRSFQSGAGILPTPLKACNSETEHF 63

Query: 75  YPSSPKTPPTCLSSNSENGKQLTTVRSAPIPIKPKFSNKNSSFHEEFYDRSFSFSELWAG 134
           YP SPKTPP CL+SNSEN KQL T+RSAPIPIKPK SN++++FHEEFYDRSFSFSELWAG
Sbjct: 64  YP-SPKTPPPCLTSNSENRKQLATMRSAPIPIKPKSSNQSNAFHEEFYDRSFSFSELWAG 123

Query: 135 PTYSNSPPPSSLPIPKFSVAKRTTSLELPRSAPEFEMHHPSAKSAPPSPTREQNFSSRFF 194
           PTYSNSPPPSSLPIPKFSVAKRTTSLEL RSAPEFEMHHPSAKSAPPSPTR+QNFS+RFF
Sbjct: 124 PTYSNSPPPSSLPIPKFSVAKRTTSLELARSAPEFEMHHPSAKSAPPSPTRDQNFSARFF 183

Query: 195 FHSADSATKTLRRILNLDVDNE 217
           FHSADSATKTLRRILNLDV NE
Sbjct: 184 FHSADSATKTLRRILNLDVANE 204

[Close]

BLAST of Lsi05G009420.1 vs. ExPASy TrEMBL
Match: A0A1S4DXL6 (uncharacterized protein LOC107990294 OS=Cucumis melo OX=3656 GN=LOC107990294 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 6.3e-96
Identity = 180/202 (89.11%), Postives = 189/202 (93.56%), Query Frame = 0


Query: 15  VVVIEQHRNQYYDRVKPHGPARFGSLPSRDFRGMNCRSFQSGAGILPTPLKACTSETKHV 74
           VVVIEQHRNQYYDRVKPHGPARFGSL SRDF GMNCRSFQSGAGILPTPLKACTSET+H 
Sbjct: 4   VVVIEQHRNQYYDRVKPHGPARFGSLRSRDFGGMNCRSFQSGAGILPTPLKACTSETEHF 63

Query: 75  YPSSPKTPPTCLSSNSENGKQLTTVRSAPIPIKPKFSNKNSSFHEEFYDRSFSFSELWAG 134
           YP SPKTPP  L+SNSEN KQL T RSAPI IKPK SN+++ FHEEFYDRSFSFSELWAG
Sbjct: 64  YP-SPKTPPPFLTSNSENRKQLATARSAPISIKPKLSNQSNVFHEEFYDRSFSFSELWAG 123

Query: 135 PTYSNSPPPSSLPIPKFSVAKRTTSLELPRSAPEFEMHHPSAKSAPPSPTREQNFSSRFF 194
           PTYSNSPPPSSLPIPKFSVAKRTTSLEL RSAPEFEMHHPSAKSAPPSPTR+Q+FS+R+F
Sbjct: 124 PTYSNSPPPSSLPIPKFSVAKRTTSLELARSAPEFEMHHPSAKSAPPSPTRDQDFSARYF 183

Query: 195 FHSADSATKTLRRILNLDVDNE 217
           FHSADSATKTLRRILNLDVDNE
Sbjct: 184 FHSADSATKTLRRILNLDVDNE 204

[Close]

BLAST of Lsi05G009420.1 vs. ExPASy TrEMBL
Match: A0A5A7UUU2 (Nascent polypeptide-associated complex subunit alpha, muscle-specific form OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G001600 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 4.7e-75
Identity = 145/163 (88.96%), Postives = 150/163 (92.02%), Query Frame = 0


Query: 15  VVVIEQHRNQYYDRVKPHGPARFGSLPSRDFRGMNCRSFQSGAGILPTPLKACTSETKHV 74
           VVVIEQHRNQYYDRVKPHGPARFGSL SRDF GMNCRSFQSGAGILPTPLKACTSET+H 
Sbjct: 4   VVVIEQHRNQYYDRVKPHGPARFGSLRSRDFGGMNCRSFQSGAGILPTPLKACTSETEHF 63

Query: 75  YPSSPKTPPTCLSSNSENGKQLTTVRSAPIPIKPKFSNKNSSFHEEFYDRSFSFSELWAG 134
           YP SPKTPP  L+SNSEN KQL T RSAPI IKPK SN+++ FHEEFYDRSFSFSELWAG
Sbjct: 64  YP-SPKTPPPFLTSNSENRKQLATARSAPISIKPKLSNQSNVFHEEFYDRSFSFSELWAG 123

Query: 135 PTYSNSPPPSSLPIPKFSVAKRTTSLELPRSAPEFEMHHPSAK 178
           PTYSNSPPPSSLPIPKFSVAKRTTSLEL RSAPEFEMHHPSAK
Sbjct: 124 PTYSNSPPPSSLPIPKFSVAKRTTSLELARSAPEFEMHHPSAK 165

[Close]

BLAST of Lsi05G009420.1 vs. ExPASy TrEMBL
Match: A0A5D3CPQ8 (Nascent polypeptide-associated complex subunit alpha, muscle-specific form OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold496G00390 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 4.7e-75
Identity = 145/163 (88.96%), Postives = 150/163 (92.02%), Query Frame = 0


Query: 15  VVVIEQHRNQYYDRVKPHGPARFGSLPSRDFRGMNCRSFQSGAGILPTPLKACTSETKHV 74
           VVVIEQHRNQYYDRVKPHGPARFGSL SRDF GMNCRSFQSGAGILPTPLKACTSET+H 
Sbjct: 4   VVVIEQHRNQYYDRVKPHGPARFGSLRSRDFGGMNCRSFQSGAGILPTPLKACTSETEHF 63

Query: 75  YPSSPKTPPTCLSSNSENGKQLTTVRSAPIPIKPKFSNKNSSFHEEFYDRSFSFSELWAG 134
           YP SPKTPP  L+SNSEN KQL T RSAPI IKPK SN+++ FHEEFYDRSFSFSELWAG
Sbjct: 64  YP-SPKTPPPFLTSNSENRKQLATARSAPISIKPKLSNQSNVFHEEFYDRSFSFSELWAG 123

Query: 135 PTYSNSPPPSSLPIPKFSVAKRTTSLELPRSAPEFEMHHPSAK 178
           PTYSNSPPPSSLPIPKFSVAKRTTSLEL RSAPEFEMHHPSAK
Sbjct: 124 PTYSNSPPPSSLPIPKFSVAKRTTSLELARSAPEFEMHHPSAK 165

[Close]

BLAST of Lsi05G009420.1 vs. ExPASy TrEMBL
Match: A0A6P4A757 (uncharacterized protein LOC107425950 OS=Ziziphus jujuba OX=326968 GN=LOC107425950 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 2.6e-57
Identity = 127/194 (65.46%), Postives = 142/194 (73.20%), Query Frame = 0


Query: 15  VVVIEQHRNQYYDRVKPHGPARFGSLPSRDFRGMNCRSFQSGAGILPTPLKACTSETKHV 74
           +VV+ QHRNQYY R KP GPAR+GS PSRDFRG+NCRSFQS AG+LPTP KACTS     
Sbjct: 4   LVVVAQHRNQYYSRGKPQGPARYGSSPSRDFRGINCRSFQSAAGLLPTPFKACTSPVSKR 63

Query: 75  YPSSPKTPPTCLSSNSEN-GKQLTTVRSAPIPIKPKFSNKNSSFHEEFYDRSFSFSELWA 134
             SSPKTP   L S+++N  + LT  +S PI I    S+K   F EE  + + SFSELWA
Sbjct: 64  ACSSPKTPIPSLYSHTDNKTRSLTKAKSTPIAINVNASDKGKHFSEEVSEETLSFSELWA 123

Query: 135 GPTYSNSPPPSSLPIPKFSV-AKRTTSLELPRSAPEFEMHHPSAKSAPPSPTREQNFSSR 194
           GP YSNSPPPSSLPIPKFSV  KRT SLELP SAPE EM HP AKSAPPSPTRE N S R
Sbjct: 124 GPAYSNSPPPSSLPIPKFSVRPKRTVSLELPGSAPEIEM-HPMAKSAPPSPTREHNPSKR 183

Query: 195 FFFHSADSATKTLR 207
             F SA+ ATKTL+
Sbjct: 184 DLFLSAECATKTLK 196

[Close]

BLAST of Lsi05G009420.1 vs. NCBI nr
Match: KGN47907.1 (hypothetical protein Csa_004001 [Cucumis sativus])

HSP 1 Score: 369.0 bits (946), Expect = 2.8e-98
Identity = 183/202 (90.59%), Postives = 192/202 (95.05%), Query Frame = 0


Query: 15  VVVIEQHRNQYYDRVKPHGPARFGSLPSRDFRGMNCRSFQSGAGILPTPLKACTSETKHV 74
           VVVIEQHRNQYYDRVKPHGPARFGSL SRDFRGMNCRSFQSGAGILPTPLKAC SET+H 
Sbjct: 4   VVVIEQHRNQYYDRVKPHGPARFGSLRSRDFRGMNCRSFQSGAGILPTPLKACNSETEHF 63

Query: 75  YPSSPKTPPTCLSSNSENGKQLTTVRSAPIPIKPKFSNKNSSFHEEFYDRSFSFSELWAG 134
           YP SPKTPP CL+SNSEN KQL T+RSAPIPIKPK SN++++FHEEFYDRSFSFSELWAG
Sbjct: 64  YP-SPKTPPPCLTSNSENRKQLATMRSAPIPIKPKSSNQSNAFHEEFYDRSFSFSELWAG 123

Query: 135 PTYSNSPPPSSLPIPKFSVAKRTTSLELPRSAPEFEMHHPSAKSAPPSPTREQNFSSRFF 194
           PTYSNSPPPSSLPIPKFSVAKRTTSLEL RSAPEFEMHHPSAKSAPPSPTR+QNFS+RFF
Sbjct: 124 PTYSNSPPPSSLPIPKFSVAKRTTSLELARSAPEFEMHHPSAKSAPPSPTRDQNFSARFF 183

Query: 195 FHSADSATKTLRRILNLDVDNE 217
           FHSADSATKTLRRILNLDV NE
Sbjct: 184 FHSADSATKTLRRILNLDVANE 204

[Close]

BLAST of Lsi05G009420.1 vs. NCBI nr
Match: KAG6571464.1 (hypothetical protein SDJN03_28192, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 360.1 bits (923), Expect = 1.3e-95
Identity = 177/202 (87.62%), Postives = 186/202 (92.08%), Query Frame = 0


Query: 15  VVVIEQHRNQYYDRVKPHGPARFGSLPSRDFRGMNCRSFQSGAGILPTPLKACTSETKHV 74
           V+V+EQHRNQYY R++PHGPARF S PSRDFRGMNCRSFQSGAGILPTPLKAC S TKHV
Sbjct: 4   VIVVEQHRNQYYGRIEPHGPARFESPPSRDFRGMNCRSFQSGAGILPTPLKACISGTKHV 63

Query: 75  YPSSPKTPPTCLSSNSENGKQLTTVRSAPIPIKPKFSNKNSSFHEEFYDRSFSFSELWAG 134
           YPSSPKTPPTCLSSN+ NGKQL +V+SAPIPI  KFSNKNS+ HEEFYDR+FSFSELWAG
Sbjct: 64  YPSSPKTPPTCLSSNAGNGKQLASVKSAPIPITAKFSNKNSALHEEFYDRNFSFSELWAG 123

Query: 135 PTYSNSPPPSSLPIPKFSVAKRTTSLELPRSAPEFEMHHPSAKSAPPSPTREQNFSSRFF 194
           PTYSNSPPPSSLPIPKFSVAKRT SLELPRSAPEFEMH PSAKSAPPSPTRE   SSRF 
Sbjct: 124 PTYSNSPPPSSLPIPKFSVAKRTKSLELPRSAPEFEMHRPSAKSAPPSPTRELESSSRFI 183

Query: 195 FHSADSATKTLRRILNLDVDNE 217
           FHSADSATKTLRRILNLDVDNE
Sbjct: 184 FHSADSATKTLRRILNLDVDNE 205

[Close]

BLAST of Lsi05G009420.1 vs. NCBI nr
Match: XP_016900729.1 (PREDICTED: uncharacterized protein LOC107990294 [Cucumis melo])

HSP 1 Score: 360.1 bits (923), Expect = 1.3e-95
Identity = 180/202 (89.11%), Postives = 189/202 (93.56%), Query Frame = 0


Query: 15  VVVIEQHRNQYYDRVKPHGPARFGSLPSRDFRGMNCRSFQSGAGILPTPLKACTSETKHV 74
           VVVIEQHRNQYYDRVKPHGPARFGSL SRDF GMNCRSFQSGAGILPTPLKACTSET+H 
Sbjct: 4   VVVIEQHRNQYYDRVKPHGPARFGSLRSRDFGGMNCRSFQSGAGILPTPLKACTSETEHF 63

Query: 75  YPSSPKTPPTCLSSNSENGKQLTTVRSAPIPIKPKFSNKNSSFHEEFYDRSFSFSELWAG 134
           YP SPKTPP  L+SNSEN KQL T RSAPI IKPK SN+++ FHEEFYDRSFSFSELWAG
Sbjct: 64  YP-SPKTPPPFLTSNSENRKQLATARSAPISIKPKLSNQSNVFHEEFYDRSFSFSELWAG 123

Query: 135 PTYSNSPPPSSLPIPKFSVAKRTTSLELPRSAPEFEMHHPSAKSAPPSPTREQNFSSRFF 194
           PTYSNSPPPSSLPIPKFSVAKRTTSLEL RSAPEFEMHHPSAKSAPPSPTR+Q+FS+R+F
Sbjct: 124 PTYSNSPPPSSLPIPKFSVAKRTTSLELARSAPEFEMHHPSAKSAPPSPTRDQDFSARYF 183

Query: 195 FHSADSATKTLRRILNLDVDNE 217
           FHSADSATKTLRRILNLDVDNE
Sbjct: 184 FHSADSATKTLRRILNLDVDNE 204

[Close]

BLAST of Lsi05G009420.1 vs. NCBI nr
Match: KAG6606421.1 (hypothetical protein SDJN03_03738, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036359.1 hypothetical protein SDJN02_03164, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 320.5 bits (820), Expect = 1.1e-83
Identity = 163/202 (80.69%), Postives = 173/202 (85.64%), Query Frame = 0


Query: 15  VVVIEQHRNQYYDRVKPHGPARFGSLPSRDFRGMNCRSFQSGAGILPTPLKACTSETKHV 74
           VVV +QHRNQYY        A FGS PSRDFRG+NCRSFQSGAGILPTP KA TSET+H 
Sbjct: 5   VVVEQQHRNQYYG-------APFGSFPSRDFRGVNCRSFQSGAGILPTPSKASTSETEHF 64

Query: 75  YPSSPKTPPTCLSSNSENGKQLTTVRSAPIPIKPKFSNKNSSFHEEFYDRSFSFSELWAG 134
           YPSSPKTP TCLSSNS N K   TV +APIPIKPKF N NS  HEEFYD SFSFSELWAG
Sbjct: 65  YPSSPKTPLTCLSSNSGNAKSGATVPTAPIPIKPKFLNNNSVLHEEFYDPSFSFSELWAG 124

Query: 135 PTYSNSPPPSSLPIPKFSVAKRTTSLELPRSAPEFEMHHPSAKSAPPSPTREQNFSSRFF 194
           PTYSNSPPPSSLPIPKFSVAKRTTS E+PRSAPEF++HHPSAKSAPPSPTR+QNFS RFF
Sbjct: 125 PTYSNSPPPSSLPIPKFSVAKRTTSQEIPRSAPEFDLHHPSAKSAPPSPTRDQNFSPRFF 184

Query: 195 FHSADSATKTLRRILNLDVDNE 217
           FH+ DSATKTLRRIL+LDVDNE
Sbjct: 185 FHNDDSATKTLRRILHLDVDNE 199

[Close]

BLAST of Lsi05G009420.1 vs. NCBI nr
Match: KAG7011227.1 (hypothetical protein SDJN02_26130, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 315.8 bits (808), Expect = 2.8e-82
Identity = 154/178 (86.52%), Postives = 163/178 (91.57%), Query Frame = 0


Query: 15  VVVIEQHRNQYYDRVKPHGPARFGSLPSRDFRGMNCRSFQSGAGILPTPLKACTSETKHV 74
           V+V+EQHRNQYY R++PHGPARF S PSRDFRGMNCRSFQSGAGILPTPLKAC S TKHV
Sbjct: 4   VIVVEQHRNQYYGRIEPHGPARFESPPSRDFRGMNCRSFQSGAGILPTPLKACISGTKHV 63

Query: 75  YPSSPKTPPTCLSSNSENGKQLTTVRSAPIPIKPKFSNKNSSFHEEFYDRSFSFSELWAG 134
           YPSSPKTPPTCLSSN+ NGKQL +V+SAPIPI  KFSNKNS+ HEEFYDR+FSFSELWAG
Sbjct: 64  YPSSPKTPPTCLSSNAGNGKQLASVKSAPIPITAKFSNKNSALHEEFYDRNFSFSELWAG 123

Query: 135 PTYSNSPPPSSLPIPKFSVAKRTTSLELPRSAPEFEMHHPSAKSAPPSPTREQNFSSR 193
           PTYSNSPPPSSLPIPKFSVAKRT SLELPRSAPEFEMH PSAKSAPPSPTRE   SSR
Sbjct: 124 PTYSNSPPPSSLPIPKFSVAKRTKSLELPRSAPEFEMHRPSAKSAPPSPTRELESSSR 181

[Close]

BLAST of Lsi05G009420.1 vs. TAIR 10
Match: AT4G02715.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 131.7 bits (330), Expect = 7.0e-31
Identity = 95/207 (45.89%), Postives = 126/207 (60.87%), Query Frame = 0


Query: 15  VVVIEQHRNQYYDRVKPHGPARFGSLPSRDFRGMNCRSFQSGAGILPTPLK-ACTSETKH 74
           ++V  +HR+QYY + K  G  RF S PS+ FR +NCR+FQSG G+LP P + + T  TK 
Sbjct: 4   LIVAVEHRDQYYGK-KSLGHDRFRSAPSKTFRQINCRTFQSGVGLLPRPKRTSSTPLTKG 63

Query: 75  VYP--SSPKTPPTCLSSNSENGKQLTTVRSAPIPIKPKFSNKNSSFHEEFYD--RSFSFS 134
                 SP++P + L     +   + + R++PIPI     ++      EF D  RS S+S
Sbjct: 64  ALSQVQSPRSPKSVLP--VFHHPSVDSGRTSPIPIANCRGSQIRRCSSEFVDKRRSLSYS 123

Query: 135 ELWAGPTYSNSPPPSSLPIPKFSV-AKRTTSLELPRSAPEFEMH-HPSAKSAPPSPTREQ 194
           ELWAGPTYSNSPPP+S+PIPKFS+  KRT SL  P  AP+  +     AKSAP SPT   
Sbjct: 124 ELWAGPTYSNSPPPASVPIPKFSLQQKRTVSLTFP--APDSAVDIREVAKSAPVSPTS-- 183

Query: 195 NFSSRFFFHSADSATKTLRRILNLDVD 215
             S    F S  SAT TLRR+LNL+++
Sbjct: 184 --SGDNPFRSTVSATMTLRRMLNLELE 201

The following BLAST results are available for this feature:

BLAST of Lsi05G009420.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi05G009420.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHP6	1.3e-98	90.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G410620 PE=4 SV=1	[more]
A0A1S4DXL6	6.3e-96	89.11	uncharacterized protein LOC107990294 OS=Cucumis melo OX=3656 GN=LOC107990294 PE=...	[more]
A0A5A7UUU2	4.7e-75	88.96	Nascent polypeptide-associated complex subunit alpha, muscle-specific form OS=Cu...	[more]
A0A5D3CPQ8	4.7e-75	88.96	Nascent polypeptide-associated complex subunit alpha, muscle-specific form OS=Cu...	[more]
A0A6P4A757	2.6e-57	65.46	uncharacterized protein LOC107425950 OS=Ziziphus jujuba OX=326968 GN=LOC10742595...	[more]

BLAST of Lsi05G009420.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47907.1	2.8e-98	90.59	hypothetical protein Csa_004001 [Cucumis sativus]	[more]
KAG6571464.1	1.3e-95	87.62	hypothetical protein SDJN03_28192, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_016900729.1	1.3e-95	89.11	PREDICTED: uncharacterized protein LOC107990294 [Cucumis melo]	[more]
KAG6606421.1	1.1e-83	80.69	hypothetical protein SDJN03_03738, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7011227.1	2.8e-82	86.52	hypothetical protein SDJN02_26130, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Lsi05G009420.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02715.1	7.0e-31	45.89	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF15365	PNRC	coord: 132..151 e-value: 9.0E-7 score: 28.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..188
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..92
None	No IPR available	PANTHER	PTHR35306	BNAA03G57290D PROTEIN	coord: 15..215
None	No IPR available	PANTHER	PTHR35306:SF1	BNAA03G57290D PROTEIN	coord: 15..215

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi05G009420	Lsi05G009420	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi05G009420.1.exon.1	Lsi05G009420.1.exon.1	exon
Lsi05G009420.1.exon.2	Lsi05G009420.1.exon.2	exon
Lsi05G009420.1.exon.3	Lsi05G009420.1.exon.3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi05G009420.1.CDS.1	Lsi05G009420.1.CDS.1	CDS
Lsi05G009420.1.CDS.2	Lsi05G009420.1.CDS.2	CDS
Lsi05G009420.1.CDS.3	Lsi05G009420.1.CDS.3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi05G009420.1	Lsi05G009420.1-protein	polypeptide