Lsi05G005500.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTTTTGCATTTGGGTTTCGTTTCACAAACTGATCGAAGAGATTTCTGCCTCTGAGTAAGTGAACAATATAAAGCTCACTTACAATTTTTTATTTGTTCTGTGCAGGGATGTTTCAAACTGTGAATCCTGATTTCTTATTGTTTTCTATGCTTTTGAAACTGATCTCTGATTATTGACTGAATATTTGAGATAATTGCAGATGACCCTTATGCTGAGGATTTTCCTTTTTTAAGATATTGGAATTTCTTTGAACAATGTCTGCTTATGGGAATGAAATGGAGCGCCAGTTATCTACTAGGGGAAGTTCTGAGAATTCAGGTGTGGAATTTAATACATCCTTCTCTTTCCCTTATGGTCTCTTGTCATGAATATGAATCAGTTTATTGAAAGAAAAGCATGTTTTGATTTGTTTCACAGAAGTAACAAGAGAATCCAAAAACTTCCATATATGGAATGTTTGATTTCATGAGGATTTGTTATTGCCTTTACCACTTTGCTTTGCCATTTCCTTTATTTTTATATCAAAGATTGCTAGAAACATAGTTGAGAAGTTAGATAAGTTCTTTCAGGCTGTTTTATGGTGAGTTTTCCTTTTTGTTAGTAATAACTACTAAGACAGATACAGGATGCAGTTTTCTGATGTTGAGGATTCTTTTTTGGCTAATTATTGTTAGAGAAGAAATTCCATAAACAAGAAAAAAGGCAGAAAATAATAGAAATATTATACATTTTTCAACTGAGAAACATATGAACTGATGTAAAGATATAGAAAGTCCTGGATGAGTTATCATCTAGAAGAAAGAATAGAGGAGATTGCATAAAGTATTTGAATTAGCAATTAGCATTAATGGAAAAGAATTGATAATCACAAAATATCTGCTAACTAAGGGCCCGTTTGATAACGTTCCCGTTTCTGTTTCTCATTTTTTAAGAAACTGACTTGTTTGATAATTGTTTCCGTTTCTTGTTTCTTGAATTTGAGAAACGTTTCTTAAAATGTGGCTAAATTTGAGAAACTAATAGTTTCTCCTTGTTCTATTTCTATTTTATACTATATTATTTCTTTTATGTATTAAAACTTATTCTTGACTTGTTGGTACTTAAGCACACCTATTATACCTTTTCACCTCTTGATTGTGTGTTCAACTCAAATGGACATTTTTATTTCGTTTTTTTTCCTTTTATATTTTTTTTTTATATTTTCTTTATTAATTTTGTTGTTTACAAAATTAATTCTACTACATTTATATATTATTTTAATTTTCAATATATTTCTTAATTTTTTAACATTTAAAATTTCAACTAATGGACACTTTAATTTTTTTTTGTTTTATATTTCCATCTTTTATATTTTATTTATTTTATATATTAATTTTTTTATTTACAAAAATAATTTGGGGAATTTTTAAAAATATAAAAATAAGGGAAACTATTTACACAAAATAGCAAAATTTTTAGATATTTGTGATAGACACTGATAGAAGCTGATAGAAGTCTATCAATGTCTATCAGTGATTTTTTTTGCTATTTTCTGTAAATAGTTTGACATTTTTTCTATTTATGAAAATTTTCCAAATAATTTTTCTATATTTATCTTTTATTTTAATTTTGAATTTTAAAATTCTCCAATAATTAGATTTATATATTATTTTAATTTTTTAATTTGTATATTAATTTGTTTTTATATTTCAACTTTTGAGTATTAAAATTTGCAATATGCATGCTTATATATTATTTTAATTATAATATTTTTAGTATATATGACATCAAGTAGAATTTTCCATTATATAAATTTTGTTGACTTTTTTTTTGCTGACTAAGACATTCATTTAGCTTTATTTTAATGTTTTACAATCATAAAATATATATAATAATATAATTAAGTTCGATTTGACTCAACATCACTTAAGACAAATGATTCGAATTAGAGATGACAACGCCTATCAAATTTGGGCAACATATATGAAGGATAGGATACAACTTTGTTATTATATTTAGTTGTCATCGAGACTTACTTGTATTAGATGACACAAACTTTTGATGATATCTTTTTCGATATTTAATGTATGACATATATTCTTTTTTTATATTATATAGTTACAAAAAAGAAAAAAAAGAAACAAGAAATAGTTATCAAACAAGTTTCTATTTCTGTTTTTTTTTTTTAAGAAACAGGAAACATAAATAGTTATCAAGCATGTTCTTGTTTCTTGTTCTCAAAAAAGAAGAAACATGAAACAAGAAACAGGGAACGAGAAACAAGAAACAGGAAACGAGAACGTTATCAAACGGGCCCTAATATGTCACTTTTCTTATAACTTTTTTGACTGAATTCTGCAGTGTATACTATCTACTATCTAGTCAATACAATGAGCAGTAAAATTCTGCAGTGTATGACTTAGATTTATGAATCTATGATGAGGAAAACAAAAAAATGAATGAAAACACTATATAAAAACATCTTCCCAAACAACTTTTCTGGAGTAGGATTTAGGAAACATTTTGTTCAGATATAATTTTTGAATACTCATTGAAACAAGCCTTTACCTATTATCATTAAGAGCCTGCAATTTGAAAACGAGCGAGACTACTCTAATAGGAGATGTGCGATGGCATCTTCGTTGTCGTTCTTATGGTAGTCAGCATTGCAGTTATTAGATTATTGACATATAGCAATGTGATGGAAGAACTTTTACTGGTATTTGAGGCTCATTTGAACTGAGAATAGTGATTGTTATCCTTTTAACGAGGCAGATATGGGAAGCCGGTATATCATAGAGTCGGAATTCTACATGATGACACCTTTAACAGTAACGATTTTCGTTGCTGCTCTAGTTACTTTTGGAGTTATTGGTCTCATTGACTGTAATATTGCAATATTGTCAATACAGAAGTGGAGGAGTTGTTGAGATTCAGAAATCAAGTGTTGATTATGACTATTGCAAGGCTCTATCTGAACATTTGGAGCTAAATATCTTGGAAACAGATGGGATACCTTCATTTTGCAAGGATTTTTCCATTTAATACATCAAAAGCAGGCAATATGAAAGAGATTTGGATTCTACGCTGTAGGTGGTCGACAAGTATTTCTGTAGTGCTGCCGAAGTAGGCAACGGTCGAGATATCGTGCTGATGGACATAGATGACTTTCTTTTCACTAACCGTGATTACAACAACCTACTAATCTCTAGGTACTTTCCTGATATCTATGTAGTGTTCTTTCTCTCTGTTCTATCGTTGATAATTATCATTATTATTAGTCATGATAACACCAAGTTTTATTTCATTCTTTTACTAGGTTGGTTTCCCATAGCATTATATTTCATCTTCATACTTTTTGAAAACTCAAGATCCTTTTCCACCTTGAAATTAGATTTTCAATGAAGTTTACCTTAAACCATGAGAAATGCAATATGTTAGAACATTATGTATGTGAATACCAATATTTAGTGTTTGTTGTATTACAGTCTTCTGCTCCAGTTCTTGGTTGAGTAACATAAAAATAAATTCTCTCGATCAATTTAATTCTCGGTGCAGTAGTTGTGTCGACCAGGCGAAGAGATTGAAGCAAAACTTTCTTCTAAAACTATACAAGAAACTCAGATCTTGCAGATGGCCTCTAACCTTAATATCAAGAAAGTTGGAAGTTCATAGGAATGGCACTATTGAACATCTTGGTTGGCTACAGTTGATTATGAGGTACCTTCAATATATCCATTTTATTAGCAGGCTTTACAATAAAAAGTTACCTTATTTTAGGATGTTATTGAAATCCTTTTCCCTCTTCCCCTTTTAATTCGGATCAAGGTGCTCTGTTTCATATCAGATCAAAACTATTTCTCAAACAAAACTTGTTCAACTAGTAGGCAAATCCTGGAAATATTCAACAAGACTAAGTTTTTGATAGAATCCAAATATATTAAAATATAAATAATAACTGAATTACAAGATGAACTAAGCATTGAGGTACTTGGACCATCCCTCTTGAGATTGCTCTCAAGCCCTAAATCACTCACTAAAACGTTGTCCATTCCCCTTCCTTTTATTTATAACCAAATTCCATAACAAACTCTCTAACTAGTTATGAACTTACTCTTCTAATATCCTTGAATACCCTAATAGCCTTCCTATTAATTTTTTAGGGTTTTCCCATTGGAAAGTGAAAGAGATATAATGCAATTGTCTATCATGCATGTTGTTTTTCTATCTGTGATATAATTGGAGCCTAGCCTTTTTTTCTGCCTATGTAGGCATAATTTTTATGTTCTATGTACAGATTTTGTCTGTCCTATGGCAATTATGCATATTTAAGAACATTTTGTTAGAAAAATCTCGCAGAATGGATGATGAAATGCAGATCAATAATCAGAAATACTTCAGTCAGCAACAAGCAGCATTGCAGAATGAAAGATTCCGCGTCGTAGGTGTGATGAGCAGCCACATGGATGCCTTGTCAGCACCATCCATTGGAACTCGTATTTATAAGCTTCCAAAACACATGTACTTAAATATCAATCATCAAAAATTGAGGAAACACACAAAGTTAGATAGTGATATATTCTGGAAATTTGTTGTCATGTGAGCCATTCCAAGATATTGCACAGTATAAGTCAATTTAGGCTTCTCCACAGCTGTTTGAGTTTCACACAAGTTCTCTTATGTAAAATAGTAAAAAAGAAGCACATACAATCAGAGAAGTTGCTATGGATTATCATGTCCATGCCATTCAATGGAGACAATCAAGAATGTAAGGAGACAGTTTCTGTTCATTTACCAGATTATTGTATATAATTTGATTGTCTTGTGATGAGAGGGGCATTGCAAGTAAAGTACATTTCACTCCGATCCTACATTGCTCGTCTTCAACGGTATCGACACCAACAGCCAGGCGTCAGCAGCAACTCTACACATTATTTGTTATACTTTTTCCTCTTCTTCATGTTCATACAATTTGAAACAATTTTTTTGATTGACTTTTTATGTTATTCAAATTCCTTTTGGTTTTTACTTTCCTAGTTCCCTCTCTCAAGACCAGTGTTTCAATTTTGTTTTCTTTCAATTATTCATTC ATGGATATGGGAAGCCGGTATATCATAGAGTCGGAATTCTACATGATGACACCTTTAACAGTAACGATTTTCGTTGCTGCTCTAGTGGTCGACAAGTATTTCTGTAGTGCTGCCGAAGTAGGCAACGGTCGAGATATCGTGCTGATGGACATAGATGACTTTCTTTTCACTAACCGTGATTACAACAACCTACTAATCTCTAGGTACTTTCCTGATATCTATGTAGTGTTCTTTCTCTCTGTTCTATCGTTGATAATTATCATTATTATTAGTCATGATAACACCAAGTTTTATTTCATTCTTTTACTAGTCTTCTGCTCCAGTTCTTGGTTGAGTAACATAAAAATAAATTCTCTCGATCAATTTAATTCTCGGTGCAGTAGTTGTGTCGACCAGGCGAAGAGATTGAAGCAAAACTTTCTTCTAAAACTATACAAGAAACTCAGATCTTGCAGATGGCCTCTAACCTTAATATCAAGAAAGTTGGAAGTTCATAGGAATGGCACTATTGAACATCTTGGTTGGCTACAGTTGATTATGAGAATGGATGATGAAATGCAGATCAATAATCAGAAATACTTCAGTCAGCAACAAGCAGCATTGCAGAATGAAAGATTCCGCGTCGTAGGTGTGATGAGCAGCCACATGGATGCCTTGTCAGCACCATCCATTGGAACTCGTATTTATAAGCTTCCAAAACACATGTACTTAAATATCAATCATCAAAAATTGAGGAAACACACAAAGTTAGATAGTGATATATTCTGGAAATTTGTTGTCATGTGAGCCATTCCAAGATATTGCACAGTATAAGTCAATTTAGGCTTCTCCACAGCTGTTTGAGTTTCACACAAGTTCTCTTATGTAAAATAGTAAAAAAGAAGCACATACAATCAGAGAAGTTGCTATGGATTATCATGTCCATGCCATTCAATGGAGACAATCAAGAATGTAAGGAGACAGTTTCTGTTCATTTACCAGATTATTGTATATAATTTGATTGTCTTGTGATGAGAGGGGCATTGCAAGTAAAGTACATTTCACTCCGATCCTACATTGCTCGTCTTCAACGGTATCGACACCAACAGCCAGGCGTCAGCAGCAACTCTACACATTATTTGTTATACTTTTTCCTCTTCTTCATGTTCATACAATTTGAAACAATTTTTTTGATTGACTTTTTATGTTATTCAAATTCCTTTTGGTTTTTACTTTCCTAGTTCCCTCTCTCAAGACCAGTGTTTCAATTTTGTTTTCTTTCAATTATTCATTC ATGGATATGGGAAGCCGGTATATCATAGAGTCGGAATTCTACATGATGACACCTTTAACAGTAACGATTTTCGTTGCTGCTCTAGTGGTCGACAAGTATTTCTGTAGTGCTGCCGAAGTAGGCAACGGTCGAGATATCGTGCTGATGGACATAGATGACTTTCTTTTCACTAACCGTGATTACAACAACCTACTAATCTCTAGGTACTTTCCTGATATCTATGTAGTGTTCTTTCTCTCTGTTCTATCGTTGATAATTATCATTATTATTAGTCATGATAACACCAAGTTTTATTTCATTCTTTTACTAGTCTTCTGCTCCAGTTCTTGGTTGAGTAACATAAAAATAAATTCTCTCGATCAATTTAATTCTCGGTGCAGTAGTTGTGTCGACCAGGCGAAGAGATTGAAGCAAAACTTTCTTCTAAAACTATACAAGAAACTCAGATCTTGCAGATGGCCTCTAACCTTAATATCAAGAAAGTTGGAAGTTCATAGGAATGGCACTATTGAACATCTTGGTTGGCTACAGTTGATTATGAGAATGGATGATGAAATGCAGATCAATAATCAGAAATACTTCAGTCAGCAACAAGCAGCATTGCAGAATGAAAGATTCCGCGTCGTAGGTGTGATGAGCAGCCACATGGATGCCTTGTCAGCACCATCCATTGGAACTCGTATTTATAAGCTTCCAAAACACATGTACTTAAATATCAATCATCAAAAATTGAGGAAACACACAAAGTTAGATAGTGATATATTCTGGAAATTTGTTGTCATGTGA MDMGSRYIIESEFYMMTPLTVTIFVAALVVDKYFCSAAEVGNGRDIVLMDIDDFLFTNRDYNNLLISRYFPDIYVVFFLSVLSLIIIIIISHDNTKFYFILLLVFCSSSWLSNIKINSLDQFNSRCSSCVDQAKRLKQNFLLKLYKKLRSCRWPLTLISRKLEVHRNGTIEHLGWLQLIMRMDDEMQINNQKYFSQQQAALQNERFRVVGVMSSHMDALSAPSIGTRIYKLPKHMYLNINHQKLRKHTKLDSDIFWKFVVM Homology
BLAST of Lsi05G005500.1 vs. ExPASy Swiss-Prot
Match: O04195 (Uncharacterized protein At2g39920 OS=Arabidopsis thaliana OX=3702 GN=At2g39920 PE=2 SV=2) HSP 1 Score: 55.5 bits (132), Expect = 1.1e-06 Identity = 44/128 (34.38%), Postives = 64/128 (50.00%), Query Frame = 0
BLAST of Lsi05G005500.1 vs. ExPASy Swiss-Prot
Match: P27061 (Acid phosphatase 1 OS=Solanum lycopersicum OX=4081 GN=APS1 PE=2 SV=1) HSP 1 Score: 49.7 bits (117), Expect = 5.9e-05 Identity = 32/101 (31.68%), Postives = 53/101 (52.48%), Query Frame = 0
BLAST of Lsi05G005500.1 vs. ExPASy TrEMBL
Match: A0A6J1ISF3 (uncharacterized protein At2g39920 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478272 PE=4 SV=1) HSP 1 Score: 219.5 bits (558), Expect = 1.6e-53 Identity = 123/225 (54.67%), Postives = 142/225 (63.11%), Query Frame = 0
BLAST of Lsi05G005500.1 vs. ExPASy TrEMBL
Match: A0A0A0KLV1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G198200 PE=4 SV=1) HSP 1 Score: 218.8 bits (556), Expect = 2.7e-53 Identity = 148/339 (43.66%), Postives = 163/339 (48.08%), Query Frame = 0
BLAST of Lsi05G005500.1 vs. ExPASy TrEMBL
Match: A0A6J1IKM3 (uncharacterized protein At2g39920 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478272 PE=4 SV=1) HSP 1 Score: 217.6 bits (553), Expect = 6.1e-53 Identity = 122/225 (54.22%), Postives = 141/225 (62.67%), Query Frame = 0
BLAST of Lsi05G005500.1 vs. ExPASy TrEMBL
Match: A0A6J1GZB6 (uncharacterized protein At2g39920 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458511 PE=4 SV=1) HSP 1 Score: 216.1 bits (549), Expect = 1.8e-52 Identity = 122/225 (54.22%), Postives = 140/225 (62.22%), Query Frame = 0
BLAST of Lsi05G005500.1 vs. ExPASy TrEMBL
Match: A0A5A7T1U0 (Acid_phosphat_B domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold85G00910 PE=4 SV=1) HSP 1 Score: 215.3 bits (547), Expect = 3.0e-52 Identity = 146/325 (44.92%), Postives = 156/325 (48.00%), Query Frame = 0
BLAST of Lsi05G005500.1 vs. NCBI nr
Match: XP_038891286.1 (uncharacterized protein At2g39920 isoform X1 [Benincasa hispida] >XP_038891287.1 uncharacterized protein At2g39920 isoform X1 [Benincasa hispida] >XP_038891288.1 uncharacterized protein At2g39920 isoform X1 [Benincasa hispida]) HSP 1 Score: 250.0 bits (637), Expect = 2.3e-62 Identity = 161/338 (47.63%), Postives = 174/338 (51.48%), Query Frame = 0
BLAST of Lsi05G005500.1 vs. NCBI nr
Match: XP_038891289.1 (uncharacterized protein At2g39920 isoform X2 [Benincasa hispida]) HSP 1 Score: 247.7 bits (631), Expect = 1.1e-61 Identity = 160/338 (47.34%), Postives = 173/338 (51.18%), Query Frame = 0
BLAST of Lsi05G005500.1 vs. NCBI nr
Match: XP_022978228.1 (uncharacterized protein At2g39920 isoform X1 [Cucurbita maxima] >XP_022978236.1 uncharacterized protein At2g39920 isoform X1 [Cucurbita maxima] >XP_022978244.1 uncharacterized protein At2g39920 isoform X1 [Cucurbita maxima]) HSP 1 Score: 219.5 bits (558), Expect = 3.3e-53 Identity = 123/225 (54.67%), Postives = 142/225 (63.11%), Query Frame = 0
BLAST of Lsi05G005500.1 vs. NCBI nr
Match: XP_004150231.1 (uncharacterized protein At2g39920 [Cucumis sativus] >XP_031741861.1 uncharacterized protein At2g39920 [Cucumis sativus] >KGN50630.1 hypothetical protein Csa_021434 [Cucumis sativus]) HSP 1 Score: 218.8 bits (556), Expect = 5.6e-53 Identity = 148/339 (43.66%), Postives = 163/339 (48.08%), Query Frame = 0
BLAST of Lsi05G005500.1 vs. NCBI nr
Match: XP_022978252.1 (uncharacterized protein At2g39920 isoform X2 [Cucurbita maxima]) HSP 1 Score: 217.6 bits (553), Expect = 1.3e-52 Identity = 122/225 (54.22%), Postives = 141/225 (62.67%), Query Frame = 0
BLAST of Lsi05G005500.1 vs. TAIR 10
Match: AT2G39920.1 (HAD superfamily, subfamily IIIB acid phosphatase ) HSP 1 Score: 55.5 bits (132), Expect = 7.7e-08 Identity = 44/128 (34.38%), Postives = 64/128 (50.00%), Query Frame = 0
BLAST of Lsi05G005500.1 vs. TAIR 10
Match: AT2G39920.3 (HAD superfamily, subfamily IIIB acid phosphatase ) HSP 1 Score: 55.5 bits (132), Expect = 7.7e-08 Identity = 44/128 (34.38%), Postives = 64/128 (50.00%), Query Frame = 0
BLAST of Lsi05G005500.1 vs. TAIR 10
Match: AT2G39920.2 (HAD superfamily, subfamily IIIB acid phosphatase ) HSP 1 Score: 47.4 bits (111), Expect = 2.1e-05 Identity = 72/269 (26.77%), Postives = 113/269 (42.01%), Query Frame = 0
BLAST of Lsi05G005500.1 vs. TAIR 10
Match: AT4G29260.1 (HAD superfamily, subfamily IIIB acid phosphatase ) HSP 1 Score: 43.5 bits (101), Expect = 3.0e-04 Identity = 48/210 (22.86%), Postives = 82/210 (39.05%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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