Lsi04G021070.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G021070.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Protein TPR1-like isoform X1
Location	chr04: 28223244 .. 28225775 (-)
Sequence length	393
RNA-Seq Expression	Lsi04G021070.1
Synteny	Lsi04G021070.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGGAATGCGAAACGGGATTGTTCTTCAACATGGGTTATTTTGAAGAGATGTTGAATTGTTGTGCTTATAATGAAGCTGAAAGCTACCTTTGTGGATTTACTGATATTCATGATAATATTTATTCCACCAAGATTTACTTTGGGATTAGAAAGCTCAAATTCCTTGAAGCACTCTCAGAGTATGTATTAAAAATTCTTGATTATTATTCTTCATTTTCTCTTCGTTTTAATTATAGACCATAGTCCTAATATATGCTTTTGAAATTTAATAGCTTAGGACATCATTAAATTAATTATTAAAATTTTCTGACTTAAGTTATAGAAAGTGCCCCAACTTTCTATTCGGTTTTTAAAAAAAAAATACTTTTTAAGTGAAAACTTTTAAGTGAAAGATTAGTTTGAGATGGAAACGGTTAATGTTGATTTGTTTGAAAAATATCATTTTCGATTTAAAAGTTTGAATAATACTTTTAAATTTTAAAATAAAAAGTAAAAAATACCTATTAGAGACAATAGAAGATGGAATAAAATATGAGGAGGTGTAGATAAACGGTTTTCTTCTATATTATTCTAACACTAATGTCACCTTTTAACCCATTTTTTCAAATGTGGAAAGTATTAATGCAACATTTGAAAGTATATATAATACTCTTTTTTTTAAACAGTGTGCTATTAATTTTCAATATATATAACAATAAGAGTATTTTTAAATTTTTTTTAAAGTTCGATGATATTAATGAAATTTTTTAAACTTCATCAATATTTTTCAAATAAAGTACAGAATTTAAAGGTATTTTTTAATAATTTAGTCAATTTTTTTCTAATGCAGCGGAGAGCGGGAGATTGCTCGGGAAGTGGTTGAAAACGACATCGAAGTTTTCAACTATTATAACCCAGGGTTGGTCCAGCAAGCTTTTGAGCTACTGCAAATGGGGAATTTTATGCAAGTTTTCAAATTCCATATAATTTTTTTTCTCTCCTCGGTTAAATTAGAAATTTGGTCTGGGCATAGTTTAATTTGATAAATAGAGTATTAAAATTTTGATTAAATTCTAAATTTAGTTCATGAACTTCAAAGTTTGTGACAATTTAGTATTTAAATTTTTAAAATTACAAATTTAGTCCATTAACTTTATTTTTTCTTTTTAAGTTCAAGGATATTTTAGACGCAAATTAAAAATTTAAGATTCTAAATTTATATCTATAAATTAATATTCTTTTTTTTTTTTTAATTTGTTAGTTACCACCTATTATTAGACATAAAATTAAAAGTTTTGAGACTTATTAGATAATTTTAAAATTTTAAAGATTAAATAGGTAATGGACTATATTTATAATTTAATCTAAAAAATTGAAATTCATTTCTATAACTTGATTTGCATTAATTTTGCAAAGTTTTCCTAAACCCGTCTTTCACTCAACCAAAATCCACCTATTTTTTCCTTTTCTTTTTTTTTTAACATTTTGATGAATAAAGATACCTATTACCTTTTCTAAGGTAAAATTAGATTCTCCAACAAGGAATTTGTTTATTTAATTTACAAATAACAATAATATGATTTTAAATTTATTAAATTAATTTTTTTTATCACATTCAAAATCATTTTAAAATGTGTCGTTAATCAATCAAACCAATAAAAATTTTTATTTATATGTTTAAACGCTATTTTGCATACTATTAAAATTAGCAAAAATTCAACTCTTTTTTTAAAATCAAATAGAAAATTTAGTGAAATCGAAAAATGTGGTTCGATTCGGTTTCAATTTTTAAAACCGAATTTGAAACGGAACCGAACACATTTTAATTAGTATATACATTATATATTTATTTATTTTAAAAAAGAGCAAAGTCGAATTTAAAATCGAATCGAACCAAACCGTTTTTAATTAATATACATATATATATACACACATGTTTTTTTAAAGTAGCAAAACTGAATTTAAAATCGAAATTGGTTCAGTTCAATTCAGTTTCACATATAAAAATTTTAAAATTTTTTGTTCGGTTCAATTTTACCACCGAATTGAACCATTTCCACCCTTAATTAAAAGCCATGTTACTCTCACGAGTTCAATATGCCAAAACGATCAAGCTCGGTAGTTAAAATATTTATTCCTTCATGTCTCAATTCCCATCCTATATTTCATGAACCAACACAAATCATAAGAGGAAGAATTTGGACTAAATAATTATAGAGCTCAAATTGAAACTATGCTAAAATCATAGGACCAAATTCGAAAATTTGTTTATTATTCTTTTTTTCTTTTTTCATTTTTTAGAAATAGAATATATTATCATCACATATCATAAAATGCAGGTCTCACAAATTACTTTCGAGTTACAAAAATATGAAAGCGGCAAGAAAAGTTGTGATAGAAAATATCAAGAAATGCATTGAAGCCAATCCCCTTCTCCAAGGGAAGCTTTCATTTCCGCCACTCCCAACAACGTTGCAGGCCGTCTACACGGCGGCAATGACCACTAGGGGCAGGCCACCGGCAAGGGCTTGCAGGCGAGATTCCGGCATTTGA

mRNA sequence

CTGGAATGCGAAACGGGATTGTTCTTCAACATGGGTTATTTTGAAGAGATGTTGAATTGTTGTGCTTATAATGAAGCTGAAAGCTACCTTTGTGGATTTACTGATATTCATGATAATATTTATTCCACCAAGATTTACTTTGGGATTAGAAAGCTCAAATTCCTTGAAGCACTCTCAGAGTCTCACAAATTACTTTCGAGTTACAAAAATATGAAAGCGGCAAGAAAAGTTGTGATAGAAAATATCAAGAAATGCATTGAAGCCAATCCCCTTCTCCAAGGGAAGCTTTCATTTCCGCCACTCCCAACAACGTTGCAGGCCGTCTACACGGCGGCAATGACCACTAGGGGCAGGCCACCGGCAAGGGCTTGCAGGCGAGATTCCGGCATTTGA

Coding sequence (CDS)

CTGGAATGCGAAACGGGATTGTTCTTCAACATGGGTTATTTTGAAGAGATGTTGAATTGTTGTGCTTATAATGAAGCTGAAAGCTACCTTTGTGGATTTACTGATATTCATGATAATATTTATTCCACCAAGATTTACTTTGGGATTAGAAAGCTCAAATTCCTTGAAGCACTCTCAGAGTCTCACAAATTACTTTCGAGTTACAAAAATATGAAAGCGGCAAGAAAAGTTGTGATAGAAAATATCAAGAAATGCATTGAAGCCAATCCCCTTCTCCAAGGGAAGCTTTCATTTCCGCCACTCCCAACAACGTTGCAGGCCGTCTACACGGCGGCAATGACCACTAGGGGCAGGCCACCGGCAAGGGCTTGCAGGCGAGATTCCGGCATTTGA

Protein sequence

LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSESHKLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLSFPPLPTTLQAVYTAAMTTRGRPPARACRRDSGI

Homology

[Close]

BLAST of Lsi04G021070.1 vs. ExPASy Swiss-Prot
Match: Q5NBT9 (Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-16
Identity = 53/139 (38.13%), Postives = 70/139 (50.36%), Query Frame = 0


Query: 1   LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALS- 60
           LE E+G FFNM YFEE ++   ++E E YL GFT + DN YS KI+F IRK K+LEAL  
Sbjct: 28  LEQESGFFFNMKYFEEKVHAGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDR 87

Query: 61  -------------------------------------ESHKLLSSYKNMKAARKVVIENI 102
                                                  ++ LS Y + K+AR +++  +
Sbjct: 88  HDRAKAVDILVKDLKVFSTFNEELYKEITQLLTLENFRENEQLSKYGDTKSARSIMLIEL 147

[Close]

BLAST of Lsi04G021070.1 vs. ExPASy Swiss-Prot
Match: Q0WV90 (Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3)

HSP 1 Score: 86.3 bits (212), Expect = 2.8e-16
Identity = 53/142 (37.32%), Postives = 72/142 (50.70%), Query Frame = 0


Query: 1   LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALS- 60
           LE E+G FFNM YFE+ ++   ++E E YL GFT + DN YS KI+F IRK K+LEAL  
Sbjct: 28  LEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDR 87

Query: 61  -------------------------------------ESHKLLSSYKNMKAARKVVIENI 105
                                                  ++ LS Y + K+AR +++  +
Sbjct: 88  HDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVEL 147

[Close]

BLAST of Lsi04G021070.1 vs. ExPASy Swiss-Prot
Match: Q94AI7 (Protein TOPLESS OS=Arabidopsis thaliana OX=3702 GN=TPL PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.8e-16
Identity = 52/139 (37.41%), Postives = 71/139 (51.08%), Query Frame = 0


Query: 1   LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE 60
           LE E+G FFNM YFE+ ++   ++E E YL GFT + DN YS KI+F IRK K+LEAL +
Sbjct: 28  LEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 87

Query: 61  --------------------------------------SHKLLSSYKNMKAARKVVIENI 102
                                                  ++ LS Y + K+AR +++  +
Sbjct: 88  HDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVEL 147

[Close]

BLAST of Lsi04G021070.1 vs. ExPASy Swiss-Prot
Match: Q27GK7 (Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2)

HSP 1 Score: 85.5 bits (210), Expect = 4.8e-16
Identity = 51/139 (36.69%), Postives = 70/139 (50.36%), Query Frame = 0


Query: 1   LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE 60
           LE E+G FFNM YFE+ +    +++ E YL GFT + DN YS KI+F IRK K+LEAL +
Sbjct: 28  LEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 87

Query: 61  --------------------------------------SHKLLSSYKNMKAARKVVIENI 102
                                                  ++ LS Y + K+AR +++  +
Sbjct: 88  KDHAKAVDILVKELKVFSTFNEELFKEITMLLTLTNFRENEQLSKYGDTKSARGIMLGEL 147

[Close]

BLAST of Lsi04G021070.1 vs. ExPASy Swiss-Prot
Match: Q0J7U6 (Protein TOPLESS-RELATED PROTEIN 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR2 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-15
Identity = 49/138 (35.51%), Postives = 70/138 (50.72%), Query Frame = 0


Query: 1   LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALS- 60
           LE E+  +FNM +FE+++    ++E E YL GFT + DN YS KI+F IRK K+LEAL  
Sbjct: 28  LEQESAFYFNMKHFEDLVQGGEWDEVEKYLSGFTKVEDNRYSMKIFFEIRKQKYLEALDR 87

Query: 61  -------------------------------------ESHKLLSSYKNMKAARKVVIENI 101
                                                  ++ LS Y + K+AR +++  +
Sbjct: 88  HDRAKAVEILVKDLKVFASFNEELFKEITQLLTLENFRQNEQLSKYGDTKSARNIMLMEL 147

[Close]

BLAST of Lsi04G021070.1 vs. ExPASy TrEMBL
Match: A0A0A0L5R0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652830 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 9.7e-52
Identity = 110/150 (73.33%), Postives = 117/150 (78.00%), Query Frame = 0


Query: 1   LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE 60
           LECETGLFFNM YFEE+LNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEAL++
Sbjct: 31  LECETGLFFNMTYFEELLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALTD 90

Query: 61  -----------------------SHKLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLS 120
                                  SH LLSSY+NMK ARKVV+ENIKKCIEANPLL+GKLS
Sbjct: 91  GEREVAREVVEKDIEIFDQYNPGSHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLS 150

Query: 121 FPPLPTTLQAVYTAAMTTRGRPPARACRRD 128
           FPPL TTLQA YT AM +R RPPA  CRRD
Sbjct: 151 FPPLSTTLQAFYTEAMASRSRPPA-TCRRD 179

[Close]

BLAST of Lsi04G021070.1 vs. ExPASy TrEMBL
Match: A0A5D3D8T8 (Protein TPR1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00900 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.8e-51
Identity = 111/150 (74.00%), Postives = 116/150 (77.33%), Query Frame = 0


Query: 1   LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE 60
           LECETGLFFNM YFEE+LNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEAL++
Sbjct: 31  LECETGLFFNMTYFEELLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALAD 90

Query: 61  -----------------------SHKLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLS 120
                                  SH LLSSYKNMK ARKVV+ENIKKCIEANPLLQGKLS
Sbjct: 91  GEREVAREVVEKDIEIFDQYNPGSHILLSSYKNMKEARKVVMENIKKCIEANPLLQGKLS 150

Query: 121 FPPLPTTLQAVYTAAMTTRGRPPARACRRD 128
           FPPL TTLQA Y  AM +RGR PA  CRRD
Sbjct: 151 FPPLSTTLQAFYMEAMASRGRAPA-TCRRD 179

[Close]

BLAST of Lsi04G021070.1 vs. ExPASy TrEMBL
Match: E5GCC7 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.8e-51
Identity = 111/150 (74.00%), Postives = 116/150 (77.33%), Query Frame = 0


Query: 1   LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE 60
           LECETGLFFNM YFEE+LNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEAL++
Sbjct: 31  LECETGLFFNMTYFEELLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALAD 90

Query: 61  -----------------------SHKLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLS 120
                                  SH LLSSYKNMK ARKVV+ENIKKCIEANPLLQGKLS
Sbjct: 91  GEREVAREVVEKDIEIFDQYNPGSHILLSSYKNMKEARKVVMENIKKCIEANPLLQGKLS 150

Query: 121 FPPLPTTLQAVYTAAMTTRGRPPARACRRD 128
           FPPL TTLQA Y  AM +RGR PA  CRRD
Sbjct: 151 FPPLSTTLQAFYMEAMASRGRAPA-TCRRD 179

[Close]

BLAST of Lsi04G021070.1 vs. ExPASy TrEMBL
Match: A0A1S3BVS3 (protein TPR1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493786 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.8e-51
Identity = 111/150 (74.00%), Postives = 116/150 (77.33%), Query Frame = 0


Query: 1   LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE 60
           LECETGLFFNM YFEE+LNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEAL++
Sbjct: 31  LECETGLFFNMTYFEELLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALAD 90

Query: 61  -----------------------SHKLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLS 120
                                  SH LLSSYKNMK ARKVV+ENIKKCIEANPLLQGKLS
Sbjct: 91  GEREVAREVVEKDIEIFDQYNPGSHILLSSYKNMKEARKVVMENIKKCIEANPLLQGKLS 150

Query: 121 FPPLPTTLQAVYTAAMTTRGRPPARACRRD 128
           FPPL TTLQA Y  AM +RGR PA  CRRD
Sbjct: 151 FPPLSTTLQAFYMEAMASRGRAPA-TCRRD 179

[Close]

BLAST of Lsi04G021070.1 vs. ExPASy TrEMBL
Match: A0A1S3BUX9 (protein TPR1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493786 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.5e-49
Identity = 111/165 (67.27%), Postives = 116/165 (70.30%), Query Frame = 0


Query: 1   LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE 60
           LECETGLFFNM YFEE+LNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEAL++
Sbjct: 31  LECETGLFFNMTYFEELLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALAD 90

Query: 61  --------------------------------------SHKLLSSYKNMKAARKVVIENI 120
                                                 SH LLSSYKNMK ARKVV+ENI
Sbjct: 91  GEREVAREVVEKDIEIFDQYNPGLVQQAFELLQMDNFMSHILLSSYKNMKEARKVVMENI 150

Query: 121 KKCIEANPLLQGKLSFPPLPTTLQAVYTAAMTTRGRPPARACRRD 128
           KKCIEANPLLQGKLSFPPL TTLQA Y  AM +RGR PA  CRRD
Sbjct: 151 KKCIEANPLLQGKLSFPPLSTTLQAFYMEAMASRGRAPA-TCRRD 194

[Close]

BLAST of Lsi04G021070.1 vs. NCBI nr
Match: XP_038896847.1 (protein TPR1-like [Benincasa hispida])

HSP 1 Score: 212.2 bits (539), Expect = 2.6e-51
Identity = 109/151 (72.19%), Postives = 117/151 (77.48%), Query Frame = 0


Query: 1   LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE 60
           LECETGLFFNM YFEEMLNCCAY+EAE+YLCGFTDIHDNIYS KIYF IRKLKFLEAL++
Sbjct: 31  LECETGLFFNMNYFEEMLNCCAYDEAENYLCGFTDIHDNIYSNKIYFEIRKLKFLEALAD 90

Query: 61  -----------------------SHKLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLS 120
                                  SH LLSSYKN+K ARKVV+ENIKKCI+ANPLLQGKLS
Sbjct: 91  GEREIARKVVENDLEIFNQYNPGSHMLLSSYKNIKEARKVVLENIKKCIQANPLLQGKLS 150

Query: 121 FPPLPTTLQAVYTAAMTTRGRPPARACRRDS 129
           FPPLPTTLQAVYT AM +R   PA ACRRDS
Sbjct: 151 FPPLPTTLQAVYTKAMASRAGGPAAACRRDS 181

[Close]

BLAST of Lsi04G021070.1 vs. NCBI nr
Match: XP_008452906.1 (PREDICTED: protein TPR1-like isoform X2 [Cucumis melo] >ADN34126.1 hypothetical protein [Cucumis melo subsp. melo] >TYK19976.1 protein TPR1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 211.1 bits (536), Expect = 5.8e-51
Identity = 111/150 (74.00%), Postives = 116/150 (77.33%), Query Frame = 0


Query: 1   LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE 60
           LECETGLFFNM YFEE+LNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEAL++
Sbjct: 31  LECETGLFFNMTYFEELLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALAD 90

Query: 61  -----------------------SHKLLSSYKNMKAARKVVIENIKKCIEANPLLQGKLS 120
                                  SH LLSSYKNMK ARKVV+ENIKKCIEANPLLQGKLS
Sbjct: 91  GEREVAREVVEKDIEIFDQYNPGSHILLSSYKNMKEARKVVMENIKKCIEANPLLQGKLS 150

Query: 121 FPPLPTTLQAVYTAAMTTRGRPPARACRRD 128
           FPPL TTLQA Y  AM +RGR PA  CRRD
Sbjct: 151 FPPLSTTLQAFYMEAMASRGRAPA-TCRRD 179

[Close]

BLAST of Lsi04G021070.1 vs. NCBI nr
Match: KAE8649955.1 (hypothetical protein Csa_012980 [Cucumis sativus])

HSP 1 Score: 206.8 bits (525), Expect = 1.1e-49
Identity = 110/165 (66.67%), Postives = 117/165 (70.91%), Query Frame = 0


Query: 1   LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE 60
           LECETGLFFNM YFEE+LNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEAL++
Sbjct: 31  LECETGLFFNMTYFEELLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALTD 90

Query: 61  --------------------------------------SHKLLSSYKNMKAARKVVIENI 120
                                                 SH LLSSY+NMK ARKVV+ENI
Sbjct: 91  GEREVAREVVEKDIEIFDQYNPGLVQQAFELLQMDNFMSHMLLSSYRNMKEARKVVMENI 150

Query: 121 KKCIEANPLLQGKLSFPPLPTTLQAVYTAAMTTRGRPPARACRRD 128
           KKCIEANPLL+GKLSFPPL TTLQA YT AM +R RPPA  CRRD
Sbjct: 151 KKCIEANPLLEGKLSFPPLSTTLQAFYTEAMASRSRPPA-TCRRD 194

[Close]

BLAST of Lsi04G021070.1 vs. NCBI nr
Match: XP_008452905.1 (PREDICTED: protein TPR1-like isoform X1 [Cucumis melo])

HSP 1 Score: 205.3 bits (521), Expect = 3.2e-49
Identity = 111/165 (67.27%), Postives = 116/165 (70.30%), Query Frame = 0


Query: 1   LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE 60
           LECETGLFFNM YFEE+LNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEAL++
Sbjct: 31  LECETGLFFNMTYFEELLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALAD 90

Query: 61  --------------------------------------SHKLLSSYKNMKAARKVVIENI 120
                                                 SH LLSSYKNMK ARKVV+ENI
Sbjct: 91  GEREVAREVVEKDIEIFDQYNPGLVQQAFELLQMDNFMSHILLSSYKNMKEARKVVMENI 150

Query: 121 KKCIEANPLLQGKLSFPPLPTTLQAVYTAAMTTRGRPPARACRRD 128
           KKCIEANPLLQGKLSFPPL TTLQA Y  AM +RGR PA  CRRD
Sbjct: 151 KKCIEANPLLQGKLSFPPLSTTLQAFYMEAMASRGRAPA-TCRRD 194

[Close]

BLAST of Lsi04G021070.1 vs. NCBI nr
Match: KAA0064616.1 (protein TPR1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 198.0 bits (502), Expect = 5.1e-47
Identity = 111/184 (60.33%), Postives = 116/184 (63.04%), Query Frame = 0


Query: 1   LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE 60
           LECETGLFFNM YFEE+LNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEAL++
Sbjct: 31  LECETGLFFNMTYFEELLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALAD 90

Query: 61  ---------------------------------------------------------SHK 120
                                                                    SH 
Sbjct: 91  GEREVAREVVEKDIEIFDQYNPGLVQQAFELLQMDNFMQVFKFLIIFSLPNLKLRIWSHI 150

Query: 121 LLSSYKNMKAARKVVIENIKKCIEANPLLQGKLSFPPLPTTLQAVYTAAMTTRGRPPARA 128
           LLSSYKNMK ARKVV+ENIKKCIEANPLLQGKLSFPPL TTLQA Y  AM +RGR PA  
Sbjct: 151 LLSSYKNMKEARKVVMENIKKCIEANPLLQGKLSFPPLSTTLQAFYMEAMASRGRAPA-T 210

[Close]

BLAST of Lsi04G021070.1 vs. TAIR 10
Match: AT1G80490.1 (TOPLESS-related 1 )

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-17
Identity = 53/142 (37.32%), Postives = 72/142 (50.70%), Query Frame = 0


Query: 1   LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALS- 60
           LE E+G FFNM YFE+ ++   ++E E YL GFT + DN YS KI+F IRK K+LEAL  
Sbjct: 28  LEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDR 87

Query: 61  -------------------------------------ESHKLLSSYKNMKAARKVVIENI 105
                                                  ++ LS Y + K+AR +++  +
Sbjct: 88  HDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVEL 147

[Close]

BLAST of Lsi04G021070.1 vs. TAIR 10
Match: AT1G80490.2 (TOPLESS-related 1 )

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-17
Identity = 53/142 (37.32%), Postives = 72/142 (50.70%), Query Frame = 0


Query: 1   LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALS- 60
           LE E+G FFNM YFE+ ++   ++E E YL GFT + DN YS KI+F IRK K+LEAL  
Sbjct: 28  LEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDR 87

Query: 61  -------------------------------------ESHKLLSSYKNMKAARKVVIENI 105
                                                  ++ LS Y + K+AR +++  +
Sbjct: 88  HDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVEL 147

[Close]

BLAST of Lsi04G021070.1 vs. TAIR 10
Match: AT1G15750.1 (Transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 85.5 bits (210), Expect = 3.4e-17
Identity = 52/139 (37.41%), Postives = 71/139 (51.08%), Query Frame = 0


Query: 1   LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE 60
           LE E+G FFNM YFE+ ++   ++E E YL GFT + DN YS KI+F IRK K+LEAL +
Sbjct: 28  LEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 87

Query: 61  --------------------------------------SHKLLSSYKNMKAARKVVIENI 102
                                                  ++ LS Y + K+AR +++  +
Sbjct: 88  HDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVEL 147

[Close]

BLAST of Lsi04G021070.1 vs. TAIR 10
Match: AT1G15750.2 (Transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 85.5 bits (210), Expect = 3.4e-17
Identity = 52/139 (37.41%), Postives = 71/139 (51.08%), Query Frame = 0


Query: 1   LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE 60
           LE E+G FFNM YFE+ ++   ++E E YL GFT + DN YS KI+F IRK K+LEAL +
Sbjct: 28  LEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 87

Query: 61  --------------------------------------SHKLLSSYKNMKAARKVVIENI 102
                                                  ++ LS Y + K+AR +++  +
Sbjct: 88  HDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVEL 147

[Close]

BLAST of Lsi04G021070.1 vs. TAIR 10
Match: AT1G15750.3 (Transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 85.5 bits (210), Expect = 3.4e-17
Identity = 52/139 (37.41%), Postives = 71/139 (51.08%), Query Frame = 0


Query: 1   LECETGLFFNMGYFEEMLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALSE 60
           LE E+G FFNM YFE+ ++   ++E E YL GFT + DN YS KI+F IRK K+LEAL +
Sbjct: 28  LEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 87

Query: 61  --------------------------------------SHKLLSSYKNMKAARKVVIENI 102
                                                  ++ LS Y + K+AR +++  +
Sbjct: 88  HDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVEL 147

The following BLAST results are available for this feature:

BLAST of Lsi04G021070.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5NBT9	1.7e-16	38.13	Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1	[more]
Q0WV90	2.8e-16	37.32	Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3	[more]
Q94AI7	4.8e-16	37.41	Protein TOPLESS OS=Arabidopsis thaliana OX=3702 GN=TPL PE=1 SV=1	[more]
Q27GK7	4.8e-16	36.69	Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2	[more]
Q0J7U6	1.4e-15	35.51	Protein TOPLESS-RELATED PROTEIN 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TP...	[more]

BLAST of Lsi04G021070.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5R0	9.7e-52	73.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652830 PE=4 SV=1	[more]
A0A5D3D8T8	2.8e-51	74.00	Protein TPR1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
E5GCC7	2.8e-51	74.00	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A1S3BVS3	2.8e-51	74.00	protein TPR1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493786 PE=4 SV=1	[more]
A0A1S3BUX9	1.5e-49	67.27	protein TPR1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493786 PE=4 SV=1	[more]

BLAST of Lsi04G021070.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896847.1	2.6e-51	72.19	protein TPR1-like [Benincasa hispida]	[more]
XP_008452906.1	5.8e-51	74.00	PREDICTED: protein TPR1-like isoform X2 [Cucumis melo] >ADN34126.1 hypothetical ...	[more]
KAE8649955.1	1.1e-49	66.67	hypothetical protein Csa_012980 [Cucumis sativus]	[more]
XP_008452905.1	3.2e-49	67.27	PREDICTED: protein TPR1-like isoform X1 [Cucumis melo]	[more]
KAA0064616.1	5.1e-47	60.33	protein TPR1-like isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of Lsi04G021070.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80490.1	2.0e-17	37.32	TOPLESS-related 1	[more]
AT1G80490.2	2.0e-17	37.32	TOPLESS-related 1	[more]
AT1G15750.1	3.4e-17	37.41	Transducin family protein / WD-40 repeat family protein	[more]
AT1G15750.2	3.4e-17	37.41	Transducin family protein / WD-40 repeat family protein	[more]
AT1G15750.3	3.4e-17	37.41	Transducin family protein / WD-40 repeat family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027728	Topless family	PANTHER	PTHR44083	TOPLESS-RELATED PROTEIN 1-RELATED	coord: 61..102 coord: 2..59
None	No IPR available	PANTHER	PTHR44083:SF26	1 ENHANCER LOCUS 2 PROTEIN, PUTATIVE-RELATED	coord: 61..102 coord: 2..59
IPR006595	CTLH, C-terminal LisH motif	PROSITE	PS50897	CTLH	coord: 8..65 score: 8.091676

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi04G021070	Lsi04G021070	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi04G021070.1.exon.2	Lsi04G021070.1.exon.2	exon
Lsi04G021070.1.exon.1	Lsi04G021070.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi04G021070.1.CDS.2	Lsi04G021070.1.CDS.2	CDS
Lsi04G021070.1.CDS.1	Lsi04G021070.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi04G021070.1	Lsi04G021070.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0048731	system development