Lsi04G017530.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi04G017530.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUPF0307 protein plu4061 isoform X2
Locationchr04: 24785649 .. 24789548 (+)
Sequence length1306
RNA-Seq ExpressionLsi04G017530.1
SyntenyLsi04G017530.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCGAACCCGATTTCATCAATTTATGGTGCCGGTACGCCGCCGTGAACTGATGGACATCAACCATGAGTCATATGGTTCGGGCTCTCCGGCAGTGGCCGATGGTGCAGAAACATTGTCGTGGTTGCGCCGTACATCATTTTCTCTCCTCATCTCCGCCGTGGGTGGCCAAAAGAATCGACTCTCGTCGACTATCTTTAGCTACCGTTCATTCTGCTCGTGGCGAAGTCCAATATGGATCAAAAGGACTCAGATTACCCAAAGCTCCAGCACCAGCCAAATCCCAAGAAGATGAGAGCGTCGATGATGATTCGGATGCTAGAAAGAGCCGCAACCAGCTTAAACGGGAAGCTCGACGAGCCGTCCAATGGGGCATGGATCTTGCGGCCTTCTCCACTCCTCAAATTAAACGCATCCTTAGGTATTTATATCCTCTCGCAACATTATCCGACGACGCCTAATTCTTGTATAATGTTTATCACTGATACTCTTCGGGAAAGGGTTAAGGAGTTTGAGTTTCCATACCGACACTAATGTGAGATTTCTATTACTTTTCTGGGGTGATAGAGTGACGTCTCTCGAGAAAGATATCTTCGACGCAATAATGCTTGTGAAGGTGCTCCTTATTAGTGCTTTGATTTTGTGGTTTGTCGCATCGTTTTGCAATATGGCAACGCGTGAATTTTTTATGTAGCTAAGGTGTTTGATGTTTTGCCGCAGAGGTTTGGGAGTGATGTCAGAGAAGGAAAGCGAAGGCAGTTCAATTACATTGGTAAGCTAATATTTGATATTTTCTTCCGTTGTGAAACGTACATTTGTGCAGTTCGTGTTAATAGTTAGAACCCCATTTGATAATGTAAGAAGATTGAATCTGAAGAACCCTGACATGATGGTTTATCAGGATCAATTGATGAAAATAATGTAAACTTGCTGTCTCTATGGTCCTTGAATATATATGAGCACGAGATCCGGTAAAATGTGAGGCACGAGGTCTTCCTTCGAAAAAACTACTCCTTATAAATCTAAAATGGAAGATTTCAATCTGTCAAATGGTGAATAGAATGGCTTAAATGGTCTGGGCCTTGAATTGATCATCACCCTGGTTAGAGTATTGTGATCAGCTTTGTTTATAGGTTGCCACTTATCCCACTAAACTGCATTCCGGTGACTACTCAACAAGTTGATGTTACTAATTCTAGGAATCTATAGGCTCAATTTAGTTGATTACTTTTATTAAGCTCACTTAATGAAATTGTGATAATACAATTTGCTAAGTAAAACGCTGAAATGCAACAATTTTGAACTGAGCTTACCATTGAATTTTCACCGGTTCCAGACTACAACCTAGGTCTCTAAATATATATTTATTATAATTCCTGAAGCGCTTTACACATAACCCTGGTCTTAAAAAATCCAACCAAAACAGAACATCATCTGTTTTTCTATGGACGTCGTACTTTATTTTTCAAAACATTTGTATTGTGTGGCTCTGATTTTTTTTTTTTTTTTTTTTTAGGCCGTGGCTCTGATAAGTTGATTTAATTTGTATAGGAAAACTGCTGAGGGAAGCACAACCTGACACTGAATTAATGGACATTTTAATACAGGCCACAAAAGCCGGTGACCATAAGATACTACAGAAATTGTGTGCTTCAGTAGATGATGAAGTTTCAAATTCTGTATACGAGGAGGAGGAAGAAGAGGTATTTTATGATATGATTCGTTTACGTATTACCCCTCCGTATTTGGTATAATAGACAAATTGCTCTAAATTTTGTTGAAGTTTATTTGGCTTGCTGACCAATTGGGAAAAATATACTACAGCGTGGAACAAATAAAATGAACAACTTCACTTAGAAAACGAGAGCCAGCGAGTATAACAACTCTTGCTTTTTTAGGAGTTAACTTTGATTGATATAGAGGAACAGCAACTTGTCAAAACTTCAAAAACCTATGTTTCTGGACTCAATTGAAGGGGCTCTATTGTTCATAAATATCATTTTATACCATGTTGTTTATTTTAATTTTATAACTTAATTTTGTTTTTCCTTTCCGTCCGTATCTTAACTAGGGTCCGCATGTGGACATCGCTACAAGATGGCTTGACGGGCTAGTCAGTAAGGACAACAACATTACAAATGAAATTTATTCACTACAAACTGTTGAATTTGACCGTCAGGTACTTGACTTACTGCATCCTGTTTTTTTTTTTTCCCTTTTCATTGCAATGGTATGTTACCCTTATCCATTTTTCTTATACCACCCTCCTGCTTCTTTAAGAAGTTGTTGACTCATTTTGGCTCATGCCACTTAAATCTTATGTAAGATTATTATTATTTCTTTAATAAGAAACATTTAGTTGATGAGATGAAATGACAAAAAGAGGTGAAACCCCCTTCCAACGATTCTAGGAAATTACAAAAAAAATATACTTCCGTTGGGCTATAACTGTAAGTGTAGATAAGCTACAGCTATGAAACTATGGCGAAAAAGGTTATCTAAGATTGTTGCAATCAAAAGAGAGCCTCTCTAGGCTTCTACCTGAAAATGTTCTAATTAGGCTTGTTTTGTCTACTTGATTAGCCAAGAAAAATAGGACAATGATTTTCTGAATGATTACAACTTTGAAGCTTTTATTAGCTAGTTTAGATGTTATATTCCCCTGCAACTCTGACCTACATGACAATCATTTATAGGAGCTGCGGAGACTTGTTCGAAAAGTTCATACGATTGAAGAACGCAAGGCAGCAATTGAAGAGAATGAGGATGAAGTCAATACCGCGATAACAAACGCCACAAAGCCCCTTGCTCGTTTCCTTTGTAGAATGGCGAAACAGTTGCCCTCCTATGAACTCTAGTATGAATTTATTTGTTCACTATATTGATTTCGCATTCTTTCCAATGCAAACTTATTTGCTCTTTACAACCTCGCAGACTGTTTATTCACACTTTCAACACCTACTTTTCCTTTTCTTTCACACCTCCTTTAAAGTCTACTTGACCCCAAGTAGTTGAGCGCTAACCAGGATTTTAGAGATTGTTTATCAGGTTCTGGGTGTAATATGTTTTTCAAGGTCTTTCTTGCTTCTTTTGCTGCCCATATCCAATACTCTTTTCTCTAGGAATGCCTTTTAATAGTGGGGGAATTTATTATAGACCCGAGATCTGAAAGGGAGAGGTAGAAAAGATGGACATTGTGGAAGAGTTTTGACCTATTGATGATGCAACTAGACGCATAATTGAAATTGTTAGGAAGCCAACAAAAGCTAGGTTACATTTAGGGATAGTCATGATATTGTTTAAAATTCTGGTCTTGGCCTTTTCTGCATCAGCTTATGCCAATTGAAGGTTGCATAAACCAACAAAACTTTTGCTTTAAAATTGCAATTTCTTCTCTATGATGGGAGATTAGTATCGAATGACGCCATTTCTTTTAGTGGTATTTACACGCTGATTGAGCAATGATTGGAGGTGACGCAGGCATCCACATCAATCCCTCAAACCAAAAGTCGAGACCTCTTTTTGAATTTTTCATGTCATTAACTTCAATATTTTCGGCCAAAACTTAATATTTGCTGAAATTTAGCCCATTGACATTGACAGGACGATCGCCAACCTGCTCTTAACTCAAATTGGACAAAAGGGTAAGCGAAATTTGAACAGAATTACTCTTGGACATCGTGTGAATTGTGGGAAGCAAATAAAACCCACCAAAATGGCGGTCCAGTTCACCGAAGAAGACAACTTCCTGATAAATAGGGAATTGTGCTTGAGTTGTCTTGTATGTTAATTTGTTCGTTTTTGTGATATTAATTTATTAGATGATTAATTGAATGTCGAATTACAAAAAATATATCCTTGAATTTTGTTGCTGGTTAAAAAAATATTCACATTCTTTCAAA

mRNA sequence

GCCGAACCCGATTTCATCAATTTATGGTGCCGGTACGCCGCCGTGAACTGATGGACATCAACCATGAGTCATATGGTTCGGGCTCTCCGGCAGTGGCCGATGGTGCAGAAACATTGTCGTGGTTGCGCCGTACATCATTTTCTCTCCTCATCTCCGCCGTGGGTGGCCAAAAGAATCGACTCTCGTCGACTATCTTTAGCTACCGTTCATTCTGCTCGTGGCGAAGTCCAATATGGATCAAAAGGACTCAGATTACCCAAAGCTCCAGCACCAGCCAAATCCCAAGAAGATGAGAGCGTCGATGATGATTCGGATGCTAGAAAGAGCCGCAACCAGCTTAAACGGGAAGCTCGACGAGCCGTCCAATGGGGCATGGATCTTGCGGCCTTCTCCACTCCTCAAATTAAACGCATCCTTAGAGTGACGTCTCTCGAGAAAGATATCTTCGACGCAATAATGCTTGTGAAGAGGTTTGGGAGTGATGTCAGAGAAGGAAAGCGAAGGCAGTTCAATTACATTGGATCAATTGATGAAAATAATGTAAACTTGCTGTCTCTATGGTCCTTGAATATATATGAGCACGAGATCCGGTTGCCACTTATCCCACTAAACTGCATTCCGGTGACTACTCAACAAGTTGATGCCACAAAAGCCGGTGACCATAAGATACTACAGAAATTGTGTGCTTCAGTAGATGATGAAGTTTCAAATTCTGTATACGAGGAGGAGGAAGAAGAGGGTCCGCATGTGGACATCGCTACAAGATGGCTTGACGGGCTAGTCAGTAAGGACAACAACATTACAAATGAAATTTATTCACTACAAACTGTTGAATTTGACCGTCAGGAGCTGCGGAGACTTGTTCGAAAAGTTCATACGATTGAAGAACGCAAGGCAGCAATTGAAGAGAATGAGGATGAAGTCAATACCGCGATAACAAACGCCACAAAGCCCCTTGCTCGTTTCCTTTGTAGAATGGCGAAACAGTTGCCCTCCTATGAACTCTAGACGATCGCCAACCTGCTCTTAACTCAAATTGGACAAAAGGGTAAGCGAAATTTGAACAGAATTACTCTTGGACATCGTGTGAATTGTGGGAAGCAAATAAAACCCACCAAAATGGCGGTCCAGTTCACCGAAGAAGACAACTTCCTGATAAATAGGGAATTGTGCTTGAGTTGTCTTGTATGTTAATTTGTTCGTTTTTGTGATATTAATTTATTAGATGATTAATTGAATGTCGAATTACAAAAAATATATCCTTGAATTTTGTTGCTGGTTAAAAAAATATTCACATTCTTTCAAA

Coding sequence (CDS)

ATGAGTCATATGGTTCGGGCTCTCCGGCAGTGGCCGATGGTGCAGAAACATTGTCGTGGTTGCGCCGTACATCATTTTCTCTCCTCATCTCCGCCGTGGGTGGCCAAAAGAATCGACTCTCGTCGACTATCTTTAGCTACCGTTCATTCTGCTCGTGGCGAAGTCCAATATGGATCAAAAGGACTCAGATTACCCAAAGCTCCAGCACCAGCCAAATCCCAAGAAGATGAGAGCGTCGATGATGATTCGGATGCTAGAAAGAGCCGCAACCAGCTTAAACGGGAAGCTCGACGAGCCGTCCAATGGGGCATGGATCTTGCGGCCTTCTCCACTCCTCAAATTAAACGCATCCTTAGAGTGACGTCTCTCGAGAAAGATATCTTCGACGCAATAATGCTTGTGAAGAGGTTTGGGAGTGATGTCAGAGAAGGAAAGCGAAGGCAGTTCAATTACATTGGATCAATTGATGAAAATAATGTAAACTTGCTGTCTCTATGGTCCTTGAATATATATGAGCACGAGATCCGGTTGCCACTTATCCCACTAAACTGCATTCCGGTGACTACTCAACAAGTTGATGCCACAAAAGCCGGTGACCATAAGATACTACAGAAATTGTGTGCTTCAGTAGATGATGAAGTTTCAAATTCTGTATACGAGGAGGAGGAAGAAGAGGGTCCGCATGTGGACATCGCTACAAGATGGCTTGACGGGCTAGTCAGTAAGGACAACAACATTACAAATGAAATTTATTCACTACAAACTGTTGAATTTGACCGTCAGGAGCTGCGGAGACTTGTTCGAAAAGTTCATACGATTGAAGAACGCAAGGCAGCAATTGAAGAGAATGAGGATGAAGTCAATACCGCGATAACAAACGCCACAAAGCCCCTTGCTCGTTTCCTTTGTAGAATGGCGAAACAGTTGCCCTCCTATGAACTCTAG

Protein sequence

MSHMVRALRQWPMVQKHCRGCAVHHFLSSSPPWVAKRIDSRRLSLATVHSARGEVQYGSKGLRLPKAPAPAKSQEDESVDDDSDARKSRNQLKREARRAVQWGMDLAAFSTPQIKRILRVTSLEKDIFDAIMLVKRFGSDVREGKRRQFNYIGSIDENNVNLLSLWSLNIYEHEIRLPLIPLNCIPVTTQQVDATKAGDHKILQKLCASVDDEVSNSVYEEEEEEGPHVDIATRWLDGLVSKDNNITNEIYSLQTVEFDRQELRRLVRKVHTIEERKAAIEENEDEVNTAITNATKPLARFLCRMAKQLPSYEL
Homology
BLAST of Lsi04G017530.1 vs. ExPASy TrEMBL
Match: A0A0A0LH61 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872730 PE=4 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 3.7e-121
Identity = 245/318 (77.04%), Postives = 259/318 (81.45%), Query Frame = 0

Query: 1   MSHMVRALRQWP-MVQKHCRGCAVHHFLSSSPPWVAKRIDSRRLSLATVHSARGEVQYGS 60
           MSHMVRALRQWP MVQKHC GCAVHHFL SSPPWVAKRI SRRLSLATVHSAR EVQY S
Sbjct: 1   MSHMVRALRQWPSMVQKHCCGCAVHHFLFSSPPWVAKRIYSRRLSLATVHSARREVQYES 60

Query: 61  KGLRLPKAPAPAKSQEDESV-DDDSDARKSRNQLKREARRAVQWGMDLAAFSTPQIKRIL 120
           KGLRL KAPA AKSQE ES+ DDD D RKSRNQLKREARRAVQWGMDLA FST QIKRIL
Sbjct: 61  KGLRLSKAPALAKSQEHESINDDDLDVRKSRNQLKREARRAVQWGMDLATFSTSQIKRIL 120

Query: 121 RVTSLEKDIFDAIMLVKRFGSDVREGKRRQFNYIGSIDENNVNLLSLWSLNIYEHEIRLP 180
            VTSLEKD+FDAIMLVKR G+DVREGKRRQFNYIG +            L   + +  L 
Sbjct: 121 SVTSLEKDVFDAIMLVKRLGNDVREGKRRQFNYIGKL------------LRDAQPDTELM 180

Query: 181 LIPLNCIPVTTQQVDATKAGDHKILQKLCASVDDEVSNSVY--EEEEEEGPHVDIATRWL 240
            +           + +TKAGDHKILQ+LCASVDDEVS  VY  EEEEEEGPHVDIATRWL
Sbjct: 181 DV----------LIQSTKAGDHKILQRLCASVDDEVSKYVYEEEEEEEEGPHVDIATRWL 240

Query: 241 DGLVSKDNNITNEIYSLQTVEFDRQELRRLVRKVHTIEERKAAIEENEDEVNTAITNATK 300
           DGL+SK+N IT EIYSLQTVEFDRQELRRLVRKVH +EERKAAIEEN DEVNTA+TNA K
Sbjct: 241 DGLISKNNIITKEIYSLQTVEFDRQELRRLVRKVHMVEERKAAIEENGDEVNTAVTNARK 296

Query: 301 PLARFLCRMAKQLPSYEL 315
           PLARFLCRMAKQLPS EL
Sbjct: 301 PLARFLCRMAKQLPSDEL 296

BLAST of Lsi04G017530.1 vs. ExPASy TrEMBL
Match: A0A6J1FF35 (uncharacterized protein LOC111443507 OS=Cucurbita moschata OX=3662 GN=LOC111443507 PE=4 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 3.4e-119
Identity = 237/317 (74.76%), Postives = 251/317 (79.18%), Query Frame = 0

Query: 1   MSHMVRALRQWPMVQKHCRGCAVHHFLSSSPPWVAKRIDSRRLSLATVHSARGEVQYGSK 60
           M HMVRALR WPM+Q HC GC VHHFL SSPPWVAKRIDSRRL+LATVHSAR EVQYGSK
Sbjct: 1   MGHMVRALRHWPMLQNHCFGCTVHHFL-SSPPWVAKRIDSRRLTLATVHSARREVQYGSK 60

Query: 61  GLRLPKAPAPAKSQEDESVDDDSDARKSRNQLKREARRAVQWGMDLAAFSTPQIKRILRV 120
           GLRL KA APA+ QEDESVD+D D RKSRNQLKREARRAVQWGMDLAAFSTPQIKRILRV
Sbjct: 61  GLRLSKAQAPAEFQEDESVDEDLDVRKSRNQLKREARRAVQWGMDLAAFSTPQIKRILRV 120

Query: 121 TSLEKDIFDAIMLVKRFGSDVREGKRRQFNYIGSIDENNVNLLSLWSLNIYEHEIRLPLI 180
            SLEKD+FDAIMLVKR G DVREGKRRQF+YIG +            L   + E+   LI
Sbjct: 121 ASLEKDVFDAIMLVKRLGRDVREGKRRQFSYIGKL------------LRDVQPELMDSLI 180

Query: 181 PLNCIPVTTQQVDATKAGDHKILQKLCASV---DDEVSNSVYEEEEEEGPHVDIATRWLD 240
                        ATK GDH +LQ L  SV   DDE ++S YEEEEEEGPHVDI TRWLD
Sbjct: 181 ------------QATKDGDHSMLQTLSGSVAVDDDEDTDSEYEEEEEEGPHVDIVTRWLD 240

Query: 241 GLVSKDNNITNEIYSLQTVEFDRQELRRLVRKVHTIEERKAAIEENEDEVNTAITNATKP 300
           GLVSKD N+TNEIYSLQTVEFDRQELRRLVRKVH +EERKAA EENEDEVN AIT A KP
Sbjct: 241 GLVSKDKNVTNEIYSLQTVEFDRQELRRLVRKVHMVEERKAATEENEDEVNVAITTAKKP 292

Query: 301 LARFLCRMAKQLPSYEL 315
           LARFLCRMAKQLP YEL
Sbjct: 301 LARFLCRMAKQLPPYEL 292

BLAST of Lsi04G017530.1 vs. ExPASy TrEMBL
Match: A0A1S4E5J2 (UPF0307 protein plu4061 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503870 PE=4 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 4.5e-119
Identity = 243/321 (75.70%), Postives = 258/321 (80.37%), Query Frame = 0

Query: 1   MSHMVRALRQW-PMVQKHCRGCAVHHFLSSSPPWVAKRIDSRRLSLATVHSARGEVQYGS 60
           MSHMVRALRQW PM+QKHC GCAVHHFLS SPPWVAKRI SRRLSLATVHSAR EVQY S
Sbjct: 1   MSHMVRALRQWPPMLQKHCCGCAVHHFLSLSPPWVAKRIYSRRLSLATVHSARREVQYES 60

Query: 61  KGLRLPKAPAPAKSQEDESV-DDDSDARKSRNQLKREARRAVQWGMDLAAFSTPQIKRIL 120
           KGLRL KAPA AKSQEDES+ DDDSD RKSRNQLKREARRAVQWGMDLA FST QIKRIL
Sbjct: 61  KGLRLSKAPALAKSQEDESINDDDSDVRKSRNQLKREARRAVQWGMDLATFSTSQIKRIL 120

Query: 121 RVTSLEKDIFDAIMLVKRFGSDVREGKRRQFNYIGSI---DENNVNLLSLWSLNIYEHEI 180
            VTSLEKD+FDAIMLVKR G+DVREG+RRQFNYIG +    + +  LL +          
Sbjct: 121 SVTSLEKDVFDAIMLVKRLGNDVREGRRRQFNYIGKLLRDAQPDTELLDI---------- 180

Query: 181 RLPLIPLNCIPVTTQQVDATKAGDHKILQKLCASVDDEVSNSVY--EEEEEEGPHVDIAT 240
                           + ATKAGDHKILQ+LCASVDDEVS SV+  EEEEEEGPHVD+AT
Sbjct: 181 ---------------LIQATKAGDHKILQRLCASVDDEVSKSVHEEEEEEEEGPHVDVAT 240

Query: 241 RWLDGLVSKDNNITNEIYSLQTVEFDRQELRRLVRKVHTIEERKAAIEENEDEVNTAITN 300
           RW DGL+SKDN IT EIYS QTVEFDRQELRRLVRKVH +EERKAAIEEN DEVN AITN
Sbjct: 241 RWFDGLISKDNIITKEIYS-QTVEFDRQELRRLVRKVHMVEERKAAIEENGDEVNAAITN 295

Query: 301 ATKPLARFLCRMAKQLPSYEL 315
           A KPLARFL RMAKQLPS EL
Sbjct: 301 ARKPLARFLYRMAKQLPSDEL 295

BLAST of Lsi04G017530.1 vs. ExPASy TrEMBL
Match: A0A1S4E5I7 (UPF0307 protein Asuc_0809 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503870 PE=4 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 5.8e-119
Identity = 243/322 (75.47%), Postives = 258/322 (80.12%), Query Frame = 0

Query: 1   MSHMVRALRQW-PMVQKHCRGCAVHHFLSSSPPWVAKRIDSRRLSLATVHSARGEVQYGS 60
           MSHMVRALRQW PM+QKHC GCAVHHFLS SPPWVAKRI SRRLSLATVHSAR EVQY S
Sbjct: 1   MSHMVRALRQWPPMLQKHCCGCAVHHFLSLSPPWVAKRIYSRRLSLATVHSARREVQYES 60

Query: 61  KGLRLPKAPAPAKSQEDESV-DDDSDARKSRNQLKREARRAVQWGMDLAAFSTPQIKRIL 120
           KGLRL KAPA AKSQEDES+ DDDSD RKSRNQLKREARRAVQWGMDLA FST QIKRIL
Sbjct: 61  KGLRLSKAPALAKSQEDESINDDDSDVRKSRNQLKREARRAVQWGMDLATFSTSQIKRIL 120

Query: 121 RVTSLEKDIFDAIMLVKRFGSDVREGKRRQFNYIGSI---DENNVNLLSLWSLNIYEHEI 180
            VTSLEKD+FDAIMLVKR G+DVREG+RRQFNYIG +    + +  LL +          
Sbjct: 121 SVTSLEKDVFDAIMLVKRLGNDVREGRRRQFNYIGKLLRDAQPDTELLDI---------- 180

Query: 181 RLPLIPLNCIPVTTQQVDATKAGDHKILQKLCASVDDEVSNSVY---EEEEEEGPHVDIA 240
                           + ATKAGDHKILQ+LCASVDDEVS SV+   EEEEEEGPHVD+A
Sbjct: 181 ---------------LIQATKAGDHKILQRLCASVDDEVSKSVHEEEEEEEEEGPHVDVA 240

Query: 241 TRWLDGLVSKDNNITNEIYSLQTVEFDRQELRRLVRKVHTIEERKAAIEENEDEVNTAIT 300
           TRW DGL+SKDN IT EIYS QTVEFDRQELRRLVRKVH +EERKAAIEEN DEVN AIT
Sbjct: 241 TRWFDGLISKDNIITKEIYS-QTVEFDRQELRRLVRKVHMVEERKAAIEENGDEVNAAIT 296

Query: 301 NATKPLARFLCRMAKQLPSYEL 315
           NA KPLARFL RMAKQLPS EL
Sbjct: 301 NARKPLARFLYRMAKQLPSDEL 296

BLAST of Lsi04G017530.1 vs. ExPASy TrEMBL
Match: A0A6J1IM05 (uncharacterized protein LOC111476812 OS=Cucurbita maxima OX=3661 GN=LOC111476812 PE=4 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 5.0e-118
Identity = 236/317 (74.45%), Postives = 250/317 (78.86%), Query Frame = 0

Query: 1   MSHMVRALRQWPMVQKHCRGCAVHHFLSSSPPWVAKRIDSRRLSLATVHSARGEVQYGSK 60
           M HMVRALR WPM+Q HC GC VHHFL SSPPWVAKRIDS RL+LATVHSAR EVQ+GSK
Sbjct: 1   MGHMVRALRHWPMLQNHCFGCTVHHFL-SSPPWVAKRIDSLRLTLATVHSARREVQHGSK 60

Query: 61  GLRLPKAPAPAKSQEDESVDDDSDARKSRNQLKREARRAVQWGMDLAAFSTPQIKRILRV 120
           GLRL KA APA+ QEDESVD+D D RKSRNQLKREARRAVQWGMDLAAFSTPQIKRILRV
Sbjct: 61  GLRLSKAQAPAEFQEDESVDEDLDVRKSRNQLKREARRAVQWGMDLAAFSTPQIKRILRV 120

Query: 121 TSLEKDIFDAIMLVKRFGSDVREGKRRQFNYIGSIDENNVNLLSLWSLNIYEHEIRLPLI 180
            SLEKD+FDAIMLVKR G DVREGKRRQF+YIG +            L   + E+   LI
Sbjct: 121 ASLEKDVFDAIMLVKRLGRDVREGKRRQFSYIGKL------------LRDVQPELMDSLI 180

Query: 181 PLNCIPVTTQQVDATKAGDHKILQKLCASV---DDEVSNSVYEEEEEEGPHVDIATRWLD 240
                        ATK GDH  LQ L  SV   DDE ++S YEEEEEEGPHVDIATRWLD
Sbjct: 181 ------------QATKDGDHSTLQTLSGSVAVDDDEDTDSEYEEEEEEGPHVDIATRWLD 240

Query: 241 GLVSKDNNITNEIYSLQTVEFDRQELRRLVRKVHTIEERKAAIEENEDEVNTAITNATKP 300
           GLVSKD N+TNEIYSLQTVEFDRQELRRLVRKVH +EERKAA EENEDEVN AIT A KP
Sbjct: 241 GLVSKDKNVTNEIYSLQTVEFDRQELRRLVRKVHMVEERKAATEENEDEVNVAITTAKKP 292

Query: 301 LARFLCRMAKQLPSYEL 315
           LARFLCRMAKQLP YEL
Sbjct: 301 LARFLCRMAKQLPPYEL 292

BLAST of Lsi04G017530.1 vs. NCBI nr
Match: XP_038897014.1 (UPF0307 protein ECA0281 isoform X1 [Benincasa hispida])

HSP 1 Score: 447.2 bits (1149), Expect = 1.2e-121
Identity = 243/314 (77.39%), Postives = 255/314 (81.21%), Query Frame = 0

Query: 1   MSHMVRALRQWPMVQKHCRGCAVHHFLSSSPPWVAKRIDSRRLSLATVHSARGEVQYGSK 60
           MSHMVRALRQWPM+QKH  GCAV H   S  PWV KR DSRRLSLATVHSAR EVQ  SK
Sbjct: 1   MSHMVRALRQWPMLQKHYCGCAVRHLFPSCLPWVPKRTDSRRLSLATVHSARREVQ-ESK 60

Query: 61  GLRLPKAPAPAKSQEDESVDDDSDARKSRNQLKREARRAVQWGMDLAAFSTPQIKRILRV 120
           GLRLPKAPAPAKSQEDESV+DDSD RKSRNQLKREARRAVQWGMDLAAFS PQIKRIL V
Sbjct: 61  GLRLPKAPAPAKSQEDESVNDDSDVRKSRNQLKREARRAVQWGMDLAAFSIPQIKRILSV 120

Query: 121 TSLEKDIFDAIMLVKRFGSDVREGKRRQFNYIGSIDENNVNLLSLWSLNIYEHEIRLPLI 180
           TSLEKDIFDAIMLVKR GSDVREGKRRQFNYIG +            L   + +  L  I
Sbjct: 121 TSLEKDIFDAIMLVKRLGSDVREGKRRQFNYIGKL------------LRDAQPDTELMDI 180

Query: 181 PLNCIPVTTQQVDATKAGDHKILQKLCASVDDEVSNSVYEEEEEEGPHVDIATRWLDGLV 240
                      + ATK GDHKILQKLCASVDD+VS SVYEEEEEEGPHV+IATRWLDGL+
Sbjct: 181 ----------LIQATKVGDHKILQKLCASVDDQVSKSVYEEEEEEGPHVEIATRWLDGLI 240

Query: 241 SKDNNITNEIYSLQTVEFDRQELRRLVRKVHTIEERKAAIEENEDEVNTAITNATKPLAR 300
           SKDNNITNEIYSLQTVEFDRQELRRLVRKV  IE++KAAIEEN DEVN  ITNA KPLA 
Sbjct: 241 SKDNNITNEIYSLQTVEFDRQELRRLVRKVRMIEKQKAAIEENGDEVNMTITNARKPLAH 291

Query: 301 FLCRMAKQLPSYEL 315
           FLCR+AKQLPSYEL
Sbjct: 301 FLCRIAKQLPSYEL 291

BLAST of Lsi04G017530.1 vs. NCBI nr
Match: XP_004136378.1 (uncharacterized protein LOC101214378 [Cucumis sativus] >KGN60042.1 hypothetical protein Csa_001476 [Cucumis sativus])

HSP 1 Score: 444.5 bits (1142), Expect = 7.6e-121
Identity = 245/318 (77.04%), Postives = 259/318 (81.45%), Query Frame = 0

Query: 1   MSHMVRALRQWP-MVQKHCRGCAVHHFLSSSPPWVAKRIDSRRLSLATVHSARGEVQYGS 60
           MSHMVRALRQWP MVQKHC GCAVHHFL SSPPWVAKRI SRRLSLATVHSAR EVQY S
Sbjct: 1   MSHMVRALRQWPSMVQKHCCGCAVHHFLFSSPPWVAKRIYSRRLSLATVHSARREVQYES 60

Query: 61  KGLRLPKAPAPAKSQEDESV-DDDSDARKSRNQLKREARRAVQWGMDLAAFSTPQIKRIL 120
           KGLRL KAPA AKSQE ES+ DDD D RKSRNQLKREARRAVQWGMDLA FST QIKRIL
Sbjct: 61  KGLRLSKAPALAKSQEHESINDDDLDVRKSRNQLKREARRAVQWGMDLATFSTSQIKRIL 120

Query: 121 RVTSLEKDIFDAIMLVKRFGSDVREGKRRQFNYIGSIDENNVNLLSLWSLNIYEHEIRLP 180
            VTSLEKD+FDAIMLVKR G+DVREGKRRQFNYIG +            L   + +  L 
Sbjct: 121 SVTSLEKDVFDAIMLVKRLGNDVREGKRRQFNYIGKL------------LRDAQPDTELM 180

Query: 181 LIPLNCIPVTTQQVDATKAGDHKILQKLCASVDDEVSNSVY--EEEEEEGPHVDIATRWL 240
            +           + +TKAGDHKILQ+LCASVDDEVS  VY  EEEEEEGPHVDIATRWL
Sbjct: 181 DV----------LIQSTKAGDHKILQRLCASVDDEVSKYVYEEEEEEEEGPHVDIATRWL 240

Query: 241 DGLVSKDNNITNEIYSLQTVEFDRQELRRLVRKVHTIEERKAAIEENEDEVNTAITNATK 300
           DGL+SK+N IT EIYSLQTVEFDRQELRRLVRKVH +EERKAAIEEN DEVNTA+TNA K
Sbjct: 241 DGLISKNNIITKEIYSLQTVEFDRQELRRLVRKVHMVEERKAAIEENGDEVNTAVTNARK 296

Query: 301 PLARFLCRMAKQLPSYEL 315
           PLARFLCRMAKQLPS EL
Sbjct: 301 PLARFLCRMAKQLPSDEL 296

BLAST of Lsi04G017530.1 vs. NCBI nr
Match: XP_022937103.1 (uncharacterized protein LOC111443507 [Cucurbita moschata])

HSP 1 Score: 438.0 bits (1125), Expect = 7.1e-119
Identity = 237/317 (74.76%), Postives = 251/317 (79.18%), Query Frame = 0

Query: 1   MSHMVRALRQWPMVQKHCRGCAVHHFLSSSPPWVAKRIDSRRLSLATVHSARGEVQYGSK 60
           M HMVRALR WPM+Q HC GC VHHFL SSPPWVAKRIDSRRL+LATVHSAR EVQYGSK
Sbjct: 1   MGHMVRALRHWPMLQNHCFGCTVHHFL-SSPPWVAKRIDSRRLTLATVHSARREVQYGSK 60

Query: 61  GLRLPKAPAPAKSQEDESVDDDSDARKSRNQLKREARRAVQWGMDLAAFSTPQIKRILRV 120
           GLRL KA APA+ QEDESVD+D D RKSRNQLKREARRAVQWGMDLAAFSTPQIKRILRV
Sbjct: 61  GLRLSKAQAPAEFQEDESVDEDLDVRKSRNQLKREARRAVQWGMDLAAFSTPQIKRILRV 120

Query: 121 TSLEKDIFDAIMLVKRFGSDVREGKRRQFNYIGSIDENNVNLLSLWSLNIYEHEIRLPLI 180
            SLEKD+FDAIMLVKR G DVREGKRRQF+YIG +            L   + E+   LI
Sbjct: 121 ASLEKDVFDAIMLVKRLGRDVREGKRRQFSYIGKL------------LRDVQPELMDSLI 180

Query: 181 PLNCIPVTTQQVDATKAGDHKILQKLCASV---DDEVSNSVYEEEEEEGPHVDIATRWLD 240
                        ATK GDH +LQ L  SV   DDE ++S YEEEEEEGPHVDI TRWLD
Sbjct: 181 ------------QATKDGDHSMLQTLSGSVAVDDDEDTDSEYEEEEEEGPHVDIVTRWLD 240

Query: 241 GLVSKDNNITNEIYSLQTVEFDRQELRRLVRKVHTIEERKAAIEENEDEVNTAITNATKP 300
           GLVSKD N+TNEIYSLQTVEFDRQELRRLVRKVH +EERKAA EENEDEVN AIT A KP
Sbjct: 241 GLVSKDKNVTNEIYSLQTVEFDRQELRRLVRKVHMVEERKAATEENEDEVNVAITTAKKP 292

Query: 301 LARFLCRMAKQLPSYEL 315
           LARFLCRMAKQLP YEL
Sbjct: 301 LARFLCRMAKQLPPYEL 292

BLAST of Lsi04G017530.1 vs. NCBI nr
Match: XP_016903494.1 (PREDICTED: UPF0307 protein plu4061 isoform X2 [Cucumis melo])

HSP 1 Score: 437.6 bits (1124), Expect = 9.2e-119
Identity = 243/321 (75.70%), Postives = 258/321 (80.37%), Query Frame = 0

Query: 1   MSHMVRALRQW-PMVQKHCRGCAVHHFLSSSPPWVAKRIDSRRLSLATVHSARGEVQYGS 60
           MSHMVRALRQW PM+QKHC GCAVHHFLS SPPWVAKRI SRRLSLATVHSAR EVQY S
Sbjct: 1   MSHMVRALRQWPPMLQKHCCGCAVHHFLSLSPPWVAKRIYSRRLSLATVHSARREVQYES 60

Query: 61  KGLRLPKAPAPAKSQEDESV-DDDSDARKSRNQLKREARRAVQWGMDLAAFSTPQIKRIL 120
           KGLRL KAPA AKSQEDES+ DDDSD RKSRNQLKREARRAVQWGMDLA FST QIKRIL
Sbjct: 61  KGLRLSKAPALAKSQEDESINDDDSDVRKSRNQLKREARRAVQWGMDLATFSTSQIKRIL 120

Query: 121 RVTSLEKDIFDAIMLVKRFGSDVREGKRRQFNYIGSI---DENNVNLLSLWSLNIYEHEI 180
            VTSLEKD+FDAIMLVKR G+DVREG+RRQFNYIG +    + +  LL +          
Sbjct: 121 SVTSLEKDVFDAIMLVKRLGNDVREGRRRQFNYIGKLLRDAQPDTELLDI---------- 180

Query: 181 RLPLIPLNCIPVTTQQVDATKAGDHKILQKLCASVDDEVSNSVY--EEEEEEGPHVDIAT 240
                           + ATKAGDHKILQ+LCASVDDEVS SV+  EEEEEEGPHVD+AT
Sbjct: 181 ---------------LIQATKAGDHKILQRLCASVDDEVSKSVHEEEEEEEEGPHVDVAT 240

Query: 241 RWLDGLVSKDNNITNEIYSLQTVEFDRQELRRLVRKVHTIEERKAAIEENEDEVNTAITN 300
           RW DGL+SKDN IT EIYS QTVEFDRQELRRLVRKVH +EERKAAIEEN DEVN AITN
Sbjct: 241 RWFDGLISKDNIITKEIYS-QTVEFDRQELRRLVRKVHMVEERKAAIEENGDEVNAAITN 295

Query: 301 ATKPLARFLCRMAKQLPSYEL 315
           A KPLARFL RMAKQLPS EL
Sbjct: 301 ARKPLARFLYRMAKQLPSDEL 295

BLAST of Lsi04G017530.1 vs. NCBI nr
Match: XP_023535041.1 (uncharacterized protein LOC111796585 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 437.6 bits (1124), Expect = 9.2e-119
Identity = 237/317 (74.76%), Postives = 252/317 (79.50%), Query Frame = 0

Query: 1   MSHMVRALRQWPMVQKHCRGCAVHHFLSSSPPWVAKRIDSRRLSLATVHSARGEVQYGSK 60
           M HMVRALR WPM+Q HC GC VHHFL SSPPWVAKRIDSRRL+LATVHSAR EVQYGSK
Sbjct: 1   MGHMVRALRHWPMLQNHCFGCTVHHFL-SSPPWVAKRIDSRRLTLATVHSARREVQYGSK 60

Query: 61  GLRLPKAPAPAKSQEDESVDDDSDARKSRNQLKREARRAVQWGMDLAAFSTPQIKRILRV 120
           GLRL KA APA+ QEDESVD+D D RKSRNQLKREARRAVQWGMDLAAFSTPQIKRILRV
Sbjct: 61  GLRLSKAQAPAEFQEDESVDEDLDVRKSRNQLKREARRAVQWGMDLAAFSTPQIKRILRV 120

Query: 121 TSLEKDIFDAIMLVKRFGSDVREGKRRQFNYIGSIDENNVNLLSLWSLNIYEHEIRLPLI 180
            SLEKD+FDAIMLVKR G DVREGKRRQF+YIG +            L   + E+   LI
Sbjct: 121 ASLEKDVFDAIMLVKRLGRDVREGKRRQFSYIGKL------------LRDVQPELMDSLI 180

Query: 181 PLNCIPVTTQQVDATKAGDHKILQKLCASV---DDEVSNSVYEEEEEEGPHVDIATRWLD 240
                        ATK GDH +LQ L  SV   DDE ++S YEEEEE+GPHVDIATRWLD
Sbjct: 181 ------------QATKDGDHTMLQTLSGSVAVDDDEDTDSEYEEEEEKGPHVDIATRWLD 240

Query: 241 GLVSKDNNITNEIYSLQTVEFDRQELRRLVRKVHTIEERKAAIEENEDEVNTAITNATKP 300
           GLVSKD N+TNEIYSLQTVEFDRQELRRLVRKVH +EERKAA EENEDEVN AIT A KP
Sbjct: 241 GLVSKDKNVTNEIYSLQTVEFDRQELRRLVRKVHMVEERKAATEENEDEVNVAITTARKP 292

Query: 301 LARFLCRMAKQLPSYEL 315
           LARFLCRMAKQLP YEL
Sbjct: 301 LARFLCRMAKQLPPYEL 292

BLAST of Lsi04G017530.1 vs. TAIR 10
Match: AT4G24175.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0307 (InterPro:IPR006839); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 192.2 bits (487), Expect = 6.3e-49
Identity = 117/262 (44.66%), Postives = 157/262 (59.92%), Query Frame = 0

Query: 65  PKAPAPAKSQEDESVDDD---SDARKSRNQLKREARRAVQWGMDLAAFSTPQIKRILRVT 124
           P+A  P     +E  D+D   SD+ +SRNQ KR+ARRAV+WGM+LA+FS  Q+K+IL+  
Sbjct: 62  PEALKPTVIVAEEDGDNDGYESDSLRSRNQRKRDARRAVKWGMELASFSGDQVKQILKAA 121

Query: 125 SLEKDIFDAIMLVKRFGSDVREGKRRQFNYIGSIDENNVNLLSLWSLNIYEHEIRLPLIP 184
           SL ++++DA+ML KR GSDVREGKRR FNYIG +            L   E ++   LI 
Sbjct: 122 SLGEEVYDALMLAKRLGSDVREGKRRHFNYIGKL------------LREVEPDLMDTLI- 181

Query: 185 LNCIPVTTQQVDATKAGDHKILQKLCASV-----------DDEVSNSVYEEEEEEGPHVD 244
                      +ATK GDH  LQ L +S            DD+      +EEE    +  
Sbjct: 182 -----------NATKQGDHSTLQTLISSAKDVADDVGDSYDDDTETESEDEEEGSDEYTA 241

Query: 245 IATRWLDGLVSKDNNITNEIYSLQTVEFDRQELRRLVRKVHTI-EERKAAIEENEDEVNT 304
           +A RW DGL+S++  +T E+YSLQ+V+FDRQELR+LVRKV  + E+RK   EE + EV  
Sbjct: 242 MAARWFDGLISQNVELTKEVYSLQSVDFDRQELRKLVRKVQLVHEQRKGTTEEKQKEVEA 299

Query: 305 AITNATKPLARFLCRMAKQLPS 312
           A+  A K L +FLC MAKQ+ S
Sbjct: 302 ALVTAEKSLNQFLCSMAKQVHS 299

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LH613.7e-12177.04Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G872730 PE=4 SV=1[more]
A0A6J1FF353.4e-11974.76uncharacterized protein LOC111443507 OS=Cucurbita moschata OX=3662 GN=LOC1114435... [more]
A0A1S4E5J24.5e-11975.70UPF0307 protein plu4061 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503870 PE=4 ... [more]
A0A1S4E5I75.8e-11975.47UPF0307 protein Asuc_0809 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503870 PE=... [more]
A0A6J1IM055.0e-11874.45uncharacterized protein LOC111476812 OS=Cucurbita maxima OX=3661 GN=LOC111476812... [more]
Match NameE-valueIdentityDescription
XP_038897014.11.2e-12177.39UPF0307 protein ECA0281 isoform X1 [Benincasa hispida][more]
XP_004136378.17.6e-12177.04uncharacterized protein LOC101214378 [Cucumis sativus] >KGN60042.1 hypothetical ... [more]
XP_022937103.17.1e-11974.76uncharacterized protein LOC111443507 [Cucurbita moschata][more]
XP_016903494.19.2e-11975.70PREDICTED: UPF0307 protein plu4061 isoform X2 [Cucumis melo][more]
XP_023535041.19.2e-11974.76uncharacterized protein LOC111796585 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT4G24175.16.3e-4944.66unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 263..283
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..93
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..93
NoneNo IPR availablePANTHERPTHR36898OSJNBB0026I12.6 PROTEINcoord: 192..311
coord: 1..154
IPR023153PSPTO4464-like domain superfamilyGENE3D1.10.60.30coord: 97..157
e-value: 9.7E-10
score: 40.0
IPR023153PSPTO4464-like domain superfamilySUPERFAMILY158710PSPTO4464-likecoord: 98..154
IPR023153PSPTO4464-like domain superfamilySUPERFAMILY158710PSPTO4464-likecoord: 221..276
IPR006839Ribosome-associated, YjgAPFAMPF04751DUF615coord: 86..154
e-value: 5.0E-18
score: 65.6
coord: 216..283
e-value: 3.5E-9
score: 36.8
IPR006839Ribosome-associated, YjgACDDcd16331YjgA-likecoord: 86..279
e-value: 2.93566E-19
score: 80.9632

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi04G017530Lsi04G017530gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi04G017530.1.exon.9Lsi04G017530.1.exon.9exon
Lsi04G017530.1.exon.8Lsi04G017530.1.exon.8exon
Lsi04G017530.1.exon.7Lsi04G017530.1.exon.7exon
Lsi04G017530.1.exon.6Lsi04G017530.1.exon.6exon
Lsi04G017530.1.exon.5Lsi04G017530.1.exon.5exon
Lsi04G017530.1.exon.4Lsi04G017530.1.exon.4exon
Lsi04G017530.1.exon.3Lsi04G017530.1.exon.3exon
Lsi04G017530.1.exon.2Lsi04G017530.1.exon.2exon
Lsi04G017530.1.exon.1Lsi04G017530.1.exon.1exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi04G017530.1.five_prime_UTR.1Lsi04G017530.1.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi04G017530.1.CDS.1Lsi04G017530.1.CDS.1CDS
Lsi04G017530.1.CDS.2Lsi04G017530.1.CDS.2CDS
Lsi04G017530.1.CDS.3Lsi04G017530.1.CDS.3CDS
Lsi04G017530.1.CDS.4Lsi04G017530.1.CDS.4CDS
Lsi04G017530.1.CDS.5Lsi04G017530.1.CDS.5CDS
Lsi04G017530.1.CDS.6Lsi04G017530.1.CDS.6CDS
Lsi04G017530.1.CDS.7Lsi04G017530.1.CDS.7CDS
Lsi04G017530.1.CDS.8Lsi04G017530.1.CDS.8CDS
Lsi04G017530.1.CDS.9Lsi04G017530.1.CDS.9CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi04G017530.1.three_prime_UTR.1Lsi04G017530.1.three_prime_UTR.1three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi04G017530.1Lsi04G017530.1-proteinpolypeptide