Lsi04G009020.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi04G009020.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	PPIase cyclophilin-type domain-containing protein
Location	chr04: 9063816 .. 9065220 (+)
Sequence length	585
RNA-Seq Expression	Lsi04G009020.1
Synteny	Lsi04G009020.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTAAGAGAATGAGCTTTAGATGTGTCTATGTCAAAGAAGATATCCTAACCATTCGCCATATTTCAATGGTAGAAAAACATGTACCCTAAATAGTCATCAACTCTAGTTCAAACTCGTGAGAACGCGCCTTCACGGATTTTTATAAATGTTCCTCTAAACCATAATACTATGCATATTGGAAAGAAGAATGGTCATAGAAATAATTCTGAAAGAGAAAGAGAATATGCAAATATAGTAAAAGGGAAAGAAGCATGTACCTGATCAAAGAATATTGTGGCTCCAAACTCATACTTCCACTTGTTCCACCTACACCACTATAGATTCATTGATTCTGACCAAAGATGAGAATTAGAAATGATGCATATAGAAAGAAGAATCCCCATATGATCATAGTTATTTCCATATGACACAACACAAACATTACAAAAGAGAAATGAGTTTCAACAAGAAAAAGAAATGAAAACCAAAGTATAAACAAACAAAAACCTACCAGCTCAACTTGATATTATATGATGCTTACAGATAATTAGACAAGATGTTTAGCAGAAAAAGAAATTTGATCAGTTCTCAAAGTTCAAACAAAACTAGCACCTACTTATCTCTCTCCTTTCTCTCTCACTCTCCCTCCATATCTCTTAAAATGGAGGTGGGGCTCTAGGAGGACTCCAAAACACATCATGTGAAGAAACCTGACCATTTGGCACCAAATTTGGACCCATATTGTAAACTCCCATTGAAGGCTGCTGTTGCTGTTGTTGCTGCTGTTGCTGTTGCTGTTGCTCCCCCATGCTCTGAGATGTTGAATTGTTCTGGCTAGTTCCAGACTTGTCTCCTGCGGCCACCTCCTCGTCCTCGAGCGGCAGCCGTTCGAATGTCGCATTGGTGAAAGTGGCAGCGATGACGATAACTGGACCGGTTGCAACGAGTGCACCGACGACAATGCCACCAACGACCTGCCCCTGCCCGCCAGCCAAGTAGACAGTTAACCCAGTAGCACCCGGCGGAGCTGGGGCAGGCAAAAAAGCACCAGAGAGCGACAATATATCGAATCGGCCCTGTAGCGTAATAACGCCGCCAGGAGCTGCCGGATGCCGGAGAGTAACATTGGCGACAACCCCATTTCCACTAAGAACTGAAACTCCTCGTTGCCGGCGCTGGGCAAAGTTGGAGATGCTTTCAACGATGTCGGTGCCGCTACCGATTTCCAAAACGTGGCTCCGGAGGGCATCGGGGCTCTCCTTCGTGACAACCACCGGTGGCTTTGGCTTGTTCTTAGATCCCGGCGGCCGGCCACGAGGGCGGCGCGTGCTTGAACTGGTGCCTGGCTCGGCTCTCTCATGGCTACCGGAGTTGTTCTCTTCATCAGCAGCTTCTAAGCTTTGCTTTAATGGAGTCGAATAA

mRNA sequence

ATGTTTCAAACTCGTGAGAACGCGCCTTCACGGATTTTTATAAATGTTCCTCTAAACCATAATACTATGCATATTGGAAAGAAGAATGTTCCAGACTTGTCTCCTGCGGCCACCTCCTCGTCCTCGAGCGGCAGCCGTTCGAATGTCGCATTGGTGAAAGTGGCAGCGATGACGATAACTGGACCGGTTGCAACGAGTGCACCGACGACAATGCCACCAACGACCTGCCCCTGCCCGCCAGCCAACGTAATAACGCCGCCAGGAGCTGCCGGATGCCGGAGAGTAACATTGGCGACAACCCCATTTCCACTAAGAACTGAAACTCCTCGTTGCCGGCGCTGGGCAAAGTTGGAGATGCTTTCAACGATGTCGGTGCCGCTACCGATTTCCAAAACGTGGCTCCGGAGGGCATCGGGGCTCTCCTTCGTGACAACCACCGGTGGCTTTGGCTTGTTCTTAGATCCCGGCGGCCGGCCACGAGGGCGGCGCGTGCTTGAACTGGTGCCTGGCTCGGCTCTCTCATGGCTACCGGAGTTGTTCTCTTCATCAGCAGCTTCTAAGCTTTGCTTTAATGGAGTCGAATAA

Coding sequence (CDS)

ATGTTTCAAACTCGTGAGAACGCGCCTTCACGGATTTTTATAAATGTTCCTCTAAACCATAATACTATGCATATTGGAAAGAAGAATGTTCCAGACTTGTCTCCTGCGGCCACCTCCTCGTCCTCGAGCGGCAGCCGTTCGAATGTCGCATTGGTGAAAGTGGCAGCGATGACGATAACTGGACCGGTTGCAACGAGTGCACCGACGACAATGCCACCAACGACCTGCCCCTGCCCGCCAGCCAACGTAATAACGCCGCCAGGAGCTGCCGGATGCCGGAGAGTAACATTGGCGACAACCCCATTTCCACTAAGAACTGAAACTCCTCGTTGCCGGCGCTGGGCAAAGTTGGAGATGCTTTCAACGATGTCGGTGCCGCTACCGATTTCCAAAACGTGGCTCCGGAGGGCATCGGGGCTCTCCTTCGTGACAACCACCGGTGGCTTTGGCTTGTTCTTAGATCCCGGCGGCCGGCCACGAGGGCGGCGCGTGCTTGAACTGGTGCCTGGCTCGGCTCTCTCATGGCTACCGGAGTTGTTCTCTTCATCAGCAGCTTCTAAGCTTTGCTTTAATGGAGTCGAATAA

Protein sequence

MFQTRENAPSRIFINVPLNHNTMHIGKKNVPDLSPAATSSSSSGSRSNVALVKVAAMTITGPVATSAPTTMPPTTCPCPPANVITPPGAAGCRRVTLATTPFPLRTETPRCRRWAKLEMLSTMSVPLPISKTWLRRASGLSFVTTTGGFGLFLDPGGRPRGRRVLELVPGSALSWLPELFSSSAASKLCFNGVE

Homology

[Close]

BLAST of Lsi04G009020.1 vs. ExPASy TrEMBL
Match: A0A0A9F391 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.0e-25
Identity = 75/135 (55.56%), Postives = 80/135 (59.26%), Query Frame = 0


Query: 59  ITGPVATSAPTTMPPTTCPCPP----ANVITPPGA------------------------- 118
           +TGP ATS+P T+PPTTCPCPP    A+ + P GA                         
Sbjct: 1   MTGPDATSSPMTLPPTTCPCPPARYTASPVAPGGAGAGRKAPDMDSISNRPRSATAAAPA 60

Query: 119 -AGCRRVTLATTPFPLRTETPRCRRWAKLEMLSTMSVPLPISKTWLRRASGLSFVTTTGG 164
            AGCR VTL T P PL TETPR RR  K  M STMS PL IS TW R   GLS VTTTGG
Sbjct: 61  PAGCRSVTLVTAPLPLSTETPRWRRREKPAMASTMSAPLAISSTWERITLGLSRVTTTGG 120

[Close]

BLAST of Lsi04G009020.1 vs. ExPASy TrEMBL
Match: A0A0A9S0X7 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.4e-24
Identity = 74/135 (54.81%), Postives = 79/135 (58.52%), Query Frame = 0


Query: 59  ITGPVATSAPTTMPPTTCPCPP----ANVITPPGA------------------------- 118
           +TGP ATS+P T+PPTTCPCPP    A+ + P GA                         
Sbjct: 1   MTGPDATSSPMTLPPTTCPCPPARYTASPVAPGGAGAGRKAPDMDSISNRPRSATAAAPA 60

Query: 119 -AGCRRVTLATTPFPLRTETPRCRRWAKLEMLSTMSVPLPISKTWLRRASGLSFVTTTGG 164
            AG R VTL T P PLRTETPR RR     M STMS PL IS TW R   GLS VTTTGG
Sbjct: 61  PAGWRSVTLVTAPLPLRTETPRWRRRENPAMASTMSAPLAISSTWERITLGLSRVTTTGG 120

[Close]

BLAST of Lsi04G009020.1 vs. ExPASy TrEMBL
Match: A0A2P5C8P9 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_173380 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.0e-16
Identity = 58/115 (50.43%), Postives = 65/115 (56.52%), Query Frame = 0


Query: 87  PGAAGCRRVTLATTPFPLRTETPRCRRWAKLEMLSTMSVPLPISKTWLRRASGLSFVTTT 146
           PG AG RRVTL T P PL  +TPR RR AK+  LSTMS P  IS TW+RRA  LS V   
Sbjct: 3   PGEAGWRRVTLVTVPVPLMMQTPRWRRRAKVATLSTMSQPSAISMTWVRRALALSRVMMM 62

Query: 147 GGFGLFLDPGGRPRGRRVLELVPGS--------ALSWLPELFSSSAASKLCFNGV 194
           GGFGLFLDP G P GR  + L   S           W P L SSS+  +  F  +
Sbjct: 63  GGFGLFLDPAGLPLGRLDIILSWSSPEPETRSLPPEWSPPLPSSSSPPRSLFGAL 117

[Close]

BLAST of Lsi04G009020.1 vs. ExPASy TrEMBL
Match: A0A2P5F511 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_111610 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 7.5e-16
Identity = 53/89 (59.55%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 87  PGAAGCRRVTLATTPFPLRTETPRCRRWAKLEMLSTMSVPLPISKTWLRRASGLSFVTTT 146
           PG AG RRVTL T P PL  +TPR RR AK+  LSTMS P  IS TW+RRA  LS V   
Sbjct: 3   PGEAGWRRVTLVTVPVPLMMQTPRWRRRAKVATLSTMSQPSAISMTWVRRALALSRVMMM 62

Query: 147 GGFGLFLDPGGRPRGRRVLELVPGSALSW 176
           GGFGLFLDP G P GR  L+++    LSW
Sbjct: 63  GGFGLFLDPAGLPLGR--LDII----LSW 85

[Close]

BLAST of Lsi04G009020.1 vs. ExPASy TrEMBL
Match: A0A7J6GYX6 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_021843 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.9e-15
Identity = 48/84 (57.14%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 80  PANVITPPGAAGCRRVTLATTPFPLRTETPRCRRWAKLEMLSTMSVPLPISKTWLRRASG 139
           P  V T P AAGCRRVT  T P PL T+ PRC   A +   S  S PLP SK W      
Sbjct: 26  PCRVTTAPAAAGCRRVTFVTVPLPLSTQIPRCLFRAYVATESNTSQPLPTSKMWALSVFA 85

Query: 140 LSFVTTTGGFGLFLDPGGRPRGRR 164
           LS V  TGG GLFLDPGGRP GRR
Sbjct: 86  LSRVMITGGLGLFLDPGGRPLGRR 109

[Close]

BLAST of Lsi04G009020.1 vs. NCBI nr
Match: PON57432.1 (hypothetical protein PanWU01x14_173380 [Parasponia andersonii])

HSP 1 Score: 95.9 bits (237), Expect = 4.1e-16
Identity = 58/115 (50.43%), Postives = 65/115 (56.52%), Query Frame = 0


Query: 87  PGAAGCRRVTLATTPFPLRTETPRCRRWAKLEMLSTMSVPLPISKTWLRRASGLSFVTTT 146
           PG AG RRVTL T P PL  +TPR RR AK+  LSTMS P  IS TW+RRA  LS V   
Sbjct: 3   PGEAGWRRVTLVTVPVPLMMQTPRWRRRAKVATLSTMSQPSAISMTWVRRALALSRVMMM 62

Query: 147 GGFGLFLDPGGRPRGRRVLELVPGS--------ALSWLPELFSSSAASKLCFNGV 194
           GGFGLFLDP G P GR  + L   S           W P L SSS+  +  F  +
Sbjct: 63  GGFGLFLDPAGLPLGRLDIILSWSSPEPETRSLPPEWSPPLPSSSSPPRSLFGAL 117

[Close]

BLAST of Lsi04G009020.1 vs. NCBI nr
Match: PON92882.1 (hypothetical protein TorRG33x02_111610 [Trema orientale])

HSP 1 Score: 94.0 bits (232), Expect = 1.5e-15
Identity = 53/89 (59.55%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 87  PGAAGCRRVTLATTPFPLRTETPRCRRWAKLEMLSTMSVPLPISKTWLRRASGLSFVTTT 146
           PG AG RRVTL T P PL  +TPR RR AK+  LSTMS P  IS TW+RRA  LS V   
Sbjct: 3   PGEAGWRRVTLVTVPVPLMMQTPRWRRRAKVATLSTMSQPSAISMTWVRRALALSRVMMM 62

Query: 147 GGFGLFLDPGGRPRGRRVLELVPGSALSW 176
           GGFGLFLDP G P GR  L+++    LSW
Sbjct: 63  GGFGLFLDPAGLPLGR--LDII----LSW 85

[Close]

BLAST of Lsi04G009020.1 vs. NCBI nr
Match: KAF4388147.1 (hypothetical protein G4B88_021843 [Cannabis sativa])

HSP 1 Score: 91.3 bits (225), Expect = 1.0e-14
Identity = 48/84 (57.14%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 80  PANVITPPGAAGCRRVTLATTPFPLRTETPRCRRWAKLEMLSTMSVPLPISKTWLRRASG 139
           P  V T P AAGCRRVT  T P PL T+ PRC   A +   S  S PLP SK W      
Sbjct: 26  PCRVTTAPAAAGCRRVTFVTVPLPLSTQIPRCLFRAYVATESNTSQPLPTSKMWALSVFA 85

Query: 140 LSFVTTTGGFGLFLDPGGRPRGRR 164
           LS V  TGG GLFLDPGGRP GRR
Sbjct: 86  LSRVMITGGLGLFLDPGGRPLGRR 109

[Close]

BLAST of Lsi04G009020.1 vs. NCBI nr
Match: KAG6549484.1 (hypothetical protein Mapa_009020 [Marchantia paleacea])

HSP 1 Score: 81.6 bits (200), Expect = 8.0e-12
Identity = 46/84 (54.76%), Postives = 48/84 (57.14%), Query Frame = 0


Query: 80  PANVITPPGAAGCRRVTLATTPFPLRTETPRCRRWAKLEMLSTMSVPLPISKTWLRRASG 139
           P  V   PGAAGCR VTLAT P P  T TPRC   AK   LS  S+P   SKTW      
Sbjct: 26  PWKVTVAPGAAGCRSVTLATVPLPPSTHTPRCLLLAKAATLSPTSLPPCTSKTWGLMPLP 85

Query: 140 LSFVTTTGGFGLFLDPGGRPRGRR 164
           +S V   GG GLF DPGG PRG R
Sbjct: 86  VSRVIYIGGLGLFFDPGGLPRGLR 109

[Close]

BLAST of Lsi04G009020.1 vs. NCBI nr
Match: PON73470.1 (hypothetical protein TorRG33x02_249530, partial [Trema orientale])

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-11
Identity = 49/101 (48.51%), Postives = 52/101 (51.49%), Query Frame = 0


Query: 66  SAPTTMPPTTCPCPPANVITPP-----------------------------GAAGCRRVT 125
           S PTT+PPTTCPCPPA  +  P                             GA G R VT
Sbjct: 2   SGPTTLPPTTCPCPPARYMVSPVDPGGAGPGRKAPVRERISKRPCRAMTELGAEGWRSVT 61

Query: 126 LATTPFPLRTETPRCRRWAKLEMLSTMSVPLPISKTWLRRA 138
           L T P PLRT+TPR RR AK   LS MS PL IS TWLRRA
Sbjct: 62  LVTVPLPLRTQTPRWRRLAKCATLSAMSAPLAISMTWLRRA 102

The following BLAST results are available for this feature:

BLAST of Lsi04G009020.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi04G009020.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A9F391	3.0e-25	55.56	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]
A0A0A9S0X7	4.4e-24	54.81	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]
A0A2P5C8P9	2.0e-16	50.43	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_173380 PE...	[more]
A0A2P5F511	7.5e-16	59.55	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_111610 PE=4 SV...	[more]
A0A7J6GYX6	4.9e-15	57.14	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_021843 PE=4 SV=1	[more]

BLAST of Lsi04G009020.1 vs. NCBI nr


Match Name	E-value	Identity	Description
PON57432.1	4.1e-16	50.43	hypothetical protein PanWU01x14_173380 [Parasponia andersonii]	[more]
PON92882.1	1.5e-15	59.55	hypothetical protein TorRG33x02_111610 [Trema orientale]	[more]
KAF4388147.1	1.0e-14	57.14	hypothetical protein G4B88_021843 [Cannabis sativa]	[more]
KAG6549484.1	8.0e-12	54.76	hypothetical protein Mapa_009020 [Marchantia paleacea]	[more]
PON73470.1	1.4e-11	48.51	hypothetical protein TorRG33x02_249530, partial [Trema orientale]	[more]

BLAST of Lsi04G009020.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..45

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi04G009020	Lsi04G009020	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi04G009020.1.exon.1	Lsi04G009020.1.exon.1	exon
Lsi04G009020.1.exon.2	Lsi04G009020.1.exon.2	exon
Lsi04G009020.1.exon.3	Lsi04G009020.1.exon.3	exon
Lsi04G009020.1.exon.4	Lsi04G009020.1.exon.4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi04G009020.1.CDS.1	Lsi04G009020.1.CDS.1	CDS
Lsi04G009020.1.CDS.2	Lsi04G009020.1.CDS.2	CDS
Lsi04G009020.1.CDS.3	Lsi04G009020.1.CDS.3	CDS
Lsi04G009020.1.CDS.4	Lsi04G009020.1.CDS.4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi04G009020.1	Lsi04G009020.1-protein	polypeptide