Lsi03G003790.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi03G003790.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRibosome-recycling factor, chloroplastic
Locationchr03: 4434027 .. 4436865 (+)
Sequence length1242
RNA-Seq ExpressionLsi03G003790.1
SyntenyLsi03G003790.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTGTTGTCACCGTTGGGGTTTACGAAAAACCCTAATCAGAAATCATAGCAAGCATCCAAATGAAGAATTAAGTTCGGGGGTTCGATCGGTTCGAGCATGAACGTCTAGTTCAATGGCTATGTTTCTGAAACGTTCCTTCTCCTACAGAAATTTCATCATTCTCCGAAATTTTGCAAATCCAAGTTGTAAAATTTCGTTCATTGTCAACGATCTCCCCAACTCATGGACATCCGAGACGCCTGCCGTATTTCCTCTTCCTCCTTCAGATTTTATCCGAGAAAGTCGTAGGGGTTTTGCTAAAGGCCGAAAATCAAGTAATCGTCTTTCCATCTCTTATTACACTTAATCTTCTACTCAGTATTCTACCTTTCTCTTAATCTTGTTGAATATATTGTTCTTGTTTCTCCTGCTTCTTATAAGCTCCGGTTTTGAATTGCTTTTATTTTTTCTACTGGGAAGATGATTCTTCTACAAGTATGGCCGAGGCATTGCCTGATATTAGACCCACTATTAAAGCAAACGCTAGCTCCCAGATGGAGGCTGCAATAGCTGCATTATCGGGAGAATTAAGCAAACTTCGAACGGGCAGGGCATCATCTGGTGATTGCTTACATTTTCTTATACATTATGTTCCATTTACACTTAAAGGTTTTATTGTCTTAGCCTGCCCTTGTGATTGCTTACACTATCTTATACACTGTGTGTTTACAGGAATGCTTGACCACATTATAGTAGAAACTTCAGGTGTGAAGATGCCATTGAATCAGATCGCGGTTGTATCGGTCTTGGATCCAAAAACATTGTCAATAAATCCCTATGATCCTAATGTAATCAGCTTACAAAATCCTGTTCTTAAGTTATTTCTTCATTTTTCTTCATCATGGTTAATTTCTCGGGTTCATTGATTGTTTGTGGTAAGGAGTACATGGACCTGTTTGGATTGGCTTTTTAACTGCTTAAAAAGATTTCTCTGAGTACTTAGAAATTCAATCCAAACATTCCTATATTGTGAAGTTCACTTAACAGAGCAAATGTTGCTATAATTTTCAATTTTTCATCTTTTGCAATTCTTGAATTATATTATATCGAGTTATGCTTTATTAGAGTATTGTCATTAGAGTATTGTCATTATCGTAACAAGGTTCTTGTTTCTACTCTACCTGACGTGAGAATTTGTATACACCTTCGGCATATCTGTTAGAGTTCTTAGATGAAAAGGTGTATCTGAAATGTGATACTTATGATAATTACTCTTCTATGCAGACACTAAAGAATTTAGAGAGTGCTATAGTCTCATCTCCTTTAGGTCTAGCACCAAGAGTAGATGGAGAGAGGTTAATTGCAGTCATTCCACCGTAAGCTTTCATGTTGCTCTTCCACTGTCTATATGGCTGTTGTTTAAATATAAAAGCTTATCGTATCTGTGAGTTAACACTTTTGACCAATATTATTTCCTGATTTTTCTTTTTGATGCTTGCTATACCAGATTGACCAAAGAACATATCCAGGTAATCTCCTAATTATTTTTTCTCTCTCCTTTTTGTTCTTTTCTTTTTTTCTATAATGCCTATTGCCTACATGGTGGATGTTTTTCTAGGCCATGTGTAAGCTGGTCACCAAGTGTTGCGAAGATTCCAGACAAAGCATACGACGAGCTCGTCAAAAGGTTATTTTAGCTAATCTTCACTTTACAAATTTCTTTTTCAGAAATCTTTACAAGTAATCATCTAGAGCATAAAAAATTTGAACAGTTCTTATTGTTTCGTGAAGTACCTTGTGTGGTAAGTTCAATAGTTGTAGAAGTCCCAAGAGGCCAAGATTTCCTTTAGTCAGTGTTATTTTTGTGACACTTACCTCATCTATTACTTTGTATCCAAAACAACAAAGTTTCTTGTTAGCTAACAAGATAACCCCAGCTTAACTTCACCCGAATGGTCGTGAAGTCATTATGTTAATACCACAAACTCTTATTTTTCCTTGAGAACAGGAAACAAATGGTTATCAAACGAAATTTTATTTGTTTTTTTGTTCTTTAGAACTTGTTTTTACCAGTTAATTCATTTATTTCCTTTCTTCCAACTGTTTCTAAATCAATTACTAACTGATATTGCAAATTCCCAGGTTCCAAATCAATGCTGTGGTTTCATTTGTGTGTATGAAAAGTTGGATTAATGTCGATTTGGAATGATTTTCTAAGTTCTTAAAAATGTGTTTTTAAGAGCACTTAAAAATTCATTCCAAACAGATTTTTAGTCTTCATATAGTCCTAGGTGTTAGCAAGTGTGTCGTAAAAGGACTTTATTTGACTATCCACATTATTTTATAGAATTTTGAGTTGATTGGTGGTTGTTTCACAGGCCATGGATACAGTTAAAAAAATGAGCTCAAGCTACCCGAAGGATGACATGAAAAGACTGGAAAAGGAAGTGAGTTGAAGAAGTTGAACCTAATCAAATCATATTTCAAACTTGCTTTTTATTAACTAAATATTGTTACGTTTCTGCTTCCAGGTAGATGAATTGACTAAGAAGTTTATCAAGTCAGCCGAAGATATCTGCAAGGCAAAGGAGAAGGAGATCACTGGAGGTTAAATGTTTGAAAGAAAAAAAAAATTAGTAGTTCCCAGTTTTGACAGATGAATCACTCAAATAATTATTGTATTTTTTTTTTCAATTCAGCCGTCCCATTATAGAGTTTTTCATAGTCATATCGAGGGATGTAACAGTGAGATGAGTGTATCTGTCATACTTCGAGACATTGAATCAATCCAATTGGATTTTACAATAGATGGATGTTGAATGGTCGATTCAATATTATTTACTATTTCAATTATTTTCA

mRNA sequence

CCTGTTGTCACCGTTGGGGTTTACGAAAAACCCTAATCAGAAATCATAGCAAGCATCCAAATGAAGAATTAAGTTCGGGGGTTCGATCGGTTCGAGCATGAACGTCTAGTTCAATGGCTATGTTTCTGAAACGTTCCTTCTCCTACAGAAATTTCATCATTCTCCGAAATTTTGCAAATCCAAGTTGTAAAATTTCGTTCATTGTCAACGATCTCCCCAACTCATGGACATCCGAGACGCCTGCCGTATTTCCTCTTCCTCCTTCAGATTTTATCCGAGAAAGTCGTAGGGGTTTTGCTAAAGGCCGAAAATCAAATGATTCTTCTACAAGTATGGCCGAGGCATTGCCTGATATTAGACCCACTATTAAAGCAAACGCTAGCTCCCAGATGGAGGCTGCAATAGCTGCATTATCGGGAGAATTAAGCAAACTTCGAACGGGCAGGGCATCATCTGGAATGCTTGACCACATTATAGTAGAAACTTCAGGTGTGAAGATGCCATTGAATCAGATCGCGGTTGTATCGGTCTTGGATCCAAAAACATTGTCAATAAATCCCTATGATCCTAATGTAATCAGCTTACAAAATCCTGTTCTTAAAGTATTGTCATTAGAGTATTGTCATTATCGTAACAAGGTTCTTGTTTCTACTCTACCTGACACACTAAAGAATTTAGAGAGTGCTATAGTCTCATCTCCTTTAGGTCTAGCACCAAGAGTAGATGGAGAGAGGTTAATTGCAGTCATTCCACCATTGACCAAAGAACATATCCAGGCCATGTGTAAGCTGGTCACCAAGTGTTGCGAAGATTCCAGACAAAGCATACGACGAGCTCGTCAAAAGGCCATGGATACAGTTAAAAAAATGAGCTCAAGCTACCCGAAGGATGACATGAAAAGACTGGAAAAGGAAGTAGATGAATTGACTAAGAAGTTTATCAAGTCAGCCGAAGATATCTGCAAGGCAAAGGAGAAGGAGATCACTGGAGGTTAAATGTTTGAAAGAAAAAAAAAATTAGTAGTTCCCAGTTTTGACAGATGAATCACTCAAATAATTATTGTATTTTTTTTTTCAATTCAGCCGTCCCATTATAGAGTTTTTCATAGTCATATCGAGGGATGTAACAGTGAGATGAGTGTATCTGTCATACTTCGAGACATTGAATCAATCCAATTGGATTTTACAATAGATGGATGTTGAATGGTCGATTCAATATTATTTACTATTTCAATTATTTTCA

Coding sequence (CDS)

ATGGCTATGTTTCTGAAACGTTCCTTCTCCTACAGAAATTTCATCATTCTCCGAAATTTTGCAAATCCAAGTTGTAAAATTTCGTTCATTGTCAACGATCTCCCCAACTCATGGACATCCGAGACGCCTGCCGTATTTCCTCTTCCTCCTTCAGATTTTATCCGAGAAAGTCGTAGGGGTTTTGCTAAAGGCCGAAAATCAAATGATTCTTCTACAAGTATGGCCGAGGCATTGCCTGATATTAGACCCACTATTAAAGCAAACGCTAGCTCCCAGATGGAGGCTGCAATAGCTGCATTATCGGGAGAATTAAGCAAACTTCGAACGGGCAGGGCATCATCTGGAATGCTTGACCACATTATAGTAGAAACTTCAGGTGTGAAGATGCCATTGAATCAGATCGCGGTTGTATCGGTCTTGGATCCAAAAACATTGTCAATAAATCCCTATGATCCTAATGTAATCAGCTTACAAAATCCTGTTCTTAAAGTATTGTCATTAGAGTATTGTCATTATCGTAACAAGGTTCTTGTTTCTACTCTACCTGACACACTAAAGAATTTAGAGAGTGCTATAGTCTCATCTCCTTTAGGTCTAGCACCAAGAGTAGATGGAGAGAGGTTAATTGCAGTCATTCCACCATTGACCAAAGAACATATCCAGGCCATGTGTAAGCTGGTCACCAAGTGTTGCGAAGATTCCAGACAAAGCATACGACGAGCTCGTCAAAAGGCCATGGATACAGTTAAAAAAATGAGCTCAAGCTACCCGAAGGATGACATGAAAAGACTGGAAAAGGAAGTAGATGAATTGACTAAGAAGTTTATCAAGTCAGCCGAAGATATCTGCAAGGCAAAGGAGAAGGAGATCACTGGAGGTTAA

Protein sequence

MAMFLKRSFSYRNFIILRNFANPSCKISFIVNDLPNSWTSETPAVFPLPPSDFIRESRRGFAKGRKSNDSSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHIIVETSGVKMPLNQIAVVSVLDPKTLSINPYDPNVISLQNPVLKVLSLEYCHYRNKVLVSTLPDTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDICKAKEKEITGG
Homology
[Close]
BLAST of Lsi03G003790.1 vs. ExPASy Swiss-Prot
Match: Q39W85 (Ribosome-recycling factor OS=Geobacter metallireducens (strain ATCC 53774 / DSM 7210 / GS-15) OX=269799 GN=frr PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.2e-22
Identity = 69/206 (33.50%), Postives = 115/206 (55.83%), Query Frame = 0 

Query: 87  ANASSQMEAAIAALSGELSKLRTGRASSGMLDHIIVETSGVKMPLNQIAVVSVLDPKTLS 146
           A+  + ME ++ AL  E  K+RTGRA++G+LD I VE  G   PL+Q+A +SV +P+T++
Sbjct: 7   ADMKAHMEKSVDALRREYQKVRTGRATTGLLDDIKVEYYGNPSPLSQVATLSVPEPRTIT 66

Query: 147 INPYDPNVISLQNPVLKVLSLEYCHYRNKVLVSTLPDTLKNLESAIVSSPLGLAPRVDGE 206
           I P++  +I    PV                          +E AI+++ LG  P  DG+
Sbjct: 67  IQPWEAKLI----PV--------------------------IEKAIMNANLGFTPANDGK 126

Query: 207 RLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKM--SSSYPKDDMKRL 266
            +   +PPLT+E  + + K + K  ED++ ++R  R+  +D++KK+       +DD+KR 
Sbjct: 127 TIRISLPPLTEERRKEIVKTLKKMAEDTKVAVRNIRRDGIDSLKKLEKDKKISEDDLKRA 182

Query: 267 EKEVDELTKKFIKSAEDICKAKEKEI 291
           EKEV ++T  F+   E++   KEKE+
Sbjct: 187 EKEVQDVTNTFVAKVEEVLTHKEKEV 182

[Close]
BLAST of Lsi03G003790.1 vs. ExPASy Swiss-Prot
Match: Q3A398 (Ribosome-recycling factor OS=Pelobacter carbinolicus (strain DSM 2380 / NBRC 103641 / GraBd1) OX=338963 GN=frr PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.1e-22
Identity = 67/204 (32.84%), Postives = 113/204 (55.39%), Query Frame = 0 

Query: 89  ASSQMEAAIAALSGELSKLRTGRASSGMLDHIIVETSGVKMPLNQIAVVSVLDPKTLSIN 148
           A S M+ A+ +L  +++K+RTGRAS+ +LD ++V+  G   PLNQ+  ++V +P+ ++I 
Sbjct: 9   ARSGMDKAVESLKKDMTKVRTGRASTSLLDDVMVDYYGTPTPLNQVGTLAVPEPRLITIQ 68

Query: 149 PYDPNVISLQNPVLKVLSLEYCHYRNKVLVSTLPDTLKNLESAIVSSPLGLAPRVDGERL 208
           P++  +                              L ++E AI  + LGL P  DG  +
Sbjct: 69  PWEKKL------------------------------LADIERAIFKADLGLNPTSDGNLI 128

Query: 209 IAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKM--SSSYPKDDMKRLEK 268
             VIPP+T+E  + M K+V K  ED++  +R AR+ A D +KK+  +    +DD+KR EK
Sbjct: 129 RLVIPPMTEERRKEMGKVVRKMGEDAKVGVRSARRDANDGMKKLEKNKEISEDDLKRGEK 182

Query: 269 EVDELTKKFIKSAEDICKAKEKEI 291
           E+ ++T  ++   +D+   KEKEI
Sbjct: 189 EIQDVTDSYVAKIDDLVSQKEKEI 182

[Close]
BLAST of Lsi03G003790.1 vs. ExPASy Swiss-Prot
Match: Q9KA66 (Ribosome-recycling factor OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=frr PE=3 SV=3)

HSP 1 Score: 107.5 bits (267), Expect = 2.7e-22
Identity = 74/205 (36.10%), Postives = 109/205 (53.17%), Query Frame = 0 

Query: 88  NASSQMEAAIAALSGELSKLRTGRASSGMLDHIIVETSGVKMPLNQIAVVSVLDPKTLSI 147
           +A  +M  A  AL  EL+KLR GRA+  MLD I VE  G + PLNQ+A +SV + + L I
Sbjct: 8   DAEQRMTKATEALGRELAKLRAGRANPAMLDRITVEYYGAETPLNQLATISVPEARLLVI 67

Query: 148 NPYDPNVISLQNPVLKVLSLEYCHYRNKVLVSTLPDTLKNLESAIVSSPLGLAPRVDGER 207
            P+D + IS                              ++E AI  S LGL P  DG  
Sbjct: 68  QPFDKSSIS------------------------------DIERAIQKSDLGLTPSNDGTV 127

Query: 208 LIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKK--MSSSYPKDDMKRLE 267
           +   IPPLT+E  + + KLV K  E+++ ++R  R+ A D +KK        +DD++R+ 
Sbjct: 128 IRITIPPLTEERRRDLTKLVKKSAEEAKVAVRNIRRDANDDLKKRQKDGELTEDDLRRVT 182

Query: 268 KEVDELTKKFIKSAEDICKAKEKEI 291
           ++V +LT K+I+  +   +AKEKEI
Sbjct: 188 EDVQKLTDKYIEQIDQKAEAKEKEI 182

[Close]
BLAST of Lsi03G003790.1 vs. ExPASy Swiss-Prot
Match: A4IMC6 (Ribosome-recycling factor OS=Geobacillus thermodenitrificans (strain NG80-2) OX=420246 GN=frr PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.6e-22
Identity = 70/204 (34.31%), Postives = 111/204 (54.41%), Query Frame = 0 

Query: 89  ASSQMEAAIAALSGELSKLRTGRASSGMLDHIIVETSGVKMPLNQIAVVSVLDPKTLSIN 148
           A  +M+ A+ A S EL+ +R GRA++G+L+ + V+  GV  P+NQ+A +SV + + L I 
Sbjct: 9   AKEKMDKAVQAFSRELATVRAGRANAGLLEKVTVDYYGVATPINQLATISVPEARMLVIQ 68

Query: 149 PYDPNVISLQNPVLKVLSLEYCHYRNKVLVSTLPDTLKNLESAIVSSPLGLAPRVDGERL 208
           PYD +VI                              K +E AI++S LG+ P  DG  +
Sbjct: 69  PYDKSVI------------------------------KEMEKAILASDLGVTPSNDGSVI 128

Query: 209 IAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKM--SSSYPKDDMKRLEK 268
             VIPPLT+E  + + KLV K  E+++ ++R  R+ A D +KK+  +S   +D+++    
Sbjct: 129 RLVIPPLTEERRRELAKLVKKYSEEAKVAVRNIRRDANDELKKLEKNSEITEDELRSYTD 182

Query: 269 EVDELTKKFIKSAEDICKAKEKEI 291
           EV +LT   I   + I K KEKE+
Sbjct: 189 EVQKLTDSHIAKIDAITKEKEKEV 182

[Close]
BLAST of Lsi03G003790.1 vs. ExPASy Swiss-Prot
Match: A5G7W5 (Ribosome-recycling factor OS=Geobacter uraniireducens (strain Rf4) OX=351605 GN=frr PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.6e-22
Identity = 69/205 (33.66%), Postives = 113/205 (55.12%), Query Frame = 0 

Query: 88  NASSQMEAAIAALSGELSKLRTGRASSGMLDHIIVETSGVKMPLNQIAVVSVLDPKTLSI 147
           N S+ M+  I AL  E  ++RTGRAS+G+LD I V+  G   P+NQ+A ++V +P+T+++
Sbjct: 8   NMSTHMDKTIDALRKEYQRVRTGRASTGLLDEIKVDFYGTPSPINQVATLAVPEPRTITL 67

Query: 148 NPYDPNVISLQNPVLKVLSLEYCHYRNKVLVSTLPDTLKNLESAIVSSPLGLAPRVDGER 207
            P+D  +I    PV                          +E AI+++ LGL P  DG+ 
Sbjct: 68  QPWDAKMI----PV--------------------------IEKAIMNANLGLTPANDGKV 127

Query: 208 LIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKM--SSSYPKDDMKRLE 267
           +   IPPLT+E  + + K + K  ED++ ++R  R+ A+D +KK        +DD+KR E
Sbjct: 128 IRLNIPPLTEERRKDIVKQLKKLAEDAKVAVRNIRRDAIDELKKQEKDKKISEDDLKRAE 182

Query: 268 KEVDELTKKFIKSAEDICKAKEKEI 291
           KEV ++T   +   +++   KEKE+
Sbjct: 188 KEVQDVTNSHVAKIDEVFVHKEKEV 182

[Close]
BLAST of Lsi03G003790.1 vs. ExPASy TrEMBL
Match: A0A6J1JKE4 (Ribosome-recycling factor, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487708 PE=3 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 2.0e-121
Identity = 243/293 (82.94%), Postives = 250/293 (85.32%), Query Frame = 0 

Query: 1   MAMFLKRSFSYRNFIILRNFANPSCKISFIVNDLPNSWTSETPAVFPLPPSDFIRESRRG 60
           MAMFLKRSF YR+F++LRNFANPS   SF VNDL N WTSE P VF LPP+DFIRESRRG
Sbjct: 1   MAMFLKRSFFYRSFLLLRNFANPSRNFSFFVNDLCNPWTSEMPGVFALPPADFIRESRRG 60

Query: 61  FAKGRKSNDSSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI 120
           FAKGRKSN+SSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI
Sbjct: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI 120

Query: 121 IVETSGVKMPLNQIAVVSVLDPKTLSINPYDPNVISLQNPVLKVLSLEYCHYRNKVLVST 180
           IVE SGV+MPLNQIA VSVLD KTLSINPYDPN                           
Sbjct: 121 IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPN--------------------------- 180

Query: 181 LPDTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRR 240
              TLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRR
Sbjct: 181 ---TLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRR 240

Query: 241 ARQKAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDICKAKEKEITGG 294
           ARQKAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAED+CKAKEKEITGG
Sbjct: 241 ARQKAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG 263

[Close]
BLAST of Lsi03G003790.1 vs. ExPASy TrEMBL
Match: A0A6J1GLU1 (Ribosome-recycling factor, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111455524 PE=3 SV=1)

HSP 1 Score: 443.7 bits (1140), Expect = 5.8e-121
Identity = 242/293 (82.59%), Postives = 249/293 (84.98%), Query Frame = 0 

Query: 1   MAMFLKRSFSYRNFIILRNFANPSCKISFIVNDLPNSWTSETPAVFPLPPSDFIRESRRG 60
           MAMFLKRSFSYRNF++LRNFANPS   SF V DL N WTSE P  F LPP+DFIRESRRG
Sbjct: 1   MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRG 60

Query: 61  FAKGRKSNDSSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI 120
           FAKGRKSN+SSTSMAEALPDIRPTIKANASSQMEAAI+ALSGELSKLRTGRASSGMLDHI
Sbjct: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHI 120

Query: 121 IVETSGVKMPLNQIAVVSVLDPKTLSINPYDPNVISLQNPVLKVLSLEYCHYRNKVLVST 180
           IVE SGV+MPLNQIA VSVLD KTLSINPYDPN                           
Sbjct: 121 IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPN--------------------------- 180

Query: 181 LPDTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRR 240
              TLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRR
Sbjct: 181 ---TLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRR 240

Query: 241 ARQKAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDICKAKEKEITGG 294
           ARQKAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAED+CKAKEKEITGG
Sbjct: 241 ARQKAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG 263

[Close]
BLAST of Lsi03G003790.1 vs. ExPASy TrEMBL
Match: A0A5D3DLY3 (Ribosome-recycling factor, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00450 PE=3 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 7.9e-118
Identity = 235/293 (80.20%), Postives = 249/293 (84.98%), Query Frame = 0 

Query: 1   MAMFLKRSFSYRNFIILRNFANPSCKISFIVNDLPNSWTSETPAVFPLPPSDFIRESRRG 60
           MAMFLKRSFSYRNFIILRNFAN +C  SF +N   NSWTS+T A F LPPSDFIRESRRG
Sbjct: 1   MAMFLKRSFSYRNFIILRNFANQTCNFSFSLNHFSNSWTSDTSAGFALPPSDFIRESRRG 60

Query: 61  FAKGRKSNDSSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI 120
           FAKGRKSN+SSTS+AEAL DIRPTIK+NASSQMEA+I ALSGELSKLRTGRASSGMLDHI
Sbjct: 61  FAKGRKSNESSTSIAEALTDIRPTIKSNASSQMEASIVALSGELSKLRTGRASSGMLDHI 120

Query: 121 IVETSGVKMPLNQIAVVSVLDPKTLSINPYDPNVISLQNPVLKVLSLEYCHYRNKVLVST 180
           IVETSGVK+PLNQIA VSVLD KTLSINPYDP+                           
Sbjct: 121 IVETSGVKLPLNQIAAVSVLDSKTLSINPYDPS--------------------------- 180

Query: 181 LPDTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRR 240
              TLKNLESAI+SSPLG+APRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRR
Sbjct: 181 ---TLKNLESAIISSPLGVAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRR 240

Query: 241 ARQKAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDICKAKEKEITGG 294
           ARQKAMDTVKK+SSSYPKDDMKRLEKEVDELTKKFIKSAE++CKAKEKEITGG
Sbjct: 241 ARQKAMDTVKKISSSYPKDDMKRLEKEVDELTKKFIKSAEELCKAKEKEITGG 263

[Close]
BLAST of Lsi03G003790.1 vs. ExPASy TrEMBL
Match: A0A1S3B2S9 (Ribosome-recycling factor, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485499 PE=3 SV=1)

HSP 1 Score: 433.3 bits (1113), Expect = 7.9e-118
Identity = 235/293 (80.20%), Postives = 249/293 (84.98%), Query Frame = 0 

Query: 1   MAMFLKRSFSYRNFIILRNFANPSCKISFIVNDLPNSWTSETPAVFPLPPSDFIRESRRG 60
           MAMFLKRSFSYRNFIILRNFAN +C  SF +N   NSWTS+T A F LPPSDFIRESRRG
Sbjct: 1   MAMFLKRSFSYRNFIILRNFANQTCNFSFSLNHFSNSWTSDTSAGFALPPSDFIRESRRG 60

Query: 61  FAKGRKSNDSSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI 120
           FAKGRKSN+SSTS+AEAL DIRPTIK+NASSQMEA+I ALSGELSKLRTGRASSGMLDHI
Sbjct: 61  FAKGRKSNESSTSIAEALTDIRPTIKSNASSQMEASIVALSGELSKLRTGRASSGMLDHI 120

Query: 121 IVETSGVKMPLNQIAVVSVLDPKTLSINPYDPNVISLQNPVLKVLSLEYCHYRNKVLVST 180
           IVETSGVK+PLNQIA VSVLD KTLSINPYDP+                           
Sbjct: 121 IVETSGVKLPLNQIAAVSVLDSKTLSINPYDPS--------------------------- 180

Query: 181 LPDTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRR 240
              TLKNLESAI+SSPLG+APRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRR
Sbjct: 181 ---TLKNLESAIISSPLGVAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRR 240

Query: 241 ARQKAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDICKAKEKEITGG 294
           ARQKAMDTVKK+SSSYPKDDMKRLEKEVDELTKKFIKSAE++CKAKEKEITGG
Sbjct: 241 ARQKAMDTVKKISSSYPKDDMKRLEKEVDELTKKFIKSAEELCKAKEKEITGG 263

[Close]
BLAST of Lsi03G003790.1 vs. ExPASy TrEMBL
Match: A0A6J1BWU9 (Ribosome-recycling factor, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111006057 PE=3 SV=1)

HSP 1 Score: 431.4 bits (1108), Expect = 3.0e-117
Identity = 236/293 (80.55%), Postives = 247/293 (84.30%), Query Frame = 0 

Query: 1   MAMFLKRSFSYRNFIILRNFANPSCKISFIVNDLPNSWTSETPAVFPLPPSDFIRESRRG 60
           MAMFLKRS SYRNF++ RN A PS K SF VND   +WTSETP VF LPP+DFIRESRRG
Sbjct: 1   MAMFLKRSLSYRNFLLFRNSAVPSRKFSFFVNDPSIAWTSETPGVFALPPADFIRESRRG 60

Query: 61  FAKGRKSNDSSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI 120
           FAK RKSNDSSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI
Sbjct: 61  FAKARKSNDSSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI 120

Query: 121 IVETSGVKMPLNQIAVVSVLDPKTLSINPYDPNVISLQNPVLKVLSLEYCHYRNKVLVST 180
           IVETSG+KMPLNQIAVVSVLD KTLSINPYDPN                           
Sbjct: 121 IVETSGLKMPLNQIAVVSVLDSKTLSINPYDPN--------------------------- 180

Query: 181 LPDTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRR 240
              TLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHI A+CKLVTKCCEDSRQSIRR
Sbjct: 181 ---TLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHILAVCKLVTKCCEDSRQSIRR 240

Query: 241 ARQKAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDICKAKEKEITGG 294
           ARQKAMDT+KKM++SYPKDD+KRLEKEVDELTKKFIKSAED+CKAKEKEI GG
Sbjct: 241 ARQKAMDTIKKMNASYPKDDIKRLEKEVDELTKKFIKSAEDLCKAKEKEIAGG 263

[Close]
BLAST of Lsi03G003790.1 vs. NCBI nr
Match: XP_038885564.1 (ribosome-recycling factor isoform X1 [Benincasa hispida])

HSP 1 Score: 459.5 bits (1181), Expect = 2.1e-125
Identity = 252/293 (86.01%), Postives = 257/293 (87.71%), Query Frame = 0 

Query: 1   MAMFLKRSFSYRNFIILRNFANPSCKISFIVNDLPNSWTSETPAVFPLPPSDFIRESRRG 60
           MAMFLKRSFSYRNFIILRNFAN + K SFIVNDL NS TSETPAVF LPPSDF+RESRRG
Sbjct: 1   MAMFLKRSFSYRNFIILRNFANSNSKFSFIVNDLSNSSTSETPAVFALPPSDFVRESRRG 60

Query: 61  FAKGRKSNDSSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI 120
           FAKGRKSN+SSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI
Sbjct: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI 120

Query: 121 IVETSGVKMPLNQIAVVSVLDPKTLSINPYDPNVISLQNPVLKVLSLEYCHYRNKVLVST 180
           IVETSGVKMPLNQIAVVSVLDPKTLSINPYDPN                           
Sbjct: 121 IVETSGVKMPLNQIAVVSVLDPKTLSINPYDPN--------------------------- 180

Query: 181 LPDTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRR 240
              TLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQA+CKLVTKCCEDSRQSIRR
Sbjct: 181 ---TLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAICKLVTKCCEDSRQSIRR 240

Query: 241 ARQKAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDICKAKEKEITGG 294
           ARQKAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAED+CKAKEKEITGG
Sbjct: 241 ARQKAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG 263

[Close]
BLAST of Lsi03G003790.1 vs. NCBI nr
Match: XP_023544000.1 (uncharacterized protein LOC111803704 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 449.5 bits (1155), Expect = 2.2e-122
Identity = 244/293 (83.28%), Postives = 252/293 (86.01%), Query Frame = 0 

Query: 1   MAMFLKRSFSYRNFIILRNFANPSCKISFIVNDLPNSWTSETPAVFPLPPSDFIRESRRG 60
           MAMFLKRSFSYRNF++LRNFANPS  +SF VNDL NSWTSE P  F LPP+DFIRESRRG
Sbjct: 1   MAMFLKRSFSYRNFLLLRNFANPSRNLSFFVNDLCNSWTSEMPGAFALPPADFIRESRRG 60

Query: 61  FAKGRKSNDSSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI 120
           FAKGRKSN+SSTSMAEALPDIRPTIKANASSQMEAAI+ALSGELSKLRTGRASSGMLDHI
Sbjct: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHI 120

Query: 121 IVETSGVKMPLNQIAVVSVLDPKTLSINPYDPNVISLQNPVLKVLSLEYCHYRNKVLVST 180
           IVE SGV+MPLNQIA VSVLD KTLSINPYDPN                           
Sbjct: 121 IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPN--------------------------- 180

Query: 181 LPDTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRR 240
              TLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRR
Sbjct: 181 ---TLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRR 240

Query: 241 ARQKAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDICKAKEKEITGG 294
           ARQKAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAED+CKAKEKEITGG
Sbjct: 241 ARQKAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG 263

[Close]
BLAST of Lsi03G003790.1 vs. NCBI nr
Match: KAG7033363.1 (frr [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 446.8 bits (1148), Expect = 1.4e-121
Identity = 243/293 (82.94%), Postives = 250/293 (85.32%), Query Frame = 0 

Query: 1   MAMFLKRSFSYRNFIILRNFANPSCKISFIVNDLPNSWTSETPAVFPLPPSDFIRESRRG 60
           MAMFLKRSFSYRNF++LRNFANPS   SF VNDL N WTSE P  F LPP+DFIRESRRG
Sbjct: 1   MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVNDLCNPWTSEMPGAFALPPADFIRESRRG 60

Query: 61  FAKGRKSNDSSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI 120
           FAKGRKSN+SSTSMAEALPDIRPTIKANASSQMEAAI+ALSGELSKLRTGRASSGMLDHI
Sbjct: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHI 120

Query: 121 IVETSGVKMPLNQIAVVSVLDPKTLSINPYDPNVISLQNPVLKVLSLEYCHYRNKVLVST 180
           IVE SGV+MPLNQIA VSVLD KTLSINPYDPN                           
Sbjct: 121 IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPN--------------------------- 180

Query: 181 LPDTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRR 240
              TLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRR
Sbjct: 181 ---TLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRR 240

Query: 241 ARQKAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDICKAKEKEITGG 294
           ARQKAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAED+CKAKEKEITGG
Sbjct: 241 ARQKAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG 263

[Close]
BLAST of Lsi03G003790.1 vs. NCBI nr
Match: XP_022990977.1 (uncharacterized protein LOC111487708 [Cucurbita maxima])

HSP 1 Score: 445.3 bits (1144), Expect = 4.1e-121
Identity = 243/293 (82.94%), Postives = 250/293 (85.32%), Query Frame = 0 

Query: 1   MAMFLKRSFSYRNFIILRNFANPSCKISFIVNDLPNSWTSETPAVFPLPPSDFIRESRRG 60
           MAMFLKRSF YR+F++LRNFANPS   SF VNDL N WTSE P VF LPP+DFIRESRRG
Sbjct: 1   MAMFLKRSFFYRSFLLLRNFANPSRNFSFFVNDLCNPWTSEMPGVFALPPADFIRESRRG 60

Query: 61  FAKGRKSNDSSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI 120
           FAKGRKSN+SSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI
Sbjct: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI 120

Query: 121 IVETSGVKMPLNQIAVVSVLDPKTLSINPYDPNVISLQNPVLKVLSLEYCHYRNKVLVST 180
           IVE SGV+MPLNQIA VSVLD KTLSINPYDPN                           
Sbjct: 121 IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPN--------------------------- 180

Query: 181 LPDTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRR 240
              TLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRR
Sbjct: 181 ---TLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRR 240

Query: 241 ARQKAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDICKAKEKEITGG 294
           ARQKAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAED+CKAKEKEITGG
Sbjct: 241 ARQKAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG 263

[Close]
BLAST of Lsi03G003790.1 vs. NCBI nr
Match: KAG6602677.1 (hypothetical protein SDJN03_07910, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 443.7 bits (1140), Expect = 1.2e-120
Identity = 242/293 (82.59%), Postives = 249/293 (84.98%), Query Frame = 0 

Query: 1   MAMFLKRSFSYRNFIILRNFANPSCKISFIVNDLPNSWTSETPAVFPLPPSDFIRESRRG 60
           MAMFLKRSFSYRNF++LRNFANPS   SF VNDL N WTSE P  F LP +DFIRESRRG
Sbjct: 1   MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVNDLCNPWTSEMPGAFALPSADFIRESRRG 60

Query: 61  FAKGRKSNDSSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI 120
           FAKGRKSN+SSTSMAEALPDIRPTIKANASSQMEAAI+ALSGELSKLRTGRASSGMLDHI
Sbjct: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHI 120

Query: 121 IVETSGVKMPLNQIAVVSVLDPKTLSINPYDPNVISLQNPVLKVLSLEYCHYRNKVLVST 180
           IVE SGV+MPLNQIA VSVLD KTLSINPYDPN                           
Sbjct: 121 IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPN--------------------------- 180

Query: 181 LPDTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRR 240
              TLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRR
Sbjct: 181 ---TLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRR 240

Query: 241 ARQKAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDICKAKEKEITGG 294
           ARQKAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAED+CKAKEKEITGG
Sbjct: 241 ARQKAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG 263

[Close]
BLAST of Lsi03G003790.1 vs. TAIR 10
Match: AT3G01800.1 (Ribosome recycling factor )

HSP 1 Score: 296.6 bits (758), Expect = 2.2e-80
Identity = 176/296 (59.46%), Postives = 210/296 (70.95%), Query Frame = 0 

Query: 1   MAMFLKRSFSYRN---FIILRNFANPSCKISFIVNDLPN-SWTSETPAVFPLPPSDFIRE 60
           MAMF++R+ S RN   F+   +    S   SFI +  PN          F L   DF+R+
Sbjct: 2   MAMFVRRALSSRNAIGFLRRSSVVVQSRDFSFISS--PNLMMMGGRDLQFDLSMPDFLRD 61

Query: 61  SRRGFAKGRKS-NDSSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSG 120
           SRRGFAKG+KS +DS T M +A PDI PT+KA ASSQMEAAI ALS +L+KLRTGRA+ G
Sbjct: 62  SRRGFAKGKKSKDDSGTGMVDAAPDIGPTVKAAASSQMEAAIDALSRDLTKLRTGRAAPG 121

Query: 121 MLDHIIVETSGVKMPLNQIAVVSVLDPKTLSINPYDPNVISLQNPVLKVLSLEYCHYRNK 180
           MLDHI+VET GVKMPLN +A+VSVLDPKTLS+NPYD                        
Sbjct: 122 MLDHIVVETGGVKMPLNHLALVSVLDPKTLSVNPYD------------------------ 181

Query: 181 VLVSTLPDTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSR 240
                 PDT+K LE AIV+SPLGL P++DG+RL+A IP LTKEHIQAMCK+VTK  E  +
Sbjct: 182 ------PDTVKELEKAIVASPLGLNPKLDGQRLVASIPALTKEHIQAMCKIVTKSSEVVK 241

Query: 241 QSIRRARQKAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDICKAKEKEIT 292
           QSIRRARQKA+DT+KK  SS PKD++KRLEKEVDELTKKF+KSAED+CK+KEKEIT
Sbjct: 242 QSIRRARQKALDTIKKAGSSLPKDEVKRLEKEVDELTKKFVKSAEDMCKSKEKEIT 265

[Close]
BLAST of Lsi03G003790.1 vs. TAIR 10
Match: AT3G63190.1 (ribosome recycling factor, chloroplast precursor )

HSP 1 Score: 86.7 bits (213), Expect = 3.5e-17
Identity = 61/211 (28.91%), Postives = 105/211 (49.76%), Query Frame = 0 

Query: 82  RPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHIIVETSGVKMPLNQIAVVSVLD 141
           +  I+ +  S+ME  I  L    + +RTGR+++ MLD I VE  G  + L  IA +S  D
Sbjct: 92  KSAIETDVKSKMEKTIETLRTSFNSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPD 151

Query: 142 PKTLSINPYDPNVISLQNPVLKVLSLEYCHYRNKVLVSTLPDTLKNLESAIVSSPLGLAP 201
             +L + PYD +                              +LK +E AIV+S LG+ P
Sbjct: 152 GSSLLLQPYDKS------------------------------SLKAIEKAIVNSDLGVTP 211

Query: 202 RVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKAMDTVKKM--SSSYPKD 261
             DG+ +   +PPLT +  + + K+V K  E+ + ++R  R+ A+ +  K+       +D
Sbjct: 212 NNDGDVIRLSLPPLTSDRRKELSKVVAKQSEEGKVALRNIRRDALKSYDKLEKEKKLSED 271

Query: 262 DMKRLEKEVDELTKKFIKSAEDICKAKEKEI 291
           ++K L  ++ +L   ++K  E++ K KEKE+
Sbjct: 272 NVKDLSSDLQKLIDVYMKKIEELYKQKEKEL 272

The following BLAST results are available for this feature:
BLAST of Lsi03G003790.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q39W851.2e-2233.50Ribosome-recycling factor OS=Geobacter metallireducens (strain ATCC 53774 / DSM ... [more]
Q3A3982.1e-2232.84Ribosome-recycling factor OS=Pelobacter carbinolicus (strain DSM 2380 / NBRC 103... [more]
Q9KA662.7e-2236.10Ribosome-recycling factor OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 1819... [more]
A4IMC64.6e-2234.31Ribosome-recycling factor OS=Geobacillus thermodenitrificans (strain NG80-2) OX=... [more]
A5G7W54.6e-2233.66Ribosome-recycling factor OS=Geobacter uraniireducens (strain Rf4) OX=351605 GN=... [more]
BLAST of Lsi03G003790.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JKE42.0e-12182.94Ribosome-recycling factor, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A6J1GLU15.8e-12182.59Ribosome-recycling factor, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A5D3DLY37.9e-11880.20Ribosome-recycling factor, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A1S3B2S97.9e-11880.20Ribosome-recycling factor, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485499... [more]
A0A6J1BWU93.0e-11780.55Ribosome-recycling factor, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11... [more]
BLAST of Lsi03G003790.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038885564.12.1e-12586.01ribosome-recycling factor isoform X1 [Benincasa hispida][more]
XP_023544000.12.2e-12283.28uncharacterized protein LOC111803704 [Cucurbita pepo subsp. pepo][more]
KAG7033363.11.4e-12182.94frr [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022990977.14.1e-12182.94uncharacterized protein LOC111487708 [Cucurbita maxima][more]
KAG6602677.11.2e-12082.59hypothetical protein SDJN03_07910, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lsi03G003790.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G01800.12.2e-8059.46Ribosome recycling factor [more]
AT3G63190.13.5e-1728.91ribosome recycling factor, chloroplast precursor [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 261..281
NoneNo IPR availableGENE3D3.30.1360.40coord: 110..157
e-value: 1.0E-12
score: 49.6
NoneNo IPR availablePANTHERPTHR20982:SF12OSJNBA0076N16.8 PROTEINcoord: 1..155
NoneNo IPR availablePANTHERPTHR20982:SF12OSJNBA0076N16.8 PROTEINcoord: 182..292
IPR023584Ribosome recycling factor domainPFAMPF01765RRFcoord: 181..290
e-value: 9.2E-34
score: 116.7
coord: 101..155
e-value: 2.7E-15
score: 56.6
IPR036191RRF superfamilyGENE3D1.10.132.20coord: 170..293
e-value: 1.1E-29
score: 104.8
IPR036191RRF superfamilySUPERFAMILY55194Ribosome recycling factor, RRFcoord: 84..291
IPR002661Ribosome recycling factorPANTHERPTHR20982RIBOSOME RECYCLING FACTORcoord: 182..292
IPR002661Ribosome recycling factorPANTHERPTHR20982RIBOSOME RECYCLING FACTORcoord: 1..155

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi03G003790Lsi03G003790gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi03G003790.1.exon.1Lsi03G003790.1.exon.1exon
Lsi03G003790.1.exon.2Lsi03G003790.1.exon.2exon
Lsi03G003790.1.exon.3Lsi03G003790.1.exon.3exon
Lsi03G003790.1.exon.4Lsi03G003790.1.exon.4exon
Lsi03G003790.1.exon.5Lsi03G003790.1.exon.5exon
Lsi03G003790.1.exon.6Lsi03G003790.1.exon.6exon
Lsi03G003790.1.exon.7Lsi03G003790.1.exon.7exon
Lsi03G003790.1.exon.8Lsi03G003790.1.exon.8exon
Lsi03G003790.1.exon.9Lsi03G003790.1.exon.9exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi03G003790.1.five_prime_UTR.1Lsi03G003790.1.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi03G003790.1.CDS.1Lsi03G003790.1.CDS.1CDS
Lsi03G003790.1.CDS.2Lsi03G003790.1.CDS.2CDS
Lsi03G003790.1.CDS.3Lsi03G003790.1.CDS.3CDS
Lsi03G003790.1.CDS.4Lsi03G003790.1.CDS.4CDS
Lsi03G003790.1.CDS.5Lsi03G003790.1.CDS.5CDS
Lsi03G003790.1.CDS.6Lsi03G003790.1.CDS.6CDS
Lsi03G003790.1.CDS.7Lsi03G003790.1.CDS.7CDS
Lsi03G003790.1.CDS.8Lsi03G003790.1.CDS.8CDS
Lsi03G003790.1.CDS.9Lsi03G003790.1.CDS.9CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi03G003790.1.three_prime_UTR.1Lsi03G003790.1.three_prime_UTR.1three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi03G003790.1Lsi03G003790.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
molecular_function GO:0043023 ribosomal large subunit binding