Lsi03G002360.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi03G002360.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	COX assembly mitochondrial protein
Location	chr03: 2951180 .. 2954347 (+)
Sequence length	930
RNA-Seq Expression	Lsi03G002360.1
Synteny	Lsi03G002360.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACTTTTTAATTTTTGTGAGGAAAAAACGTTTATTCTGTTTAGGGTTTAGAGTTTTAACAAAATTAAAAATTAAAAAAGAATAAAACTGGGAAGCGGAATTGAGACTCCGGAGTTGGCTTCGAACGTCCTACTTCCAACGAAACCAAGGGGATTTGACTGCTAATTCCTGTGCTCCTATTGCTTTCTGAAATGGGTTACATACAGGAAGCTCGGGAGAATCATGTGAAGAAGAAAGTAGAGGAAGGTATTATTCAAATGTTCTTCTCATTCTCTACATCTTTAATCTTCTTTTGATTGCTGATGGGTCAATTTAGTTTTTGAGTCTAGTATCTCTGCAAATAGTATAGAAAACTTTTGGAAATCTGCTGATGGTTTTTTTTGTCCATTTCCAGCTTTGCGCAGCAAAATGAAGCAGAAGGCGTTGAAGGAGTGCGATCATTACGCTTCAAAATATGCTGAATGCGCCTATGGCAAAACATTATCTGTCGTTTTCAAGTGTCGCAATCAAGCTAAGGAATTGAACAATTGCCTTCACCTATAGTGAGTCTCTGATTGTTTTGTTTAGCTTTTCGGTGGTTATATTAAACTTCAGCTGCGTTTTATTCAGATTGTTGGGATTCTATTTTGTTCATAACAGTGTGCATTATCATCGTTCCTCGCGCACCAATCATCATGTTTAGTCTAATTGATAAGATACACTGGTTGTGTTGCCTGTTAATTGAGCGTTTCAGGGATAGTAATTTTGGGGGTGATTTGTGAAAAATCAAGCATGGATCGTAATTTCAAAGGATTGAGTTTGAATTTAGAGACATGTTGGTGGCAAATGAAAGTAAGTCAAGAGCTGGAGTCATGAGGCCAAACATATGACTCTTATGGGGATGAATAACTGCTTAGTACATACCATTTTCTATGTTCATAGAAATAAAAAAAGGGTTCTTCTCAGAATGTATTTTGAGTGGGGGCGGGGATGTGACTCTTCATCGCCTACAGGCCATGAGTCACCTACGAAGTGTATTATGGCATGGGCGAGTCGGCATTAAGTGACTTTTAACTGTAGCAAAAAACTTCTAGCAGATGTCAATTGGCATCTACTGTGCTTCTTACTATGGACTAGAAGTTTCATTAGAGGGTATATCCCTGAAACCAATATCTATGGCTCAACAGGAGCGTTAGTAATGCTATACCACAAGATGGATGTTCGAGCAAGCCTTTACAAAAATGTAAGGGCTCATTGTTTGGTTATAGATACATGCCTACAACCAAATGGCAGCGCATATGGATGCCTCCATGTCATGATCTAGGTGGGGCAGACTTATGCGGCTGTTATCAGCTAGCAAACATTAAAATTGGCCTAGCAAACAAACAAGAGTCATCGTTGAGTTATAGAGTGCGCCAAGCAACGGTGCATCCACGATGCAATGGCCTTGTCCTTGTTAGGATTGTTAGTTATCTCTGCTGTAGTGTTGTAGTAGTATATTTAGTTTTATTGTTAGAAGGTTAGTTGGGCTGTTAATTCTCTTGGGCTTCTATTTAGAGAACACTGTATTCGTTTTGTAAACACTGAATATTATCGATTCTGATCAAGGATCAGTTCAGTTCTTGAGTAGAGGCAAGATGAAAACCCTAAGCCCAAGTTGGCTACTAGTGCATAGAGTTAAAAAAAATGCTTGTACATACAATGTGCATGATCTCAAGAGTCTGTTGGGAGAATGAGCTTTAGGTTAAGCCAACTATGGGCAAGAAGGTGCTCGTTTGAGATGCTTGAGTGCGGGCAACCAAATGGTCTCAGTATCAGAAGGAATAACCCGACATTGACTTTAACAGATGTGAGAGGATCTTGAATCGAGTTTTGAGGCAGGAGTTTGGCAGGTAATGAGTCATAGTAGTATCTAGCACCACACGATCTAAGGTGGTCTGATCAATATTGGTGATTTGATTGAAGAATTCGCACCCCATTATAAAGAACCAAACACTAGTACTCTAGGGCTTGGGATTCGGATGTGTGGGCAGGAAAGATACACTTGTGCTCTAGGGCTTGGGATTCGCATGTGTGGGCAGGAAAGATAAAAGACAGTAACCAACTGATGTTCTTAGAGAAAAGCTATATATTTAACTGAATGCCAAATAGCTTCGAGAAATCTGAATAGTTAAGGTTAAGGATATTATGTGAACAAATTTTATATTACTATTGAATAGTGAACAATATTTGGTTGAATCAACACTTTGCTAACAGTTTGGTGCATTATAAATAAAAATTTTCATTCTGAAACTCGTCTTGCCTGGTTCCATTTTAATGGAGAGGAAGAAGATAAAAAAAAAAAAATTAGAGCCCCCGCACTGGAGAGGGTGAGAGCCTCCTTGCACCAAGAGGCACCATCAACGAGTGGGTGGGGGTAGGGGGGGGAATATAAACCTGCATCAATCCTCAGAAGAAGTTTTGTCATGCTCTTACCATAGTTTTATTGAAATACAACACCCAATTGAGTTGACACACAATCACAAAGTATTGAAGGATAGTAATGTTACTCGTATTAGGCTTCGTAAATATGTAGGACAAGTATAAATTCAAAATTTCATCAACCGACAGCTTTACCCGAATTAAATACATCTATTCTTGTTTTGTTTTCCAGCACTAACGACTCCATGTTGGAAGAGATGAAGCGGGATTATGCACTTCAACACGATGGCAAGCCGTGAGAAAGAGTATAACATCATTCAATGAGAAAACTAAAGAGTATTGTTATGTGTCGATCTCAGGTGCACTTTCAGATGATGCTGTGTTGAATTTGTCACTTGAAGTATTGATATTAGTAAGAACTGAATGAAAGTTGAGGCTTTTTGCATTTTGTGATCTGGACAAGCAAAGGAACCCTGGTTTTTGGGCATAAGAATGATATTTGATCTCTTCATATATAAATTTTAGAGCAATTCTTCTTCGTCAAATCTATAATCTTTACCCCTTTGGCAGGTAAATCTTTACCAGGATTGAGTTGTCTTCGAGAATATAATTCTTGCCAAATACTAAAGTTCTCTTCCATCTGCCATTTAGGATCCTCATTGTTAGACTAGAGAGAGCCATGATCTGATTTATGGCCTTCATCGTTCTTGTCTTGCTTGGAGTGTAAAAAAGATTAGCGAATAATATAAAGTTATAATTCTATTATTGC

mRNA sequence

AACTTTTTAATTTTTGTGAGGAAAAAACGTTTATTCTGTTTAGGGTTTAGAGTTTTAACAAAATTAAAAATTAAAAAAGAATAAAACTGGGAAGCGGAATTGAGACTCCGGAGTTGGCTTCGAACGTCCTACTTCCAACGAAACCAAGGGGATTTGACTGCTAATTCCTGTGCTCCTATTGCTTTCTGAAATGGGTTACATACAGGAAGCTCGGGAGAATCATGTGAAGAAGAAAGTAGAGGAAGCTTTGCGCAGCAAAATGAAGCAGAAGGCGTTGAAGGAGTGCGATCATTACGCTTCAAAATATGCTGAATGCGCCTATGGCAAAACATTATCTGTCGTTTTCAAGTGTCGCAATCAAGCTAAGGAATTGAACAATTGCCTTCACCTATACACTAACGACTCCATGTTGGAAGAGATGAAGCGGGATTATGCACTTCAACACGATGGCAAGCCGTGAGAAAGAGTATAACATCATTCAATGAGAAAACTAAAGAGTATTGTTATGTGTCGATCTCAGGTGCACTTTCAGATGATGCTGTGTTGAATTTGTCACTTGAAGTATTGATATTAGTAAGAACTGAATGAAAGTTGAGGCTTTTTGCATTTTGTGATCTGGACAAGCAAAGGAACCCTGGTTTTTGGGCATAAGAATGATATTTGATCTCTTCATATATAAATTTTAGAGCAATTCTTCTTCGTCAAATCTATAATCTTTACCCCTTTGGCAGGTAAATCTTTACCAGGATTGAGTTGTCTTCGAGAATATAATTCTTGCCAAATACTAAAGTTCTCTTCCATCTGCCATTTAGGATCCTCATTGTTAGACTAGAGAGAGCCATGATCTGATTTATGGCCTTCATCGTTCTTGTCTTGCTTGGAGTGTAAAAAAGATTAGCGAATAATATAAAGTTATAATTCTATTATTGC

Coding sequence (CDS)

ATGGGTTACATACAGGAAGCTCGGGAGAATCATGTGAAGAAGAAAGTAGAGGAAGCTTTGCGCAGCAAAATGAAGCAGAAGGCGTTGAAGGAGTGCGATCATTACGCTTCAAAATATGCTGAATGCGCCTATGGCAAAACATTATCTGTCGTTTTCAAGTGTCGCAATCAAGCTAAGGAATTGAACAATTGCCTTCACCTATACACTAACGACTCCATGTTGGAAGAGATGAAGCGGGATTATGCACTTCAACACGATGGCAAGCCGTGA

Protein sequence

MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYGKTLSVVFKCRNQAKELNNCLHLYTNDSMLEEMKRDYALQHDGKP

Homology

[Close]

BLAST of Lsi03G002360.1 vs. ExPASy Swiss-Prot
Match: Q552P9 (Uncharacterized protein DDB_G0275933 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0275933 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.7e-07
Identity = 26/66 (39.39%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 16 VEEALRSKMKQKALKECDHYASKYAECAYGKTLSVVFKCRNQAKELNNCLHLYTNDSMLE 75
          V+  LR K+K ++LKEC  + + +A+C+  K +SVV++CR   + + NCL  YT    L 
Sbjct: 30 VDSYLRQKLKDQSLKECSSHVAAFADCSKDKYISVVWECRELQQLMKNCLVEYTTSERLI 89

Query: 76 EMKRDY 82
           MKR++
Sbjct: 90 GMKREW 95

[Close]

BLAST of Lsi03G002360.1 vs. ExPASy TrEMBL
Match: A0A1S3CA82 (COX assembly mitochondrial protein OS=Cucumis melo OX=3656 GN=LOC103498594 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.4e-41
Identity = 84/89 (94.38%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYGKTLSVVFKCRNQAKE 60
          MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYG+TLSV+FKCRNQAKE
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYGRTLSVIFKCRNQAKE 60

Query: 61 LNNCLHLYTNDSMLEEMKRDYALQHDGKP 90
          LNNCLHLYTNDS+L+EMKR+YALQHDGKP
Sbjct: 61 LNNCLHLYTNDSVLDEMKREYALQHDGKP 89

[Close]

BLAST of Lsi03G002360.1 vs. ExPASy TrEMBL
Match: A0A6J1K100 (COX assembly mitochondrial protein OS=Cucurbita maxima OX=3661 GN=LOC111489669 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.5e-40
Identity = 83/89 (93.26%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYGKTLSVVFKCRNQAKE 60
          MGYIQEARENHVKKKVEEALRSKMKQKA+KECDHYASKYAECAYG+TLSVVFKCRNQAKE
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKAMKECDHYASKYAECAYGRTLSVVFKCRNQAKE 60

Query: 61 LNNCLHLYTNDSMLEEMKRDYALQHDGKP 90
          LNNCLH YTND++LEEMKR+YALQHDGKP
Sbjct: 61 LNNCLHQYTNDTVLEEMKREYALQHDGKP 89

[Close]

BLAST of Lsi03G002360.1 vs. ExPASy TrEMBL
Match: A0A6J1FIP8 (COX assembly mitochondrial protein OS=Cucurbita moschata OX=3662 GN=LOC111444640 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 9.9e-40
Identity = 82/89 (92.13%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYGKTLSVVFKCRNQAKE 60
          MGYIQEARENHVKKKVEEALRSKMKQKA+KECDHYASKYAECAYG+TLSVVFKCRNQAKE
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKAMKECDHYASKYAECAYGRTLSVVFKCRNQAKE 60

Query: 61 LNNCLHLYTNDSMLEEMKRDYALQHDGKP 90
          LNNCLH YTND++LEEMKR+YA QHDGKP
Sbjct: 61 LNNCLHQYTNDTVLEEMKREYAHQHDGKP 89

[Close]

BLAST of Lsi03G002360.1 vs. ExPASy TrEMBL
Match: A0A0A0KVX6 (COX assembly mitochondrial protein OS=Cucumis sativus OX=3659 GN=Csa_5G644540 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 6.4e-39
Identity = 82/89 (92.13%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYGKTLSVVFKCRNQAKE 60
          MGYIQEARENHVKKKVEEALRSKMKQKALKECD YASKYAECAYG+TLSVVFKCRNQAKE
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDRYASKYAECAYGRTLSVVFKCRNQAKE 60

Query: 61 LNNCLHLYTNDSMLEEMKRDYALQHDGKP 90
          LNNCLH YTNDS+L+EMKR+YALQ DGKP
Sbjct: 61 LNNCLHSYTNDSILDEMKREYALQQDGKP 89

[Close]

BLAST of Lsi03G002360.1 vs. ExPASy TrEMBL
Match: A0A6J1BW91 (COX assembly mitochondrial protein OS=Momordica charantia OX=3673 GN=LOC111006094 PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.1e-37
Identity = 79/88 (89.77%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYGKTLSVVFKCRNQAKE 60
          MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYAS+YAECAYG+TLSVV+KCR+QAKE
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASRYAECAYGRTLSVVWKCRSQAKE 60

Query: 61 LNNCLHLYTNDSMLEEMKRDYALQHDGK 89
          LN+CLH YTND++LEEMKRDYALQ DGK
Sbjct: 61 LNSCLHQYTNDTVLEEMKRDYALQQDGK 88

[Close]

BLAST of Lsi03G002360.1 vs. NCBI nr
Match: XP_008459466.1 (PREDICTED: uncharacterized protein DDB_G0275933 [Cucumis melo])

HSP 1 Score: 177.6 bits (449), Expect = 4.9e-41
Identity = 84/89 (94.38%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYGKTLSVVFKCRNQAKE 60
          MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYG+TLSV+FKCRNQAKE
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYGRTLSVIFKCRNQAKE 60

Query: 61 LNNCLHLYTNDSMLEEMKRDYALQHDGKP 90
          LNNCLHLYTNDS+L+EMKR+YALQHDGKP
Sbjct: 61 LNNCLHLYTNDSVLDEMKREYALQHDGKP 89

[Close]

BLAST of Lsi03G002360.1 vs. NCBI nr
Match: KAG6578501.1 (hypothetical protein SDJN03_22949, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174.9 bits (442), Expect = 3.2e-40
Identity = 83/89 (93.26%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYGKTLSVVFKCRNQAKE 60
          MGYIQEARENHVKKKVEEALRSKMKQKA+KECDHYASKYAECAYG+TLSVVFKCRNQAKE
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKAMKECDHYASKYAECAYGRTLSVVFKCRNQAKE 60

Query: 61 LNNCLHLYTNDSMLEEMKRDYALQHDGKP 90
          LNNCLH YTND++LEEMKR+YALQHDGKP
Sbjct: 61 LNNCLHQYTNDTVLEEMKREYALQHDGKP 89

[Close]

BLAST of Lsi03G002360.1 vs. NCBI nr
Match: XP_022993759.1 (uncharacterized protein DDB_G0275933 [Cucurbita maxima] >KAG7016065.1 hypothetical protein SDJN02_21169 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 174.9 bits (442), Expect = 3.2e-40
Identity = 83/89 (93.26%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYGKTLSVVFKCRNQAKE 60
          MGYIQEARENHVKKKVEEALRSKMKQKA+KECDHYASKYAECAYG+TLSVVFKCRNQAKE
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKAMKECDHYASKYAECAYGRTLSVVFKCRNQAKE 60

Query: 61 LNNCLHLYTNDSMLEEMKRDYALQHDGKP 90
          LNNCLH YTND++LEEMKR+YALQHDGKP
Sbjct: 61 LNNCLHQYTNDTVLEEMKREYALQHDGKP 89

[Close]

BLAST of Lsi03G002360.1 vs. NCBI nr
Match: XP_038889684.1 (uncharacterized protein DDB_G0275933 [Benincasa hispida])

HSP 1 Score: 173.7 bits (439), Expect = 7.1e-40
Identity = 83/89 (93.26%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYGKTLSVVFKCRNQAKE 60
          MGYIQEARENHVKKKVEEALRSKMKQKALKECDH+ASKYAECAYG+TLSVVFKCR QAKE
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHFASKYAECAYGRTLSVVFKCRTQAKE 60

Query: 61 LNNCLHLYTNDSMLEEMKRDYALQHDGKP 90
          LNNCLHLYTN+S+LEEMKR+YALQHDGKP
Sbjct: 61 LNNCLHLYTNESVLEEMKREYALQHDGKP 89

[Close]

BLAST of Lsi03G002360.1 vs. NCBI nr
Match: XP_023549716.1 (uncharacterized protein DDB_G0275933 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.9 bits (437), Expect = 1.2e-39
Identity = 82/89 (92.13%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYGKTLSVVFKCRNQAKE 60
          MGYIQEARENHVKKKVEEALRSKMKQKA+KECDHYASKYAECAYG+TLSVVFKCR+QAKE
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKAMKECDHYASKYAECAYGRTLSVVFKCRDQAKE 60

Query: 61 LNNCLHLYTNDSMLEEMKRDYALQHDGKP 90
          LNNCLH YTND++LEEMKR+YALQHDGKP
Sbjct: 61 LNNCLHQYTNDTVLEEMKREYALQHDGKP 89

[Close]

BLAST of Lsi03G002360.1 vs. TAIR 10
Match: AT5G16060.1 (Cytochrome c oxidase biogenesis protein Cmc1-like )

HSP 1 Score: 129.4 bits (324), Expect = 1.4e-30
Identity = 61/86 (70.93%), Postives = 73/86 (84.88%), Query Frame = 0


Query: 3  YIQEARENHVKKKVEEALRSKMKQKALKECDHYASKYAECAYGKTLSVVFKCRNQAKELN 62
          Y+++ARENHVKKKVEEALRSKMK KAL ECD Y SKYA+CA G+T SVV+ CR QA+ELN
Sbjct: 4  YVEQARENHVKKKVEEALRSKMKAKALMECDQYVSKYAQCATGRTFSVVWTCRKQARELN 63

Query: 63 NCLHLYTNDSMLEEMKRDYALQHDGK 89
           CLH +TND++LEEMKR Y +Q +GK
Sbjct: 64 TCLHQFTNDNVLEEMKRAYMVQEEGK 89

The following BLAST results are available for this feature:

BLAST of Lsi03G002360.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q552P9	3.7e-07	39.39	Uncharacterized protein DDB_G0275933 OS=Dictyostelium discoideum OX=44689 GN=DDB...	[more]

BLAST of Lsi03G002360.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CA82	2.4e-41	94.38	COX assembly mitochondrial protein OS=Cucumis melo OX=3656 GN=LOC103498594 PE=3 ...	[more]
A0A6J1K100	1.5e-40	93.26	COX assembly mitochondrial protein OS=Cucurbita maxima OX=3661 GN=LOC111489669 P...	[more]
A0A6J1FIP8	9.9e-40	92.13	COX assembly mitochondrial protein OS=Cucurbita moschata OX=3662 GN=LOC111444640...	[more]
A0A0A0KVX6	6.4e-39	92.13	COX assembly mitochondrial protein OS=Cucumis sativus OX=3659 GN=Csa_5G644540 PE...	[more]
A0A6J1BW91	2.1e-37	89.77	COX assembly mitochondrial protein OS=Momordica charantia OX=3673 GN=LOC11100609...	[more]

BLAST of Lsi03G002360.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459466.1	4.9e-41	94.38	PREDICTED: uncharacterized protein DDB_G0275933 [Cucumis melo]	[more]
KAG6578501.1	3.2e-40	93.26	hypothetical protein SDJN03_22949, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022993759.1	3.2e-40	93.26	uncharacterized protein DDB_G0275933 [Cucurbita maxima] >KAG7016065.1 hypothetic...	[more]
XP_038889684.1	7.1e-40	93.26	uncharacterized protein DDB_G0275933 [Benincasa hispida]	[more]
XP_023549716.1	1.2e-39	92.13	uncharacterized protein DDB_G0275933 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi03G002360.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G16060.1	1.4e-30	70.93	Cytochrome c oxidase biogenesis protein Cmc1-like	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013892	Cytochrome c oxidase biogenesis protein Cmc1-like	PFAM	PF08583	Cmc1	coord: 20..81 e-value: 2.3E-15 score: 56.4
IPR013892	Cytochrome c oxidase biogenesis protein Cmc1-like	PANTHER	PTHR22977	COX ASSEMBLY MITOCHONDRIAL PROTEIN	coord: 2..86
None	No IPR available	PANTHER	PTHR22977:SF5	COX ASSEMBLY MITOCHONDRIAL PROTEIN HOMOLOG	coord: 2..86

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi03G002360	Lsi03G002360	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi03G002360.1.exon.1	Lsi03G002360.1.exon.1	exon
Lsi03G002360.1.exon.2	Lsi03G002360.1.exon.2	exon
Lsi03G002360.1.exon.3	Lsi03G002360.1.exon.3	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi03G002360.1.five_prime_UTR.1	Lsi03G002360.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi03G002360.1.CDS.1	Lsi03G002360.1.CDS.1	CDS
Lsi03G002360.1.CDS.2	Lsi03G002360.1.CDS.2	CDS
Lsi03G002360.1.CDS.3	Lsi03G002360.1.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi03G002360.1.three_prime_UTR.1	Lsi03G002360.1.three_prime_UTR.1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi03G002360.1	Lsi03G002360.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion